mRNA_H-elongata_contig165975.4151.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig165975.4151.1
Unique NamemRNA_H-elongata_contig165975.4151.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig165975.4151.1 vs. uniprot
Match: D7G0Q9_ECTSI (MORN motif n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0Q9_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 9.700e-17
Identity = 32/39 (82.05%), Postives = 36/39 (92.31%), Query Frame = 1 
Query:   25 FDPLGCKICDIECAAGTLIGGRTVCPGSLGEGKGPKCKG 141
             DPLGCK+CD+ECAAG L+GGRTVCPGSLG GKGPKC+G
Sbjct:  169 LDPLGCKVCDVECAAGVLVGGRTVCPGSLGGGKGPKCRG 207
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig165975.4151.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G0Q9_ECTSI9.700e-1782.05MORN motif n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig165975contigH-elongata_contig165975:234..398 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.9
Seed ortholog evalue2.1e-13
Seed eggNOG ortholog2880.D7G0Q9
EggNOG free text desc.Translation initiation factor IF-2, N-terminal region
EggNOG OGsCOG5253@1,KOG0229@2759
Ec32 ortholog descriptionMORN motif containing protein
Ec32 orthologEc-20_001350.1
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size165
Cds size165
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929971.0307865-CDS-H-elongata_contig165975:233..3981622929971.0307865-CDS-H-elongata_contig165975:233..398Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig165975 234..398 +
1691679229.1758075-CDS-H-elongata_contig165975:233..3981691679229.1758075-CDS-H-elongata_contig165975:233..398Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig165975 234..398 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig165975.4151.1prot_H-elongata_contig165975.4151.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig165975 234..398 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig165975.4151.1

>prot_H-elongata_contig165975.4151.1 ID=prot_H-elongata_contig165975.4151.1|Name=mRNA_H-elongata_contig165975.4151.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=55bp
KEHGRGAIFDPLGCKICDIECAAGTLIGGRTVCPGSLGEGKGPKCKGEFL
CPLA*
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mRNA from alignment at H-elongata_contig165975:234..398+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig165975.4151.1 ID=mRNA_H-elongata_contig165975.4151.1|Name=mRNA_H-elongata_contig165975.4151.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=165bp|location=Sequence derived from alignment at H-elongata_contig165975:234..398+ (Himanthalia elongata Himel1 dioecious)
AAGGAACACGGCAGAGGGGCCATTTTCGACCCCCTCGGGTGCAAGATCTG
TGACATCGAGTGCGCCGCGGGGACGCTGATTGGGGGCCGGACGGTTTGTC
CCGGTTCCCTGGGAGAGGGCAAGGGGCCCAAGTGCAAAGGCGAGTTCTTG
TGTCCGCTCGCCTGA
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Coding sequence (CDS) from alignment at H-elongata_contig165975:234..398+

>mRNA_H-elongata_contig165975.4151.1 ID=mRNA_H-elongata_contig165975.4151.1|Name=mRNA_H-elongata_contig165975.4151.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=330bp|location=Sequence derived from alignment at H-elongata_contig165975:234..398+ (Himanthalia elongata Himel1 dioecious)
AAGGAACACGGCAGAGGGGCCATTTTCGACCCCCTCGGGTGCAAGATCTG
TGACATCGAGTGCGCCGCGGGGACGCTGATTGGGGGCCGGACGGTTTGTC
CCGGTTCCCTGGGAGAGGGCAAGGGGCCCAAGTGCAAAGGCGAGTTCTTG
TGTCCGCTCGCCTGAAAGGAACACGGCAGAGGGGCCATTTTCGACCCCCT
CGGGTGCAAGATCTGTGACATCGAGTGCGCCGCGGGGACGCTGATTGGGG
GCCGGACGGTTTGTCCCGGTTCCCTGGGAGAGGGCAAGGGGCCCAAGTGC
AAAGGCGAGTTCTTGTGTCCGCTCGCCTGA
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