mRNA_H-elongata_contig165790.4144.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig165790.4144.1
Unique NamemRNA_H-elongata_contig165790.4144.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig165790.4144.1 vs. uniprot
Match: D8LQR2_ECTSI (Lrc5, mitochondrial YqeH-related GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQR2_ECTSI)

HSP 1 Score: 134 bits (338), Expect = 3.740e-35
Identity = 67/70 (95.71%), Postives = 70/70 (100.00%), Query Frame = 1
Query:    1 QQSAADVVIAGLGWVSVTGAGPVTLRVWAPRGVLVMAREPLLPFESWETTAKFTGGSTVKKGRKKQGRRA 210
            ++SAADVVIAGLGWVSVTGAGPVTLRVWAPRGVLVMAREPLLP+ESWETTAKFTGGSTVKKGRKKQGRRA
Sbjct:  669 RESAADVVIAGLGWVSVTGAGPVTLRVWAPRGVLVMAREPLLPYESWETTAKFTGGSTVKKGRKKQGRRA 738          
BLAST of mRNA_H-elongata_contig165790.4144.1 vs. uniprot
Match: A0A835YJZ8_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJZ8_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 8.880e-19
Identity = 38/64 (59.38%), Postives = 54/64 (84.38%), Query Frame = 1
Query:   16 DVVIAGLGWVSVTGAGPVTLRVWAPRGVLVMAREPLLPFESWETTAKFTGGSTVKKGRKKQGRR 207
            D+V++GLGW+SVTGAG   ++V AP+ +LV+ R+PL+PFE+W+TT+ FTG  TVK+G+K QGRR
Sbjct:  462 DIVLSGLGWISVTGAGECAVKVTAPKDILVLTRDPLMPFEAWDTTSTFTGTRTVKRGKKTQGRR 525          
BLAST of mRNA_H-elongata_contig165790.4144.1 vs. uniprot
Match: B8BY71_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BY71_THAPS)

HSP 1 Score: 77.8 bits (190), Expect = 1.440e-16
Identity = 36/64 (56.25%), Postives = 47/64 (73.44%), Query Frame = 1
Query:    1 QQSAADVVIAGLGWVSVTGAGPVTLRVWAPRGVLVMAREPLLPFESWETTAKFTGGSTVKKGRK 192
            +Q+AAD+ + GLGWV+VTGAG   +RV  P+GV V  R PL+PF+ WE TAK+TGG  V+K  K
Sbjct:   73 KQAAADITLRGLGWVAVTGAGRAQVRVGVPKGVGVSVRPPLMPFDVWEATAKYTGGRAVRKSSK 136          
BLAST of mRNA_H-elongata_contig165790.4144.1 vs. uniprot
Match: K0T5S6_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T5S6_THAOC)

HSP 1 Score: 79.7 bits (195), Expect = 8.820e-16
Identity = 37/70 (52.86%), Postives = 54/70 (77.14%), Query Frame = 1
Query:    1 QQSAADVVIAGLGWVSVTGAGPVTLRVWAPRGVLVMAREPLLPFESWETTAKFTGGSTVKK-GRKKQGRR 207
            +Q+AAD+ + GLGWV+VTGAG   +R+  P+G+ V  R PL+PF+ WETTAK+TGG +V+K G+ + G+R
Sbjct:  537 KQAAADITLRGLGWVAVTGAGRAKVRIGVPKGIGVSLRPPLMPFDVWETTAKYTGGRSVRKSGKSRTGKR 606          
BLAST of mRNA_H-elongata_contig165790.4144.1 vs. uniprot
Match: A0A7S4NA62_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NA62_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.650e-15
Identity = 35/64 (54.69%), Postives = 48/64 (75.00%), Query Frame = 1
Query:    1 QQSAADVVIAGLGWVSVTGAGPVTLRVWAPRGVLVMAREPLLPFESWETTAKFTGGSTVKKGRK 192
            +++AAD+ + GLGWVSVTGAG   +R+  PRGV +  R PL+PF+ WE TA++TGG  V+KG K
Sbjct:  600 KEAAADIALRGLGWVSVTGAGVANVRISVPRGVGISVRPPLMPFDIWEATARYTGGRAVRKGGK 663          
BLAST of mRNA_H-elongata_contig165790.4144.1 vs. uniprot
Match: A0A7S2LA52_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LA52_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 9.970e-15
Identity = 33/64 (51.56%), Postives = 47/64 (73.44%), Query Frame = 1
Query:    1 QQSAADVVIAGLGWVSVTGAGPVTLRVWAPRGVLVMAREPLLPFESWETTAKFTGGSTVKKGRK 192
            +Q+AAD+ + GLGWV+VTGAG   +R+  P+G+ +  R PL+PF+ WE TAK+TGG  V+K  K
Sbjct:  367 KQAAADITLRGLGWVAVTGAGVAKVRIGVPKGIGITVRPPLMPFDVWEATAKYTGGRAVRKSTK 430          
BLAST of mRNA_H-elongata_contig165790.4144.1 vs. uniprot
Match: A0A7S2W145_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2W145_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 4.190e-14
Identity = 32/70 (45.71%), Postives = 51/70 (72.86%), Query Frame = 1
Query:    1 QQSAADVVIAGLGWVSVTGAGPVTLRVWAPRGVLVMAREPLLPFESWETTAKFTGGSTVKK-GRKKQGRR 207
            +++ AD+ + G+GWV+VTGAG   +RV  P+G+ +  R PL+PF+ W  TA++TGG +V+K G+ K G+R
Sbjct:  132 KEAGADITLRGIGWVAVTGAGTAKVRVSVPKGIGISVRPPLMPFDVWAATARYTGGRSVRKSGKSKSGKR 201          
BLAST of mRNA_H-elongata_contig165790.4144.1 vs. uniprot
Match: A0A1Z5KI84_FISSO (CP-type G domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KI84_FISSO)

HSP 1 Score: 74.7 bits (182), Expect = 5.120e-14
Identity = 30/61 (49.18%), Postives = 46/61 (75.41%), Query Frame = 1
Query:    1 QQSAADVVIAGLGWVSVTGAGPVTLRVWAPRGVLVMAREPLLPFESWETTAKFTGGSTVKK 183
            +++AAD+ I GLGWV+VTGAGP  +++  P+ + +  R PL+PF+ WE+TAK+TG   V+K
Sbjct:  667 KEAAADITITGLGWVAVTGAGPAKVKICVPKSIGISVRPPLMPFDMWESTAKYTGNKAVRK 727          
BLAST of mRNA_H-elongata_contig165790.4144.1 vs. uniprot
Match: A0A7S2LG86_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LG86_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 1.300e-13
Identity = 30/64 (46.88%), Postives = 47/64 (73.44%), Query Frame = 1
Query:    1 QQSAADVVIAGLGWVSVTGAGPVTLRVWAPRGVLVMAREPLLPFESWETTAKFTGGSTVKKGRK 192
            +++AAD+ + G+GW++VTGAG   +++  P G+ V  R PL+PF+ WE TAK+TGG  ++KG K
Sbjct:  559 KEAAADISLRGIGWIAVTGAGIAKVKIGVPEGIGVAVRPPLMPFDMWEATAKYTGGRAIRKGGK 622          
BLAST of mRNA_H-elongata_contig165790.4144.1 vs. uniprot
Match: A0A7S0VUH3_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VUH3_9CRYP)

HSP 1 Score: 69.7 bits (169), Expect = 1.860e-13
Identity = 35/62 (56.45%), Postives = 42/62 (67.74%), Query Frame = 1
Query:    1 QQSAADVVIAGLGWVSVTGAGPVTLRVWAPRGVLVMAREPLLPFESWETTAKFTGGSTVKKG 186
            ++S  DV+ AGLGWVS+TG G V +  WAP GV VM R PL+PFE+  TT  FTG    KKG
Sbjct:   65 ERSCVDVIFAGLGWVSLTGIGRVDINAWAPEGVGVMTRLPLMPFEALSTTESFTGAE--KKG 124          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig165790.4144.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQR2_ECTSI3.740e-3595.71Lrc5, mitochondrial YqeH-related GTPase n=1 Tax=Ec... [more]
A0A835YJZ8_9STRA8.880e-1959.38P-loop containing nucleoside triphosphate hydrolas... [more]
B8BY71_THAPS1.440e-1656.25Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
K0T5S6_THAOC8.820e-1652.86Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S4NA62_9STRA1.650e-1554.69Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S2LA52_9STRA9.970e-1551.56Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S2W145_9STRA4.190e-1445.71Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A1Z5KI84_FISSO5.120e-1449.18CP-type G domain-containing protein n=2 Tax=Fistul... [more]
A0A7S2LG86_9STRA1.300e-1346.88Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S0VUH3_9CRYP1.860e-1356.45Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig165790contigH-elongata_contig165790:100..312 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score136.3
Seed ortholog evalue5.4e-30
Seed eggNOG ortholog2880.D8LQR2
EggNOG free text desc.GTP binding
EggNOG OGsCOG1161@1,KOG1249@2759
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons1
Model size213
Cds size213
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929970.609578-CDS-H-elongata_contig165790:99..3121622929970.609578-CDS-H-elongata_contig165790:99..312Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig165790 100..312 +
1691679229.022961-CDS-H-elongata_contig165790:99..3121691679229.022961-CDS-H-elongata_contig165790:99..312Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig165790 100..312 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig165790.4144.1prot_H-elongata_contig165790.4144.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig165790 100..312 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig165790.4144.1

>prot_H-elongata_contig165790.4144.1 ID=prot_H-elongata_contig165790.4144.1|Name=mRNA_H-elongata_contig165790.4144.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=71bp
QQSAADVVIAGLGWVSVTGAGPVTLRVWAPRGVLVMAREPLLPFESWETT
AKFTGGSTVKKGRKKQGRRA*
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mRNA from alignment at H-elongata_contig165790:100..312+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig165790.4144.1 ID=mRNA_H-elongata_contig165790.4144.1|Name=mRNA_H-elongata_contig165790.4144.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=213bp|location=Sequence derived from alignment at H-elongata_contig165790:100..312+ (Himanthalia elongata Himel1 dioecious)
CAACAGTCGGCGGCGGACGTGGTCATCGCCGGTCTAGGATGGGTCAGCGT CACAGGAGCTGGCCCCGTGACGCTCCGCGTTTGGGCGCCGCGCGGGGTGC TCGTGATGGCGCGCGAGCCCCTCCTGCCCTTCGAGTCGTGGGAGACGACC GCAAAGTTCACGGGGGGTTCGACGGTCAAGAAGGGAAGGAAGAAGCAAGG GCGGCGCGCTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig165790:100..312+

>mRNA_H-elongata_contig165790.4144.1 ID=mRNA_H-elongata_contig165790.4144.1|Name=mRNA_H-elongata_contig165790.4144.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=426bp|location=Sequence derived from alignment at H-elongata_contig165790:100..312+ (Himanthalia elongata Himel1 dioecious)
CAACAGTCGGCGGCGGACGTGGTCATCGCCGGTCTAGGATGGGTCAGCGT
CACAGGAGCTGGCCCCGTGACGCTCCGCGTTTGGGCGCCGCGCGGGGTGC
TCGTGATGGCGCGCGAGCCCCTCCTGCCCTTCGAGTCGTGGGAGACGACC
GCAAAGTTCACGGGGGGTTCGACGGTCAAGAAGGGAAGGAAGAAGCAAGG
GCGGCGCGCTTGACAACAGTCGGCGGCGGACGTGGTCATCGCCGGTCTAG
GATGGGTCAGCGTCACAGGAGCTGGCCCCGTGACGCTCCGCGTTTGGGCG
CCGCGCGGGGTGCTCGTGATGGCGCGCGAGCCCCTCCTGCCCTTCGAGTC
GTGGGAGACGACCGCAAAGTTCACGGGGGGTTCGACGGTCAAGAAGGGAA
GGAAGAAGCAAGGGCGGCGCGCTTGA
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