mRNA_H-elongata_contig16568.4140.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig16568.4140.1 vs. uniprot
Match: D7G2G9_ECTSI (Similar to Chalcone Isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2G9_ECTSI) HSP 1 Score: 256 bits (654), Expect = 2.480e-79 Identity = 131/202 (64.85%), Postives = 164/202 (81.19%), Query Frame = 2
Query: 689 PLSKEVVDVATGLALPRTKRF--SRSDLTCLGAGVRAKSIAVAKINVYTVGLYVDPKGARGALRKYTGLDPARLRKDASVFKVLGAAG-FSKYLHLVFARSVGAKKVVEALTSVKGVNKDVLDRFSAIMLDAVGGSIGKGETVSLGWEGKDKMVVLVRDRPAGTVIDAALPRAVFDLYLGDTPVSLAAKSAFAEGLAAFLSS 1285
PLS +V D ATGL LPRTK+F S++ L CLG GVR KS+A +NVYTVGLYV+PKGAR AL+ Y G DP L KD SV++VLG AG FSKYLHLVFARSVGA+KVV+A T+VKGVN+DVLD+FS++ ++ VG SI + E+V+LGWEGKD++VVLVRD+ G+VID +LP +VF+L+LG PVS AK+AFAEG+ AFL+S
Sbjct: 28 PLSPDVRDPATGLVLPRTKQFASSKTGLVCLGVGVRVKSVAFVNVNVYTVGLYVEPKGARKALKSYAGRDPEELSKDKSVYRVLGGAGDFSKYLHLVFARSVGAQKVVDAFTAVKGVNQDVLDKFSSLTMEGVGKSINREESVTLGWEGKDRLVVLVRDKEIGSVIDESLPASVFNLFLGSDPVSPVAKTAFAEGVPAFLAS 229
BLAST of mRNA_H-elongata_contig16568.4140.1 vs. uniprot
Match: A0A6H5KHX0_9PHAE (FAPb protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHX0_9PHAE) HSP 1 Score: 254 bits (648), Expect = 8.420e-77 Identity = 130/202 (64.36%), Postives = 162/202 (80.20%), Query Frame = 2
Query: 689 PLSKEVVDVATGLALPRTKRF--SRSDLTCLGAGVRAKSIAVAKINVYTVGLYVDPKGARGALRKYTGLDPARLRKDASVFKVLGAAG-FSKYLHLVFARSVGAKKVVEALTSVKGVNKDVLDRFSAIMLDAVGGSIGKGETVSLGWEGKDKMVVLVRDRPAGTVIDAALPRAVFDLYLGDTPVSLAAKSAFAEGLAAFLSS 1285
PLS +V D ATGL LPRTK+F S++ L CLG GVR KS+A +NVYTVGLYV+PKGAR AL+ Y G DP L KD SV++VLG AG FSKYLHLVFARSVGA+KVV+A T+VKGVN+DVLD+FS++ ++ VG SI + E+V+LGWEGKD++VVLVRD+ G++ID ALP +VF L+LG PVS AK+AFAEG+ FL+S
Sbjct: 146 PLSPDVRDPATGLVLPRTKQFASSKTGLVCLGVGVRVKSVAFVTVNVYTVGLYVEPKGARKALKSYAGRDPEELSKDKSVYRVLGGAGDFSKYLHLVFARSVGAQKVVDAFTAVKGVNQDVLDKFSSLTMEGVGKSIDREESVTLGWEGKDRLVVLVRDKEIGSIIDEALPASVFSLFLGSDPVSPVAKTAFAEGVPPFLAS 347
BLAST of mRNA_H-elongata_contig16568.4140.1 vs. uniprot
Match: A0A0G4GUV1_VITBC (Chalcone_isomerase domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GUV1_VITBC) HSP 1 Score: 160 bits (406), Expect = 6.050e-43 Identity = 86/199 (43.22%), Postives = 125/199 (62.81%), Query Frame = 2
Query: 689 PLSKEVVDVATGLALPRTKRFSRSD-LTCLGAGVRAKSIAVAKINVYTVGLYVDPKGARGALRKYTGLDPARLRKDASVFKVLGAAGFSKYLHLVFARSVGAKKVVEALTSVKGVNKDVLDRFSAIMLDAVGGSIGKGETVSLGWEGKDKMVVLVRDRPAGTVIDAALPRAVFDLYLGDTPVSLAAKSAFAEGLAAFLS 1282
P++ + D TG+ P F + +T LGAG R K++ +AK+NVY+VGLYV+PK A AL + G L D + L K + L FAR+VGA KV +AL++VKGV +V+ F +++ +G SI K ET+++GW ++ VL+R +PAGTV+DA LP+A F+LYLG TPVS+ AK AF + +A+ S
Sbjct: 4 PVAAVLKDKVTGIEFPCEATFPGTPKMTLLGAGPRRKNLGIAKVNVYSVGLYVEPKEAAKALSSFKGESEESLMNDDRFYDTLLGKEVPKLVLLKFARTVGAHKVADALSAVKGVEPEVVSEFCSLLEKGMGASIKKAETIAMGWTEDQRLDVLIRGQPAGTVVDAKLPKAFFELYLGKTPVSMEAKHAFVKRVASLFS 202
BLAST of mRNA_H-elongata_contig16568.4140.1 vs. uniprot
Match: A0A6S9GES1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9GES1_HETAK) HSP 1 Score: 164 bits (415), Expect = 1.470e-42 Identity = 94/199 (47.24%), Postives = 125/199 (62.81%), Query Frame = 2
Query: 671 APSSSSPLSKEVVDVATGLALPRTKRFSRSDLTCLGAGVRAKSIAVAKINVYTVGLYVDPKGARGALRKYTGLDPARLRKDASVFKVLGAAGFSKYLHLVFARSVGAKKVVEALTSVKGVNKDVLDRFSAIMLDAVGGSIGKGETVSLGWEGKDKMVVLVRDRPAGTVIDAALPRAVFDLYLGDTPVSLAAKSAFAEGL 1267
AP + +P + + D ATG+A K F + L +GAGVRAK++ VA +NVY+V LYVD A AL Y G VF VL A F+K ++L FAR VG++K+++ALT+V+GV LD FSA++L A+GG IG ET++LG++ M V VR+ AGTV DA L AVF LYLG +PVS AK AF G+
Sbjct: 154 APGTLAPGATSLTDDATGIAFDGVKAFGGAKLAAVGAGVRAKNLGVAMVNVYSVCLYVDKPKAAKALATYKG------NPGPGVFDVLMAKNFNKVMYLKFARGVGSQKIIDALTAVEGVPAATLDEFSALLLGAMGGQIGASETIALGFDASGSMSVYVREALAGTVADATLAPAVFKLYLGASPVSQPAKDAFGAGV 346
BLAST of mRNA_H-elongata_contig16568.4140.1 vs. uniprot
Match: A0A0G4GWT2_9ALVE (Chalcone_isomerase domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4GWT2_9ALVE) HSP 1 Score: 158 bits (399), Expect = 1.160e-41 Identity = 92/193 (47.67%), Postives = 121/193 (62.69%), Query Frame = 2
Query: 689 PLSKEVVDVATGLALPRTKRFSRSD-LTCLGAGVRAKSI-AVAKINVYTVGLYVDPKGARGALRKYTGLDPARLRKDASVFKVLGAAGFSKYLHLVFARSVGAKKVVEALTSVKGVNKDVLDRFSAIMLDAVGGSIGKGETVSLGWEGKDKMVVLVRDRPAGTVIDAALPRAVFDLYLGDTPVSLAAKSAFAE 1261
PL+ + D ATGL F S +T LGAGVRAK++ +NVY+VGLYV+P AR L + ++ A L K +K L K +HL FARSVGA K+VEALTS+ GV ++ L +FS ++LD++G SIG ETV+L D + V+VR + AG+V D+ LP+A FDLYLG PVS AK AFA
Sbjct: 31 PLAAILTDAATGLDFETDVSFPSSPKMTLLGAGVRAKALLGPIAVNVYSVGLYVEPSKARQTLSGFKTIEEAELAKKEDFYKALMKEDLPKAMHLKFARSVGASKIVEALTSLNGVPEESLSKFSKLLLDSIGSSIGYKETVTLSSSKPDTLDVIVRGKHAGSVRDSKLPKAFFDLYLGKNPVSSEAKKAFAS 223
BLAST of mRNA_H-elongata_contig16568.4140.1 vs. uniprot
Match: A0A7S2UYK7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UYK7_9STRA) HSP 1 Score: 141 bits (356), Expect = 8.850e-36 Identity = 81/181 (44.75%), Postives = 110/181 (60.77%), Query Frame = 2
Query: 680 SSSPLSKEVVDVATGLALPRTKRFSRSD----LTCLGAGVRAKS-IAVAKINVYTVGLYVDPKGARGALRKYTGLDPARLRKDASVFKVLGAAGFSKYLHLVFARSVGAKKVVEALTSVKGVNKDVLDRFSAIMLDAVGGSIGKGETVSLGWEGKDKMVVLVRDRPAGTVIDAALPRAVFD 1207
SSS + +V + TG+ P TK FS + LT G GVR K+ + K+NVY +GLYVDP A A KY G D + KD FK+L + GF+K +++ +AR+VG KVV+AL V + LD F +++ G +IG ET++LGWEGKDK+VV VRD+ GTV A L AVF+
Sbjct: 23 SSSSAADKVTEPVTGIDFPVTKSFSLNSTSPTLTLTGVGVRVKALVGPLKVNVYGMGLYVDPSRAARAFSKYKGKDAKEVAKDDDFFKILHSPGFAKAIYIDYARAVGVDKVVDALRLVPTEDTAALDYFCDLLVIGTGSTIGNRETMTLGWEGKDKLVVQVRDKTVGTVTSAKLVEAVFE 203
BLAST of mRNA_H-elongata_contig16568.4140.1 vs. uniprot
Match: A0A4D9CUC0_9STRA (Chalcone_isomerase domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CUC0_9STRA) HSP 1 Score: 129 bits (325), Expect = 5.450e-31 Identity = 75/193 (38.86%), Postives = 111/193 (57.51%), Query Frame = 2
Query: 698 KEVVDVATGLALPRTKRFSRS----DLTCLGAGVRAKSIAVAKINVYTVGLYVDPKGARGALRKYTGLDPARLRKDASVFKVL--GAAGFSKYLHLVFARSVGAKKVVEALTSVKGVNKDVLDRFSAIMLDAVGGSIGKGETVSLGWEGKDKMVVLVRDRPAGTVIDAALPRAVFDLYLGDTPVSLAAKSAFA 1258
KEVVD TGL P + +L+ LG G R K++ V ++NVY VGLY++ L+ + G L K+A + L +G ++ L+L FAR+V A K+VEAL +V GV K+V+ F +L A+G S+ + ET++L W D++ + VRD+P T L R +F+LYLG+ P+S AK FA
Sbjct: 36 KEVVDKVTGLVFPMHRILPHGGRGRELSLLGVGPRRKNLFVVEVNVYAVGLYLETSQL-SRLKAFRGKSSEALAKEAKYYATLMKEGSGLNRALYLTFARTVPAGKIVEALAAVDGVKKEVMADFKKSLLTAIGSSLKEKETLTLAWTPDDRLSLFVRDKPVKTFPSLELARGIFNLYLGEKPISPEAKKGFA 227
BLAST of mRNA_H-elongata_contig16568.4140.1 vs. uniprot
Match: A0A835ZLC9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLC9_9STRA) HSP 1 Score: 132 bits (333), Expect = 2.340e-30 Identity = 101/313 (32.27%), Postives = 135/313 (43.13%), Query Frame = 2
Query: 704 VVDVATGLALPRTKRFSRS-DLTCLGAGVRAKSIAVAKINVYTVGL----YVDPKGARGALRKYTGLDPARLRKDASVFKVL----------------------------------------------------------------------------------------------GAAGFSKYLHLVFARSVGAKKVVEALTSVKGVNKDVLDRFSAIMLDAVGGSIGKGETVSLGWEGKDKMVVLVRDRPAGTVIDAALPRAVF------------------------DLYLGDTPVSLAAKSAFAEGLAA 1273
VV+ ATG++L T F S L C+GAGVRAKS+AV +NVY +GL YV+ + A AL KY G+ PA KDA ++ L A + +YL L FAR V A KV +ALT+V+GV DVL F+ ++ A+GG++ G+T++LGWEGKD++VV+VR + AG V DAALP A+F LYLG PVS AK+AFA G++A
Sbjct: 116 VVEPATGISLRATDTFGGSAPLRCVGAGVRAKSLAVVSVNVYALGLCVALYVETRAAAKALAKYAGVAPAERAKDAGFYEELMKPHPYLMPNPNVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMKRAXXXXXXXXXTKVSVLVSSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXPTAAYPRYLLLSFARDVSAAKVTDALTAVQGVAPDVLKAFAHLLGSAIGGAVHAGDTIALGWEGKDRLVVVVRGKKAGEVKDAALPGAIFKRSVMPISDARPFCRCALLPPLRAQLYLGSDPVSPPAKAAFASGVSA 428
BLAST of mRNA_H-elongata_contig16568.4140.1 vs. uniprot
Match: W7TMS0_9STRA (Chalcone isomerase-like protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TMS0_9STRA) HSP 1 Score: 134 bits (337), Expect = 4.310e-30 Identity = 77/193 (39.90%), Postives = 113/193 (58.55%), Query Frame = 2
Query: 698 KEVVDVATGLALPRTKRFSRS----DLTCLGAGVRAKSIAVAKINVYTVGLYVDPKGARGALRKYTGLDPARLRKDASVFKVL--GAAGFSKYLHLVFARSVGAKKVVEALTSVKGVNKDVLDRFSAIMLDAVGGSIGKGETVSLGWEGKDKMVVLVRDRPAGTVIDAALPRAVFDLYLGDTPVSLAAKSAFA 1258
KEVVD TGL P + +LT LG G R K++ V ++NVY VGLY++ G L+ + G L K+A + L +G ++ L+L+FAR+V A K+VEAL +V GV K+V+ F +L A+G S+ + ET++L W D++ + VRD+P T L R +F+LYLG+ P+S AK FA
Sbjct: 400 KEVVDKVTGLVFPMHRILPHGGRGRELTLLGVGPRRKNLFVVEVNVYAVGLYLETS-LLGRLKAFRGKSSEALAKEAKYYATLMKEGSGLNRALYLIFARTVPAGKIVEALAAVDGVKKEVMADFKKSLLAAIGSSLKEKETLTLAWTPDDRLSLFVRDKPVKTFPSLELARGIFNLYLGEKPISPEAKKGFA 591
BLAST of mRNA_H-elongata_contig16568.4140.1 vs. uniprot
Match: A0A835Z7E7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7E7_9STRA) HSP 1 Score: 130 bits (326), Expect = 6.530e-30 Identity = 78/198 (39.39%), Postives = 118/198 (59.60%), Query Frame = 2
Query: 689 PLSKEVVDVATGLALPRTKRFSRSD-LTCLGAGVRAKSIAV-AKINVYTVGLYVDPKGARGALRKYTGLDPARLRKDASVFKVLGAAG-FSKYLHLVFARSVGAKKVVEALTSVKGVNKDVLDRFSAIMLDAVGGSIGK-GETVSLGWEGKDKMVVLVRDRPAGTVIDAALPRAVFDLYLGDTPVSLAAKSAFAEGLA 1270
P ++V+ ATG+ L T F+ S LTC+G GVR + + ++VY +GLY+D GAR AL+ + L L + + L G F++Y+ L F R V KV +ALT+V+GV ++D + ++ A+G + G+T++LG+EGKD++VV+ + G V LP AVF LYLGD P+ AAK A A+G+A
Sbjct: 149 PRKTDLVEPATGIVLWPTDSFNGSPPLTCVGLGVRTVPVLYFSSVHVYVMGLYIDAVGARKALKAFLPLPAEDLAQKPEFYSALLKPGVFTRYIVLAFNRKVSTLKVADALTAVEGVPPPIVDAYRRLLEGALGEKGARPGDTLALGFEGKDRLVVVANGKTHGAVRSTVLPAAVFKLYLGDDPIIPAAKRAVADGVA 346 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16568.4140.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig16568.4140.1 >prot_H-elongata_contig16568.4140.1 ID=prot_H-elongata_contig16568.4140.1|Name=mRNA_H-elongata_contig16568.4140.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=286bp MPSRQAGSLAVAAAFALLAVFIFCAQEKHRAWCTKSLSMPRFADDGTSGPback to top mRNA from alignment at H-elongata_contig16568:1361..4105+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig16568.4140.1 ID=mRNA_H-elongata_contig16568.4140.1|Name=mRNA_H-elongata_contig16568.4140.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2745bp|location=Sequence derived from alignment at H-elongata_contig16568:1361..4105+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig16568:1361..4105+ >mRNA_H-elongata_contig16568.4140.1 ID=mRNA_H-elongata_contig16568.4140.1|Name=mRNA_H-elongata_contig16568.4140.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1716bp|location=Sequence derived from alignment at H-elongata_contig16568:1361..4105+ (Himanthalia elongata Himel1 dioecious)back to top |