prot_H-elongata_contig16568.4139.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig16568.4139.1
Unique Name	prot_H-elongata_contig16568.4139.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	82

Homology

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BLAST of mRNA_H-elongata_contig16568.4139.1 vs. uniprot
Match: D7G2H0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2H0_ECTSI)

HSP 1 Score: 128 bits (321), Expect = 1.570e-34
Identity = 69/110 (62.73%), Postives = 75/110 (68.18%), Query Frame = 0

Query:    1 MDKAVDFLTQNWNYGPEVCLAAFSLFHSAR----------------------------VRKIEKAEGKPIFWAESLVLTFFMAFGGGILAPFLLGKPPVIFVNDLIVPLV 82
            M+ AVDFLTQNW YG EVCLAAF+LFHSAR                            VRKIEK  GK +FWAESLV+T+ MAFGGGILAPFLLGKPPV+FVNDLIVPLV
Sbjct:    1 MENAVDFLTQNWEYGAEVCLAAFALFHSAREIKQACDALRLACAGSGALTFKQKAKILVRKIEKDSGKQMFWAESLVMTYMMAFGGGILAPFLLGKPPVMFVNDLIVPLV 110

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BLAST of mRNA_H-elongata_contig16568.4139.1 vs. uniprot
Match: A0A835Z0I7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0I7_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 4.060e-20
Identity = 46/79 (58.23%), Postives = 58/79 (73.42%), Query Frame = 0

Query:    1 MDKAVDFLTQNWNYGPEVCLAAFSLFHSARVRKIEKAEGKPIFWAESLVLTFFMAFGGGILAPFLLGKPPVIFVNDLIV 79
            +D A DFL Q+  Y PEVCL  ++L  +ARV+       K ++WA+SLVLTF M FGGGI+APFLLGKPPVI +NDL+V
Sbjct:    7 LDTAHDFLLQDLPYMPEVCLFIYALVGAARVKS---GPAKNMYWAQSLVLTFLMCFGGGIVAPFLLGKPPVILINDLLV 82

[Close]

BLAST of mRNA_H-elongata_contig16568.4139.1 vs. uniprot
Match: A0A4D9CX56_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CX56_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 1.100e-8
Identity = 36/81 (44.44%), Postives = 43/81 (53.09%), Query Frame = 0

Query:    2 DKAVDFLTQNWNYGPEVCLAAFSLFHSARVRKIEKAEGKPIFWAESLVLTFFMAFGGGILAPFLLGKPPVIFVNDLIVPLV 82
            + A  FL   + Y  EVCL AF L  S RVR   +       W   LVL F   F GG + P   G+ PV+FVNDL+VPLV
Sbjct:   16 EVARKFLLMQYPYEFEVCLFAFCLGASMRVRPSAQYS-----WLHHLVLVFLTGFAGGTIIPMFFGRTPVLFVNDLLVPLV 91

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig16568.4139.1 vs. uniprot

BLAST of mRNA_H-elongata_contig16568.4139.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
D7G2H0_ECTSI	1.570e-34	62.73	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
A0A835Z0I7_9STRA	4.060e-20	58.23	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A4D9CX56_9STRA	1.100e-8	44.44	Uncharacterized protein n=2 Tax=Monodopsidaceae Ta...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 43..66
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 67..82
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 32..42
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 12..31
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..11
None	No IPR available	TMHMM	TMhelix		coord: 42..64

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig16568	contig	H-elongata_contig16568:20..1139 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig16568.4139.1	mRNA_H-elongata_contig16568.4139.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig16568 20..1139 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig16568.4139.1 ID=prot_H-elongata_contig16568.4139.1|Name=mRNA_H-elongata_contig16568.4139.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=82bp
MDKAVDFLTQNWNYGPEVCLAAFSLFHSARVRKIEKAEGKPIFWAESLVL
TFFMAFGGGILAPFLLGKPPVIFVNDLIVPLV