mRNA_H-elongata_contig16568.4140.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig16568.4140.1
Unique NamemRNA_H-elongata_contig16568.4140.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig16568.4140.1 vs. uniprot
Match: D7G2G9_ECTSI (Similar to Chalcone Isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2G9_ECTSI)

HSP 1 Score: 256 bits (654), Expect = 2.480e-79
Identity = 131/202 (64.85%), Postives = 164/202 (81.19%), Query Frame = 2
Query:  689 PLSKEVVDVATGLALPRTKRF--SRSDLTCLGAGVRAKSIAVAKINVYTVGLYVDPKGARGALRKYTGLDPARLRKDASVFKVLGAAG-FSKYLHLVFARSVGAKKVVEALTSVKGVNKDVLDRFSAIMLDAVGGSIGKGETVSLGWEGKDKMVVLVRDRPAGTVIDAALPRAVFDLYLGDTPVSLAAKSAFAEGLAAFLSS 1285
            PLS +V D ATGL LPRTK+F  S++ L CLG GVR KS+A   +NVYTVGLYV+PKGAR AL+ Y G DP  L KD SV++VLG AG FSKYLHLVFARSVGA+KVV+A T+VKGVN+DVLD+FS++ ++ VG SI + E+V+LGWEGKD++VVLVRD+  G+VID +LP +VF+L+LG  PVS  AK+AFAEG+ AFL+S
Sbjct:   28 PLSPDVRDPATGLVLPRTKQFASSKTGLVCLGVGVRVKSVAFVNVNVYTVGLYVEPKGARKALKSYAGRDPEELSKDKSVYRVLGGAGDFSKYLHLVFARSVGAQKVVDAFTAVKGVNQDVLDKFSSLTMEGVGKSINREESVTLGWEGKDRLVVLVRDKEIGSVIDESLPASVFNLFLGSDPVSPVAKTAFAEGVPAFLAS 229          
BLAST of mRNA_H-elongata_contig16568.4140.1 vs. uniprot
Match: A0A6H5KHX0_9PHAE (FAPb protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHX0_9PHAE)

HSP 1 Score: 254 bits (648), Expect = 8.420e-77
Identity = 130/202 (64.36%), Postives = 162/202 (80.20%), Query Frame = 2
Query:  689 PLSKEVVDVATGLALPRTKRF--SRSDLTCLGAGVRAKSIAVAKINVYTVGLYVDPKGARGALRKYTGLDPARLRKDASVFKVLGAAG-FSKYLHLVFARSVGAKKVVEALTSVKGVNKDVLDRFSAIMLDAVGGSIGKGETVSLGWEGKDKMVVLVRDRPAGTVIDAALPRAVFDLYLGDTPVSLAAKSAFAEGLAAFLSS 1285
            PLS +V D ATGL LPRTK+F  S++ L CLG GVR KS+A   +NVYTVGLYV+PKGAR AL+ Y G DP  L KD SV++VLG AG FSKYLHLVFARSVGA+KVV+A T+VKGVN+DVLD+FS++ ++ VG SI + E+V+LGWEGKD++VVLVRD+  G++ID ALP +VF L+LG  PVS  AK+AFAEG+  FL+S
Sbjct:  146 PLSPDVRDPATGLVLPRTKQFASSKTGLVCLGVGVRVKSVAFVTVNVYTVGLYVEPKGARKALKSYAGRDPEELSKDKSVYRVLGGAGDFSKYLHLVFARSVGAQKVVDAFTAVKGVNQDVLDKFSSLTMEGVGKSIDREESVTLGWEGKDRLVVLVRDKEIGSIIDEALPASVFSLFLGSDPVSPVAKTAFAEGVPPFLAS 347          
BLAST of mRNA_H-elongata_contig16568.4140.1 vs. uniprot
Match: A0A0G4GUV1_VITBC (Chalcone_isomerase domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GUV1_VITBC)

HSP 1 Score: 160 bits (406), Expect = 6.050e-43
Identity = 86/199 (43.22%), Postives = 125/199 (62.81%), Query Frame = 2
Query:  689 PLSKEVVDVATGLALPRTKRFSRSD-LTCLGAGVRAKSIAVAKINVYTVGLYVDPKGARGALRKYTGLDPARLRKDASVFKVLGAAGFSKYLHLVFARSVGAKKVVEALTSVKGVNKDVLDRFSAIMLDAVGGSIGKGETVSLGWEGKDKMVVLVRDRPAGTVIDAALPRAVFDLYLGDTPVSLAAKSAFAEGLAAFLS 1282
            P++  + D  TG+  P    F  +  +T LGAG R K++ +AK+NVY+VGLYV+PK A  AL  + G     L  D   +  L      K + L FAR+VGA KV +AL++VKGV  +V+  F +++   +G SI K ET+++GW    ++ VL+R +PAGTV+DA LP+A F+LYLG TPVS+ AK AF + +A+  S
Sbjct:    4 PVAAVLKDKVTGIEFPCEATFPGTPKMTLLGAGPRRKNLGIAKVNVYSVGLYVEPKEAAKALSSFKGESEESLMNDDRFYDTLLGKEVPKLVLLKFARTVGAHKVADALSAVKGVEPEVVSEFCSLLEKGMGASIKKAETIAMGWTEDQRLDVLIRGQPAGTVVDAKLPKAFFELYLGKTPVSMEAKHAFVKRVASLFS 202          
BLAST of mRNA_H-elongata_contig16568.4140.1 vs. uniprot
Match: A0A6S9GES1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9GES1_HETAK)

HSP 1 Score: 164 bits (415), Expect = 1.470e-42
Identity = 94/199 (47.24%), Postives = 125/199 (62.81%), Query Frame = 2
Query:  671 APSSSSPLSKEVVDVATGLALPRTKRFSRSDLTCLGAGVRAKSIAVAKINVYTVGLYVDPKGARGALRKYTGLDPARLRKDASVFKVLGAAGFSKYLHLVFARSVGAKKVVEALTSVKGVNKDVLDRFSAIMLDAVGGSIGKGETVSLGWEGKDKMVVLVRDRPAGTVIDAALPRAVFDLYLGDTPVSLAAKSAFAEGL 1267
            AP + +P +  + D ATG+A    K F  + L  +GAGVRAK++ VA +NVY+V LYVD   A  AL  Y G           VF VL A  F+K ++L FAR VG++K+++ALT+V+GV    LD FSA++L A+GG IG  ET++LG++    M V VR+  AGTV DA L  AVF LYLG +PVS  AK AF  G+
Sbjct:  154 APGTLAPGATSLTDDATGIAFDGVKAFGGAKLAAVGAGVRAKNLGVAMVNVYSVCLYVDKPKAAKALATYKG------NPGPGVFDVLMAKNFNKVMYLKFARGVGSQKIIDALTAVEGVPAATLDEFSALLLGAMGGQIGASETIALGFDASGSMSVYVREALAGTVADATLAPAVFKLYLGASPVSQPAKDAFGAGV 346          
BLAST of mRNA_H-elongata_contig16568.4140.1 vs. uniprot
Match: A0A0G4GWT2_9ALVE (Chalcone_isomerase domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4GWT2_9ALVE)

HSP 1 Score: 158 bits (399), Expect = 1.160e-41
Identity = 92/193 (47.67%), Postives = 121/193 (62.69%), Query Frame = 2
Query:  689 PLSKEVVDVATGLALPRTKRFSRSD-LTCLGAGVRAKSI-AVAKINVYTVGLYVDPKGARGALRKYTGLDPARLRKDASVFKVLGAAGFSKYLHLVFARSVGAKKVVEALTSVKGVNKDVLDRFSAIMLDAVGGSIGKGETVSLGWEGKDKMVVLVRDRPAGTVIDAALPRAVFDLYLGDTPVSLAAKSAFAE 1261
            PL+  + D ATGL       F  S  +T LGAGVRAK++     +NVY+VGLYV+P  AR  L  +  ++ A L K    +K L      K +HL FARSVGA K+VEALTS+ GV ++ L +FS ++LD++G SIG  ETV+L     D + V+VR + AG+V D+ LP+A FDLYLG  PVS  AK AFA 
Sbjct:   31 PLAAILTDAATGLDFETDVSFPSSPKMTLLGAGVRAKALLGPIAVNVYSVGLYVEPSKARQTLSGFKTIEEAELAKKEDFYKALMKEDLPKAMHLKFARSVGASKIVEALTSLNGVPEESLSKFSKLLLDSIGSSIGYKETVTLSSSKPDTLDVIVRGKHAGSVRDSKLPKAFFDLYLGKNPVSSEAKKAFAS 223          
BLAST of mRNA_H-elongata_contig16568.4140.1 vs. uniprot
Match: A0A7S2UYK7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UYK7_9STRA)

HSP 1 Score: 141 bits (356), Expect = 8.850e-36
Identity = 81/181 (44.75%), Postives = 110/181 (60.77%), Query Frame = 2
Query:  680 SSSPLSKEVVDVATGLALPRTKRFSRSD----LTCLGAGVRAKS-IAVAKINVYTVGLYVDPKGARGALRKYTGLDPARLRKDASVFKVLGAAGFSKYLHLVFARSVGAKKVVEALTSVKGVNKDVLDRFSAIMLDAVGGSIGKGETVSLGWEGKDKMVVLVRDRPAGTVIDAALPRAVFD 1207
            SSS  + +V +  TG+  P TK FS +     LT  G GVR K+ +   K+NVY +GLYVDP  A  A  KY G D   + KD   FK+L + GF+K +++ +AR+VG  KVV+AL  V   +   LD F  +++   G +IG  ET++LGWEGKDK+VV VRD+  GTV  A L  AVF+
Sbjct:   23 SSSSAADKVTEPVTGIDFPVTKSFSLNSTSPTLTLTGVGVRVKALVGPLKVNVYGMGLYVDPSRAARAFSKYKGKDAKEVAKDDDFFKILHSPGFAKAIYIDYARAVGVDKVVDALRLVPTEDTAALDYFCDLLVIGTGSTIGNRETMTLGWEGKDKLVVQVRDKTVGTVTSAKLVEAVFE 203          
BLAST of mRNA_H-elongata_contig16568.4140.1 vs. uniprot
Match: A0A4D9CUC0_9STRA (Chalcone_isomerase domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CUC0_9STRA)

HSP 1 Score: 129 bits (325), Expect = 5.450e-31
Identity = 75/193 (38.86%), Postives = 111/193 (57.51%), Query Frame = 2
Query:  698 KEVVDVATGLALPRTKRFSRS----DLTCLGAGVRAKSIAVAKINVYTVGLYVDPKGARGALRKYTGLDPARLRKDASVFKVL--GAAGFSKYLHLVFARSVGAKKVVEALTSVKGVNKDVLDRFSAIMLDAVGGSIGKGETVSLGWEGKDKMVVLVRDRPAGTVIDAALPRAVFDLYLGDTPVSLAAKSAFA 1258
            KEVVD  TGL  P  +         +L+ LG G R K++ V ++NVY VGLY++       L+ + G     L K+A  +  L    +G ++ L+L FAR+V A K+VEAL +V GV K+V+  F   +L A+G S+ + ET++L W   D++ + VRD+P  T     L R +F+LYLG+ P+S  AK  FA
Sbjct:   36 KEVVDKVTGLVFPMHRILPHGGRGRELSLLGVGPRRKNLFVVEVNVYAVGLYLETSQL-SRLKAFRGKSSEALAKEAKYYATLMKEGSGLNRALYLTFARTVPAGKIVEALAAVDGVKKEVMADFKKSLLTAIGSSLKEKETLTLAWTPDDRLSLFVRDKPVKTFPSLELARGIFNLYLGEKPISPEAKKGFA 227          
BLAST of mRNA_H-elongata_contig16568.4140.1 vs. uniprot
Match: A0A835ZLC9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLC9_9STRA)

HSP 1 Score: 132 bits (333), Expect = 2.340e-30
Identity = 101/313 (32.27%), Postives = 135/313 (43.13%), Query Frame = 2
Query:  704 VVDVATGLALPRTKRFSRS-DLTCLGAGVRAKSIAVAKINVYTVGL----YVDPKGARGALRKYTGLDPARLRKDASVFKVL----------------------------------------------------------------------------------------------GAAGFSKYLHLVFARSVGAKKVVEALTSVKGVNKDVLDRFSAIMLDAVGGSIGKGETVSLGWEGKDKMVVLVRDRPAGTVIDAALPRAVF------------------------DLYLGDTPVSLAAKSAFAEGLAA 1273
            VV+ ATG++L  T  F  S  L C+GAGVRAKS+AV  +NVY +GL    YV+ + A  AL KY G+ PA   KDA  ++ L                                                                                                A + +YL L FAR V A KV +ALT+V+GV  DVL  F+ ++  A+GG++  G+T++LGWEGKD++VV+VR + AG V DAALP A+F                         LYLG  PVS  AK+AFA G++A
Sbjct:  116 VVEPATGISLRATDTFGGSAPLRCVGAGVRAKSLAVVSVNVYALGLCVALYVETRAAAKALAKYAGVAPAERAKDAGFYEELMKPHPYLMPNPNVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMKRAXXXXXXXXXTKVSVLVSSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXPTAAYPRYLLLSFARDVSAAKVTDALTAVQGVAPDVLKAFAHLLGSAIGGAVHAGDTIALGWEGKDRLVVVVRGKKAGEVKDAALPGAIFKRSVMPISDARPFCRCALLPPLRAQLYLGSDPVSPPAKAAFASGVSA 428          
BLAST of mRNA_H-elongata_contig16568.4140.1 vs. uniprot
Match: W7TMS0_9STRA (Chalcone isomerase-like protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TMS0_9STRA)

HSP 1 Score: 134 bits (337), Expect = 4.310e-30
Identity = 77/193 (39.90%), Postives = 113/193 (58.55%), Query Frame = 2
Query:  698 KEVVDVATGLALPRTKRFSRS----DLTCLGAGVRAKSIAVAKINVYTVGLYVDPKGARGALRKYTGLDPARLRKDASVFKVL--GAAGFSKYLHLVFARSVGAKKVVEALTSVKGVNKDVLDRFSAIMLDAVGGSIGKGETVSLGWEGKDKMVVLVRDRPAGTVIDAALPRAVFDLYLGDTPVSLAAKSAFA 1258
            KEVVD  TGL  P  +         +LT LG G R K++ V ++NVY VGLY++     G L+ + G     L K+A  +  L    +G ++ L+L+FAR+V A K+VEAL +V GV K+V+  F   +L A+G S+ + ET++L W   D++ + VRD+P  T     L R +F+LYLG+ P+S  AK  FA
Sbjct:  400 KEVVDKVTGLVFPMHRILPHGGRGRELTLLGVGPRRKNLFVVEVNVYAVGLYLETS-LLGRLKAFRGKSSEALAKEAKYYATLMKEGSGLNRALYLIFARTVPAGKIVEALAAVDGVKKEVMADFKKSLLAAIGSSLKEKETLTLAWTPDDRLSLFVRDKPVKTFPSLELARGIFNLYLGEKPISPEAKKGFA 591          
BLAST of mRNA_H-elongata_contig16568.4140.1 vs. uniprot
Match: A0A835Z7E7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7E7_9STRA)

HSP 1 Score: 130 bits (326), Expect = 6.530e-30
Identity = 78/198 (39.39%), Postives = 118/198 (59.60%), Query Frame = 2
Query:  689 PLSKEVVDVATGLALPRTKRFSRSD-LTCLGAGVRAKSIAV-AKINVYTVGLYVDPKGARGALRKYTGLDPARLRKDASVFKVLGAAG-FSKYLHLVFARSVGAKKVVEALTSVKGVNKDVLDRFSAIMLDAVGGSIGK-GETVSLGWEGKDKMVVLVRDRPAGTVIDAALPRAVFDLYLGDTPVSLAAKSAFAEGLA 1270
            P   ++V+ ATG+ L  T  F+ S  LTC+G GVR   +   + ++VY +GLY+D  GAR AL+ +  L    L +    +  L   G F++Y+ L F R V   KV +ALT+V+GV   ++D +  ++  A+G    + G+T++LG+EGKD++VV+   +  G V    LP AVF LYLGD P+  AAK A A+G+A
Sbjct:  149 PRKTDLVEPATGIVLWPTDSFNGSPPLTCVGLGVRTVPVLYFSSVHVYVMGLYIDAVGARKALKAFLPLPAEDLAQKPEFYSALLKPGVFTRYIVLAFNRKVSTLKVADALTAVEGVPPPIVDAYRRLLEGALGEKGARPGDTLALGFEGKDRLVVVANGKTHGAVRSTVLPAAVFKLYLGDDPIIPAAKRAVADGVA 346          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16568.4140.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2G9_ECTSI2.480e-7964.85Similar to Chalcone Isomerase n=1 Tax=Ectocarpus s... [more]
A0A6H5KHX0_9PHAE8.420e-7764.36FAPb protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A0G4GUV1_VITBC6.050e-4343.22Chalcone_isomerase domain-containing protein n=2 T... [more]
A0A6S9GES1_HETAK1.470e-4247.24Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A0G4GWT2_9ALVE1.160e-4147.67Chalcone_isomerase domain-containing protein n=1 T... [more]
A0A7S2UYK7_9STRA8.850e-3644.75Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A4D9CUC0_9STRA5.450e-3138.86Chalcone_isomerase domain-containing protein n=1 T... [more]
A0A835ZLC9_9STRA2.340e-3032.27Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
W7TMS0_9STRA4.310e-3039.90Chalcone isomerase-like protein n=2 Tax=Nannochlor... [more]
A0A835Z7E7_9STRA6.530e-3039.39Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16568contigH-elongata_contig16568:1361..4105 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score85.1
Seed ortholog evalue5.7e-14
Seed eggNOG ortholog296587.XP_002503292.1
EggNOG free text desc.Chalcone isomerase-like
EggNOG OGs2E0MF@1,2S81H@2759,34IMC@3041,37WXY@33090
COG Functional cat.S
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionChalcone Isomerase-like
Ec32 orthologEc-00_005930.1
Exons3
Model size1511
Cds size858
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16568.4140.1prot_H-elongata_contig16568.4140.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig16568 2607..3882 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929969.8576503-UTR-H-elongata_contig16568:1360..16031622929969.8576503-UTR-H-elongata_contig16568:1360..1603Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16568 1361..1603 +
1691679228.6466522-UTR-H-elongata_contig16568:1360..16031691679228.6466522-UTR-H-elongata_contig16568:1360..1603Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16568 1361..1603 +
1622929969.874882-UTR-H-elongata_contig16568:2419..26061622929969.874882-UTR-H-elongata_contig16568:2419..2606Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16568 2420..2606 +
1691679228.658348-UTR-H-elongata_contig16568:2419..26061691679228.658348-UTR-H-elongata_contig16568:2419..2606Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16568 2420..2606 +
1622929969.9242058-UTR-H-elongata_contig16568:3882..41051622929969.9242058-UTR-H-elongata_contig16568:3882..4105Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16568 3883..4105 +
1691679228.6855474-UTR-H-elongata_contig16568:3882..41051691679228.6855474-UTR-H-elongata_contig16568:3882..4105Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16568 3883..4105 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929969.8896363-CDS-H-elongata_contig16568:2606..32261622929969.8896363-CDS-H-elongata_contig16568:2606..3226Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16568 2607..3226 +
1691679228.667265-CDS-H-elongata_contig16568:2606..32261691679228.667265-CDS-H-elongata_contig16568:2606..3226Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16568 2607..3226 +
1622929969.9068058-CDS-H-elongata_contig16568:3644..38821622929969.9068058-CDS-H-elongata_contig16568:3644..3882Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16568 3645..3882 +
1691679228.6766253-CDS-H-elongata_contig16568:3644..38821691679228.6766253-CDS-H-elongata_contig16568:3644..3882Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16568 3645..3882 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig16568.4140.1

>prot_H-elongata_contig16568.4140.1 ID=prot_H-elongata_contig16568.4140.1|Name=mRNA_H-elongata_contig16568.4140.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=286bp
MPSRQAGSLAVAAAFALLAVFIFCAQEKHRAWCTKSLSMPRFADDGTSGP
MAHSGVARTSGVWSGDAKQGRGKRKGEGGAAPSSSSPLSKEVVDVATGLA
LPRTKRFSRSDLTCLGAGVRAKSIAVAKINVYTVGLYVDPKGARGALRKY
TGLDPARLRKDASVFKVLGAAGFSKYLHLVFARSVGAKKVVEALTSVKGV
NKDVLDRFSAIMLDAVGGSIGKGETVSLGWEGKDKMVVLVRDRPAGTVID
AALPRAVFDLYLGDTPVSLAAKSAFAEGLAAFLSS*
back to top

mRNA from alignment at H-elongata_contig16568:1361..4105+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig16568.4140.1 ID=mRNA_H-elongata_contig16568.4140.1|Name=mRNA_H-elongata_contig16568.4140.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2745bp|location=Sequence derived from alignment at H-elongata_contig16568:1361..4105+ (Himanthalia elongata Himel1 dioecious)
AGAACTCATTTTGGCGCCATCGAGCGTTGTCCTTAAGTACCAACACCGAG GGCTGTTTCACATCGACGATTTTTTAGTGATATTTTCCTACCCACGAAAA CTTCAGTGATCGCGCCCTCCATATCCTCTTCCTGTTCGGCATATTTTCTA TTTTCCCGGGAAAGGGACACTATTTCTGACCCTCAGGTGGCTTTTTATAA TTACTGTTCTGACATCCGAAGCTCGGGAGCATCGTGCTGGACGGTGAGCC TTTGGACAGGATTGCCCACGACACACAAAGCCATCCCTGCGCGTAGCTGG CTACTTGCACTAATCTTGCTGTTTTCCAGAGGAGCCAGCGCGATTTTTGT GCACGGACTTCAAAATACCCGAGTCTCATATATCCCGCGACGTTCAGTAA ATATGTTTAGGGTAGGGCGTCGTGTGAAGGGGTCTTGGGAGCTCGACGCG TGTTTCCACTGTATGATGCAGCAAACAAAGTAACCATTTTTATGTCGAAA TACTGCCCTCTTTTCCGTACTCTTCGATGTAGTAGACCGCTTTACCCGCG CTGTGGGATGCAGAGGCGGAAAATACGTTTGCACCTGTCGGTCGCTTTTG TAGGCGGAATCCCGTCCGTTGATCACTTATTTTTGCTCTGGGCATTCTTG GTCTGGAAAATACTTGTTCGCCGGCTCATGTAGAGGGGGTGAAAGGAGGC GAGTGATACCTAGCTCAATGGACAAGGGGTGGGTAGGTGGGTCACGTGGT GTTGATGGCGTTACTGCCCTTGTATCCTGAAATAACAACATAAGTATGTA CATGTGCACACACGACCACACACAGAGTCACGTGATCCGATTGCATCTCA TTCCAACCCTCCGAACATCCACACCTTCTTAGCGCCGTAAGAGGTACCAT CCAGGGGACCAACTATCGTCAGGTTCGAATGTGTACATTACTATCTTTGA GCACAAAATCGTCACACGTGAGTATATATTTTTAAAGGATATAGTTGAAT CCTCGGTCTAACGTCTGCCCTCCGCCCCCCTCCCTCCGCCGATAAACGCA CAAAAGCAGCACAGCGATAAAGTGAAGGCGAGGGCAACCCCGTATTCTCC GTAGAGGTGAAATATCGTCACCTCGTATGCTACGTAAAGGTGAAAGCTCG TGATATAGCCGACACGGTACCACTTGGTGGAATCCGGCATCGGCAATACT GTACCGCAAGAGTACCAAACCCTGCCCATTCTTTAATAGTAATAGTATGC CGTCAAGACAAGCAGGCAGCCTGGCAGTCGCTGCGGCCTTCGCCCTGCTC GCCGTCTTCATCTTCTGCGCCCAGGAGAAGCACAGAGCGTGGTGCACCAA ATCTCTCTCCATGCCGAGGTTCGCCGACGACGGCACTTCCGGCCCGATGG CCCACTCTGGCGTCGCGCGCACATCTGGCGTCTGGAGCGGCGATGCGAAG CAGGGGAGGGGAAAGCGAAAGGGTGAAGGGGGTGCAGCCCCTTCCTCCTC GTCGCCGCTGTCGAAGGAGGTCGTGGACGTTGCGACCGGCCTGGCGTTGC CTCGAACGAAGCGGTTCTCAAGGTCAGACCTGACTTGCCTCGGCGCAGGG GTGCGCGCGAAATCGATAGCGGTCGCGAAGATTAACGTGTACACCGTTGG ACTGTACGTGGACCCGAAGGGCGCACGGGGGGCCCTACGGAAGTACACTG GGTTGGATCCGGCCAGGCTGAGGAAAGACGCCTCCGTCTTCAAGGTTCTG GGCGCGGCTGGGTTCAGCAAGTACCTGCATCTCGTGTTCGCGAGAAGCGT TGGGGCTAAGAAAGTGGTGGAGGCGTTGACCTCGGTAAAGGGAGTGAACA AAGATGTCCTTGACAGGTGAGGTTGAAATGCGGGGGGGGGGGACCAAGGA CGTGCGTGATGGCTATGAGCAATTTCACGAGGTCGTTGATGGAGTAGTAA AGGGATTTATAGCCCCCGGGATGTAATAGCTGCCGCGACCGCGGGAGAAC GCGATCTTAGAAGCTCATCGCGATGTGCTCGGTCACGTGCTTGCATGCTG GTCCTTTTTCGACATCAACACCGTCACCCTTTAGTGTAATCTTTGTCGAT AAATTTCATTATTCTGCTCGGCAAGCGAGCTTTATTCGGTATGTTGGATG ATTGCTTCCCGTGGCAACCCCCACTGATCCCTTTTTTGCGCGCGCATCAT CGCCATCTGTGGCACTTAATGATCCCCAATATCTTTGACTGCTTCCGTCC GCTGCGGTGGCATGCCCCGCTTTCACGCAACCAGGTTCTCCGCCATTATG CTAGATGCCGTGGGGGGAAGCATAGGCAAGGGGGAGACGGTCTCGCTGGG GTGGGAGGGAAAGGACAAGATGGTGGTATTGGTTCGAGACCGTCCCGCGG GTACCGTGATCGATGCCGCTCTTCCCCGAGCTGTCTTCGACCTCTACCTG GGCGATACTCCCGTCTCCCTGGCGGCAAAATCAGCCTTCGCGGAGGGGTT GGCCGCCTTTCTGTCCAGCTGACCGCGCCACTATAACACATGTCCGCGCG CGCTTCACCTGTTGGAATGATACATAATTTTACAGTATTACGAAGGGTGC CGCCTTTTTGCTGCTGTAGTTCAAAGCTCCCCTTGGTGCAGCGCTGGAAG GGATCGCTCCTTTGATGCAGATTGTTTTTGATCTGGGTCATCGCTATTTC TTCTACAATCCCGCATCGTGTGCTTCACAGCATTCCCCTTTTCGC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig16568:1361..4105+

>mRNA_H-elongata_contig16568.4140.1 ID=mRNA_H-elongata_contig16568.4140.1|Name=mRNA_H-elongata_contig16568.4140.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1716bp|location=Sequence derived from alignment at H-elongata_contig16568:1361..4105+ (Himanthalia elongata Himel1 dioecious)
ATGCCGTCAAGACAAGCAGGCAGCCTGGCAGTCGCTGCGGCCTTCGCCCT
GCTCGCCGTCTTCATCTTCTGCGCCCAGGAGAAGCACAGAGCGTGGTGCA
CCAAATCTCTCTCCATGCCGAGGTTCGCCGACGACGGCACTTCCGGCCCG
ATGGCCCACTCTGGCGTCGCGCGCACATCTGGCGTCTGGAGCGGCGATGC
GAAGCAGGGGAGGGGAAAGCGAAAGGGTGAAGGGGGTGCAGCCCCTTCCT
CCTCGTCGCCGCTGTCGAAGGAGGTCGTGGACGTTGCGACCGGCCTGGCG
TTGCCTCGAACGAAGCGGTTCTCAAGGTCAGACCTGACTTGCCTCGGCGC
AGGGGTGCGCGCGAAATCGATAGCGGTCGCGAAGATTAACGTGTACACCG
TTGGACTGTACGTGGACCCGAAGGGCGCACGGGGGGCCCTACGGAAGTAC
ACTGGGTTGGATCCGGCCAGGCTGAGGAAAGACGCCTCCGTCTTCAAGGT
TCTGGGCGCGGCTGGGTTCAGCAAGTACCTGCATCTCGTGTTCGCGAGAA
GCGTTGGGGCTAAGAAAGTGGTGGAGGCGTTGACCTCGGTAAAGGGAGTG
AACAAAGATGTCCTTGACAGATGCCGTCAAGACAAGCAGGCAGCCTGGCA
GTCGCTGCGGCCTTCGCCCTGCTCGCCGTCTTCATCTTCTGCGCCCAGGA
GAAGCACAGAGCGTGGTGCACCAAATCTCTCTCCATGCCGAGGTTCGCCG
ACGACGGCACTTCCGGCCCGATGGCCCACTCTGGCGTCGCGCGCACATCT
GGCGTCTGGAGCGGCGATGCGAAGCAGGGGAGGGGAAAGCGAAAGGGTGA
AGGGGGTGCAGCCCCTTCCTCCTCGTCGCCGCTGTCGAAGGAGGTCGTGG
ACGTTGCGACCGGCCTGGCGTTGCCTCGAACGAAGCGGTTCTCAAGGTCA
GACCTGACTTGCCTCGGCGCAGGGGTGCGCGCGAAATCGATAGCGGTCGC
GAAGATTAACGTGTACACCGTTGGACTGTACGTGGACCCGAAGGGCGCAC
GGGGGGCCCTACGGAAGTACACTGGGTTGGATCCGGCCAGGCTGAGGAAA
GACGCCTCCGTCTTCAAGGTTCTGGGCGCGGCTGGGTTCAGCAAGTACCT
GCATCTCGTGTTCGCGAGAAGCGTTGGGGCTAAGAAAGTGGTGGAGGCGT
TGACCTCGGTAAAGGGAGTGAACAAAGATGTCCTTGACAGGTTCTCCGCC
ATTATGCTAGATGCCGTGGGGGGAAGCATAGGCAAGGGGGAGACGGTCTC
GCTGGGGTGGGAGGGAAAGGACAAGATGGTGGTATTGGTTCGAGACCGTC
CCGCGGGTACCGTGATCGATGCCGCTCTTCCCCGAGCTGTCTTCGACCTC
TACCTGGGCGATACTCCCGTCTCCCTGGCGGCAAAATCAGCCTTCGCGGA
GGGGTTGGCCGCCTTTCTGTCCAGCTGAGTTCTCCGCCATTATGCTAGAT
GCCGTGGGGGGAAGCATAGGCAAGGGGGAGACGGTCTCGCTGGGGTGGGA
GGGAAAGGACAAGATGGTGGTATTGGTTCGAGACCGTCCCGCGGGTACCG
TGATCGATGCCGCTCTTCCCCGAGCTGTCTTCGACCTCTACCTGGGCGAT
ACTCCCGTCTCCCTGGCGGCAAAATCAGCCTTCGCGGAGGGGTTGGCCGC
CTTTCTGTCCAGCTGA
back to top