mRNA_H-elongata_contig16613.4161.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig16613.4161.1 vs. uniprot
Match: D8LE37_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE37_ECTSI) HSP 1 Score: 156 bits (394), Expect = 4.100e-42 Identity = 70/96 (72.92%), Postives = 82/96 (85.42%), Query Frame = 3
Query: 18 QTMEFDIVDQYNICVDCFNHDLLESDVLVGSAQWSLLPAFKRGTMDAWIPLTAPNGFGPPNEAGEIHCVFSFVGPPGLAYPQHQPGVDSFDDSLRV 305
+T+E D+VDQY + ++CFNHD+L+SD L+GSAQ SLLP FKRGT+D WI LT +G GPP EAGEIHCVFSF GP G+AYPQHQPGVDSFDDSLRV
Sbjct: 579 ETIEIDVVDQYTLWLECFNHDVLDSDELIGSAQCSLLPVFKRGTLDTWIQLTCSSGPGPPKEAGEIHCVFSFKGPLGVAYPQHQPGVDSFDDSLRV 674
BLAST of mRNA_H-elongata_contig16613.4161.1 vs. uniprot
Match: A0A7S2FW97_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FW97_9STRA) HSP 1 Score: 111 bits (278), Expect = 1.800e-26 Identity = 47/97 (48.45%), Postives = 68/97 (70.10%), Query Frame = 3
Query: 15 DQTMEFDIVDQYNICVDCFNHDLLESDVLVGSAQWSLLPAFKRGTMDAWIPLTAPNGFGPPNEAGEIHCVFSFVGPPGLAYPQHQPGVDSFDDSLRV 305
D+ + DIVD YN+ ++C++HDLL + L+G Q SLLP +K+G +D W+ + N +G P+ AG++H VF F GP G+AYPQ QP VDSFD+ R+
Sbjct: 344 DEVVHLDIVDHYNLEIECYDHDLLSAPELIGKCQVSLLPVYKKGKIDTWVTIKNANDWGNPSPAGDLHIVFEFEGPMGVAYPQDQPTVDSFDERERI 440
BLAST of mRNA_H-elongata_contig16613.4161.1 vs. uniprot
Match: A0A8J2SK96_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SK96_9STRA) HSP 1 Score: 107 bits (266), Expect = 7.690e-25 Identity = 43/97 (44.33%), Postives = 64/97 (65.98%), Query Frame = 3
Query: 15 DQTMEFDIVDQYNICVDCFNHDLLESDVLVGSAQWSLLPAFKRGTMDAWIPLTAPNGFGPPNEAGEIHCVFSFVGPPGLAYPQHQPGVDSFDDSLRV 305
D +E +VD + + ++C++HD + SD L+G + SLLP FKRG +D W+ + +G P AG+IH +F F PPG+ YPQH PG+DSFD+ R+
Sbjct: 728 DCDVEMRVVDHHELWIECYDHDAIGSDDLIGKCKLSLLPVFKRGLIDTWVTIKEETEWGKPKPAGDIHLIFEFEAPPGIRYPQHAPGIDSFDEKDRI 824
BLAST of mRNA_H-elongata_contig16613.4161.1 vs. uniprot
Match: A0A3R7DUE3_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7DUE3_9STRA) HSP 1 Score: 106 bits (264), Expect = 1.350e-24 Identity = 47/96 (48.96%), Postives = 65/96 (67.71%), Query Frame = 3
Query: 18 QTMEFDIVDQYNICVDCFNHDLLESDVLVGSAQWSLLPAFKRGTMDAWIPLTAPNGFGPPNEAGEIHCVFSFVGPPGLAYPQHQPGVDSFDDSLRV 305
QT EFD+VDQ+ + V+C++HD + D L+G A SLLP F+ G +D W+PLT FG +AGE+H SFV G+ YPQHQ G+D+FD+ R+
Sbjct: 431 QTFEFDVVDQFTMVVECWDHDGMGDDDLIGEASVSLLPVFRYGYIDEWVPLTFRGKFGSSQKAGEVHFELSFVAVDGIGYPQHQVGMDTFDEKERL 526
BLAST of mRNA_H-elongata_contig16613.4161.1 vs. uniprot
Match: A0A024UIF3_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UIF3_9STRA) HSP 1 Score: 105 bits (263), Expect = 1.950e-24 Identity = 45/96 (46.88%), Postives = 64/96 (66.67%), Query Frame = 3
Query: 18 QTMEFDIVDQYNICVDCFNHDLLESDVLVGSAQWSLLPAFKRGTMDAWIPLTAPNGFGPPNEAGEIHCVFSFVGPPGLAYPQHQPGVDSFDDSLRV 305
Q EFD+VDQ+ + V+C++HD + D ++G SLLP F+ G +D W+PLT FG +AG++H SFVGP G+ YPQHQ G+D+FD R+
Sbjct: 669 QEFEFDVVDQFTMMVECWDHDGMGDDDMIGETSLSLLPVFRYGYVDEWVPLTFRGKFGSSQKAGDVHIQLSFVGPDGIGYPQHQVGMDAFDHKERL 764
BLAST of mRNA_H-elongata_contig16613.4161.1 vs. uniprot
Match: A0A3R6WEY0_9STRA (Uncharacterized protein n=6 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6WEY0_9STRA) HSP 1 Score: 104 bits (260), Expect = 4.920e-24 Identity = 47/96 (48.96%), Postives = 64/96 (66.67%), Query Frame = 3
Query: 18 QTMEFDIVDQYNICVDCFNHDLLESDVLVGSAQWSLLPAFKRGTMDAWIPLTAPNGFGPPNEAGEIHCVFSFVGPPGLAYPQHQPGVDSFDDSLRV 305
QT EFD+VDQ+ + V+C++HD + D L+G A SLLP F+ G +D W PLT FG +AGE+H SFV G+ YPQHQ G+D+FD+ R+
Sbjct: 431 QTFEFDVVDQFTMVVECWDHDGMGDDDLIGEASVSLLPVFRYGYIDEWAPLTFRGKFGSSQKAGEVHFELSFVAVDGIGYPQHQVGMDTFDEKERL 526
BLAST of mRNA_H-elongata_contig16613.4161.1 vs. uniprot
Match: W4H071_9STRA (Uncharacterized protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H071_9STRA) HSP 1 Score: 103 bits (257), Expect = 1.240e-23 Identity = 46/96 (47.92%), Postives = 64/96 (66.67%), Query Frame = 3
Query: 18 QTMEFDIVDQYNICVDCFNHDLLESDVLVGSAQWSLLPAFKRGTMDAWIPLTAPNGFGPPNEAGEIHCVFSFVGPPGLAYPQHQPGVDSFDDSLRV 305
Q EFD+VDQ+ + V+C++HD + D L+G A SLLP F+ G +D W+PLT FG +AGE+H SFV G+ YPQHQ G+D+FD+ R+
Sbjct: 441 QMFEFDVVDQFTMVVECWDHDGMGDDDLIGEASVSLLPVFRYGYIDEWVPLTFRGKFGSSQKAGEVHFELSFVAVHGIGYPQHQVGMDTFDEKERL 536
BLAST of mRNA_H-elongata_contig16613.4161.1 vs. uniprot
Match: A0A485KUT7_9STRA (Aste57867_12159 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KUT7_9STRA) HSP 1 Score: 101 bits (252), Expect = 5.940e-23 Identity = 43/97 (44.33%), Postives = 64/97 (65.98%), Query Frame = 3
Query: 15 DQTMEFDIVDQYNICVDCFNHDLLESDVLVGSAQWSLLPAFKRGTMDAWIPLTAPNGFGPPNEAGEIHCVFSFVGPPGLAYPQHQPGVDSFDDSLRV 305
DQ +FD+VDQ+N+ ++C++HD + D L+G SLLP F+ G +D W PL FG +AGE+H SFV P G+ YPQHQ G+++F++ R+
Sbjct: 616 DQPFDFDVVDQFNMVIECWDHDNMGDDDLIGELNLSLLPIFRYGYLDEWYPLAFHGKFGSTQKAGELHLELSFVAPQGILYPQHQVGMETFNEKERL 712
BLAST of mRNA_H-elongata_contig16613.4161.1 vs. uniprot
Match: A0A6G0WZW8_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WZW8_9STRA) HSP 1 Score: 100 bits (250), Expect = 1.110e-22 Identity = 44/96 (45.83%), Postives = 63/96 (65.62%), Query Frame = 3
Query: 18 QTMEFDIVDQYNICVDCFNHDLLESDVLVGSAQWSLLPAFKRGTMDAWIPLTAPNGFGPPNEAGEIHCVFSFVGPPGLAYPQHQPGVDSFDDSLRV 305
+T EFD+VDQ+++ + ++HD + D L+G SLLP F+ G +D W PL FG +AGE+H +FVGP G+ +PQHQPG+D+FD RV
Sbjct: 615 ETFEFDVVDQFSMEIQVWDHDSMGDDDLIGEMHLSLLPIFRYGFLDEWYPLQFKGKFGSMQKAGELHLELAFVGPDGIGFPQHQPGMDTFDHRERV 710
BLAST of mRNA_H-elongata_contig16613.4161.1 vs. uniprot
Match: K3WZ00_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WZ00_GLOUD) HSP 1 Score: 100 bits (249), Expect = 1.520e-22 Identity = 46/97 (47.42%), Postives = 63/97 (64.95%), Query Frame = 3
Query: 12 RDQTMEFDIVDQYNICVDCFNHDLLESDVLVGSAQWSLLPAFKRGTMDAWIPLTAPNGFGPPNEAGEIHCVFSFVGPPGLAYPQHQPGVDSFDDSLR 302
++T F +VDQYNI V+ ++ D + D L+GSA SLLP F+ G +D W+ L FG + AG++H + SF GPPG+AYPQHQ G+D F D R
Sbjct: 277 ENETFTFQVVDQYNILVEVWDEDSIGDDDLIGSASVSLLPVFRYGHIDNWLNLWVKGKFGNKDPAGQLHLIMSFEGPPGIAYPQHQIGMDRFTDKER 373 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16613.4161.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig16613.4161.1 >prot_H-elongata_contig16613.4161.1 ID=prot_H-elongata_contig16613.4161.1|Name=mRNA_H-elongata_contig16613.4161.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=102bp MTLSVIRRWSSTSWISTIYVWTASITICLRATSSSAARSGASSQLLREGPback to top mRNA from alignment at H-elongata_contig16613:6607..7162- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig16613.4161.1 ID=mRNA_H-elongata_contig16613.4161.1|Name=mRNA_H-elongata_contig16613.4161.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=556bp|location=Sequence derived from alignment at H-elongata_contig16613:6607..7162- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig16613:6607..7162- >mRNA_H-elongata_contig16613.4161.1 ID=mRNA_H-elongata_contig16613.4161.1|Name=mRNA_H-elongata_contig16613.4161.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=612bp|location=Sequence derived from alignment at H-elongata_contig16613:6607..7162- (Himanthalia elongata Himel1 dioecious)back to top |