mRNA_H-elongata_contig165664.4136.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig165664.4136.1
Unique NamemRNA_H-elongata_contig165664.4136.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig165664.4136.1 vs. uniprot
Match: A0A6H5JD57_9PHAE (Coproporphyrinogen oxidase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JD57_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 3.740e-36
Identity = 65/67 (97.01%), Postives = 67/67 (100.00%), Query Frame = 1 
Query:    1 GGGISRVMSGGKVFEKAGVNLSVVYGTMPQEALRAATERGVDRAKGMAEGERVPFFACGLSSVMHPK 201
            GGGISRV++GGKVFEKAGVNLSVVYGTMPQEALRAATERGVDRAKGMAEGERVPFFACGLSSVMHPK
Sbjct:  118 GGGISRVLAGGKVFEKAGVNLSVVYGTMPQEALRAATERGVDRAKGMAEGERVPFFACGLSSVMHPK 184
[Close]
BLAST of mRNA_H-elongata_contig165664.4136.1 vs. uniprot
Match: A0A7R9Z8W0_9STRA (Coproporphyrinogen oxidase (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9Z8W0_9STRA)

HSP 1 Score: 125 bits (315), Expect = 9.430e-35
Identity = 61/67 (91.04%), Postives = 65/67 (97.01%), Query Frame = 1 
Query:    1 GGGISRVMSGGKVFEKAGVNLSVVYGTMPQEALRAATERGVDRAKGMAEGERVPFFACGLSSVMHPK 201
            GGG+SRV+SGG VFEKAGVNLSVVYG+MPQEAL+AATERGVDRAKGMA GERVPFFACGLSSVMHPK
Sbjct:  145 GGGMSRVLSGGDVFEKAGVNLSVVYGSMPQEALQAATERGVDRAKGMAPGERVPFFACGLSSVMHPK 211
[Close]
BLAST of mRNA_H-elongata_contig165664.4136.1 vs. uniprot
Match: B7G7A5_PHATC (Coproporphyrinogen oxidase n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G7A5_PHATC)

HSP 1 Score: 128 bits (321), Expect = 9.550e-35
Identity = 62/67 (92.54%), Postives = 66/67 (98.51%), Query Frame = 1 
Query:    1 GGGISRVMSGGKVFEKAGVNLSVVYGTMPQEALRAATERGVDRAKGMAEGERVPFFACGLSSVMHPK 201
            GGG+SRV+SGGKVFEKAGVNLSVVYG+MPQEAL+AATERGVDRAKGMA GERVPFFACGLSSVMHPK
Sbjct:   40 GGGMSRVLSGGKVFEKAGVNLSVVYGSMPQEALQAATERGVDRAKGMAPGERVPFFACGLSSVMHPK 106
[Close]
BLAST of mRNA_H-elongata_contig165664.4136.1 vs. uniprot
Match: A0A1E7G028_9STRA (Coproporphyrinogen oxidase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7G028_9STRA)

HSP 1 Score: 129 bits (324), Expect = 1.870e-34
Identity = 63/67 (94.03%), Postives = 66/67 (98.51%), Query Frame = 1 
Query:    1 GGGISRVMSGGKVFEKAGVNLSVVYGTMPQEALRAATERGVDRAKGMAEGERVPFFACGLSSVMHPK 201
            GGG+SRVMSGGKVFEKAGVNLSVVYG+MPQEAL+AATERGVDRAKGMA GERVPFFACGLSSVMHPK
Sbjct:  129 GGGMSRVMSGGKVFEKAGVNLSVVYGSMPQEALQAATERGVDRAKGMAPGERVPFFACGLSSVMHPK 195
[Close]
BLAST of mRNA_H-elongata_contig165664.4136.1 vs. uniprot
Match: A0A7S0C899_9STRA (Coproporphyrinogen oxidase n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C899_9STRA)

HSP 1 Score: 125 bits (314), Expect = 6.520e-34
Identity = 62/67 (92.54%), Postives = 64/67 (95.52%), Query Frame = 1 
Query:    1 GGGISRVMSGGKVFEKAGVNLSVVYGTMPQEALRAATERGVDRAKGMAEGERVPFFACGLSSVMHPK 201
            GGG+SRVMSGG VFEKAGVNLSVVYG+MPQEAL AATERGVDRAKGMA GERVPFFACGLSSVMHPK
Sbjct:   15 GGGMSRVMSGGDVFEKAGVNLSVVYGSMPQEALIAATERGVDRAKGMAPGERVPFFACGLSSVMHPK 81
[Close]
BLAST of mRNA_H-elongata_contig165664.4136.1 vs. uniprot
Match: A0A6V2PQX8_9STRA (Coproporphyrinogen oxidase n=3 Tax=Lithodesmiaceae TaxID=49247 RepID=A0A6V2PQX8_9STRA)

HSP 1 Score: 128 bits (321), Expect = 7.350e-34
Identity = 62/67 (92.54%), Postives = 66/67 (98.51%), Query Frame = 1 
Query:    1 GGGISRVMSGGKVFEKAGVNLSVVYGTMPQEALRAATERGVDRAKGMAEGERVPFFACGLSSVMHPK 201
            GGG+SRV+SGGKVFEKAGVNLSVVYG+MPQEAL+AATERGVDRAKGMA GERVPFFACGLSSVMHPK
Sbjct:  152 GGGMSRVLSGGKVFEKAGVNLSVVYGSMPQEALQAATERGVDRAKGMAPGERVPFFACGLSSVMHPK 218
[Close]
BLAST of mRNA_H-elongata_contig165664.4136.1 vs. uniprot
Match: A0A7S3Q8F2_9STRA (Coproporphyrinogen oxidase n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q8F2_9STRA)

HSP 1 Score: 127 bits (319), Expect = 1.090e-33
Identity = 62/67 (92.54%), Postives = 65/67 (97.01%), Query Frame = 1 
Query:    1 GGGISRVMSGGKVFEKAGVNLSVVYGTMPQEALRAATERGVDRAKGMAEGERVPFFACGLSSVMHPK 201
            GGG+SRV+SGGKVFEKAGVNLSVVYGTMPQEAL+AATERGVDRA GMA GERVPFFACGLSSVMHPK
Sbjct:  134 GGGMSRVLSGGKVFEKAGVNLSVVYGTMPQEALQAATERGVDRAAGMAPGERVPFFACGLSSVMHPK 200
[Close]
BLAST of mRNA_H-elongata_contig165664.4136.1 vs. uniprot
Match: A0A7S0Y8W8_9STRA (Coproporphyrinogen oxidase n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0Y8W8_9STRA)

HSP 1 Score: 127 bits (318), Expect = 1.370e-33
Identity = 62/67 (92.54%), Postives = 65/67 (97.01%), Query Frame = 1 
Query:    1 GGGISRVMSGGKVFEKAGVNLSVVYGTMPQEALRAATERGVDRAKGMAEGERVPFFACGLSSVMHPK 201
            GGG+SRVMSGG VFEKAGVNLSVVYG+MPQEAL+AATERGVDRAKGMA GERVPFFACGLSSVMHPK
Sbjct:  127 GGGMSRVMSGGDVFEKAGVNLSVVYGSMPQEALQAATERGVDRAKGMAPGERVPFFACGLSSVMHPK 193
[Close]
BLAST of mRNA_H-elongata_contig165664.4136.1 vs. uniprot
Match: A0A7S2L134_9STRA (Coproporphyrinogen oxidase n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2L134_9STRA)

HSP 1 Score: 127 bits (318), Expect = 1.440e-33
Identity = 61/67 (91.04%), Postives = 66/67 (98.51%), Query Frame = 1 
Query:    1 GGGISRVMSGGKVFEKAGVNLSVVYGTMPQEALRAATERGVDRAKGMAEGERVPFFACGLSSVMHPK 201
            GGG+SRV+SGGKVFEKAGVNLSVVYG+MPQEAL+AATERGVDRAKGMA GERVPFFACGLSSVMHP+
Sbjct:  130 GGGMSRVLSGGKVFEKAGVNLSVVYGSMPQEALQAATERGVDRAKGMAPGERVPFFACGLSSVMHPR 196
[Close]
BLAST of mRNA_H-elongata_contig165664.4136.1 vs. uniprot
Match: A0A7S1H0X1_9STRA (Coproporphyrinogen oxidase (Fragment) n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1H0X1_9STRA)

HSP 1 Score: 125 bits (313), Expect = 2.200e-33
Identity = 60/67 (89.55%), Postives = 65/67 (97.01%), Query Frame = 1 
Query:    1 GGGISRVMSGGKVFEKAGVNLSVVYGTMPQEALRAATERGVDRAKGMAEGERVPFFACGLSSVMHPK 201
            GGG+SRV+SGG VFEKAGVNLSVVYG+MPQEAL+AATERGVDRAKGMA GERVPFFACGLSSVMHP+
Sbjct:  122 GGGMSRVLSGGNVFEKAGVNLSVVYGSMPQEALQAATERGVDRAKGMAPGERVPFFACGLSSVMHPR 188
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig165664.4136.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JD57_9PHAE3.740e-3697.01Coproporphyrinogen oxidase n=2 Tax=Ectocarpus TaxI... [more]
A0A7R9Z8W0_9STRA9.430e-3591.04Coproporphyrinogen oxidase (Fragment) n=1 Tax=Pseu... [more]
B7G7A5_PHATC9.550e-3592.54Coproporphyrinogen oxidase n=2 Tax=Phaeodactylum t... [more]
A0A1E7G028_9STRA1.870e-3494.03Coproporphyrinogen oxidase n=1 Tax=Fragilariopsis ... [more]
A0A7S0C899_9STRA6.520e-3492.54Coproporphyrinogen oxidase n=1 Tax=Proboscia inerm... [more]
A0A6V2PQX8_9STRA7.350e-3492.54Coproporphyrinogen oxidase n=3 Tax=Lithodesmiaceae... [more]
A0A7S3Q8F2_9STRA1.090e-3392.54Coproporphyrinogen oxidase n=1 Tax=Chaetoceros deb... [more]
A0A7S0Y8W8_9STRA1.370e-3392.54Coproporphyrinogen oxidase n=1 Tax=Pseudo-nitzschi... [more]
A0A7S2L134_9STRA1.440e-3391.04Coproporphyrinogen oxidase n=2 Tax=Leptocylindrus ... [more]
A0A7S1H0X1_9STRA2.200e-3389.55Coproporphyrinogen oxidase (Fragment) n=1 Tax=Thal... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig165664contigH-elongata_contig165664:1..933 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score120.6
Seed ortholog evalue2.6e-25
Seed eggNOG ortholog2880.D7FL60
Preferred nameCPX1
KEGG rclassRC00884
KEGG koko:K00228
KEGG ReactionR03220
KEGG Pathwayko00860,ko01100,ko01110,map00860,map01100,map01110
KEGG ModuleM00121
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009719,GO:0009725,GO:0009735,GO:0010033,GO:0042221,GO:0042802,GO:0042803,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046983,GO:0048046,GO:0050896
EggNOG free text desc.coproporphyrinogen oxidase activity
EggNOG OGsCOG0408@1,KOG1518@2759
EC1.3.3.3
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptioncoproporphyrinogen oxidase (aerobic), putative chloroplast precursor
Ec32 orthologEc-19_005390.1
Exons2
Model size201
Cds size180
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig165664.4136.1prot_H-elongata_contig165664.4136.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig165664 22..933 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929969.5533986-UTR-H-elongata_contig165664:0..211622929969.5533986-UTR-H-elongata_contig165664:0..21Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig165664 1..21 +
1691679228.5598643-UTR-H-elongata_contig165664:0..211691679228.5598643-UTR-H-elongata_contig165664:0..21Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig165664 1..21 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929969.5682397-CDS-H-elongata_contig165664:21..931622929969.5682397-CDS-H-elongata_contig165664:21..93Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig165664 22..93 +
1691679228.572258-CDS-H-elongata_contig165664:21..931691679228.572258-CDS-H-elongata_contig165664:21..93Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig165664 22..93 +
1622929969.583242-CDS-H-elongata_contig165664:825..9331622929969.583242-CDS-H-elongata_contig165664:825..933Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig165664 826..933 +
1691679228.584773-CDS-H-elongata_contig165664:825..9331691679228.584773-CDS-H-elongata_contig165664:825..933Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig165664 826..933 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig165664.4136.1

>prot_H-elongata_contig165664.4136.1 ID=prot_H-elongata_contig165664.4136.1|Name=mRNA_H-elongata_contig165664.4136.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=60bp
MSGGKVFEKAGVNLSVVYGTMPQEALRAATERGVDRAKGMAEGERVPFFA
CGLSSVMHPK
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mRNA from alignment at H-elongata_contig165664:1..933+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig165664.4136.1 ID=mRNA_H-elongata_contig165664.4136.1|Name=mRNA_H-elongata_contig165664.4136.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=933bp|location=Sequence derived from alignment at H-elongata_contig165664:1..933+ (Himanthalia elongata Himel1 dioecious)
GGCGGCGGCATCTCCCGAGTAATGTCGGGAGGCAAGGTGTTTGAGAAGGC
GGGGGTCAACCTGTCCGTCGTTTACGGCACCATGCCGCAGGAGGTGGGTG
CAGTAGTACATTATAGTATGGCGATTACTAGCCGAGACAGCCAAGAGATG
CAGCCGCTAATGGCCTTGTTCCGGGCGAGAAGAGAAGCCCCTGGTTGGTT
AATGGACGTAGTAAATGCTCCTGATTGGTTTAACAGACAAAAGAAATCCC
CCTGATTGGTGGAGGTTCGCAGATAAAAAAAAGTTCCCTAATTGGTGGAG
GTTCACAGACAAGAAATGGTCATTATTGGTTCACAGACGTTCCCCTGATT
GGTTCAAAAACAAAAGAAACGCCGATGATTGGTTCAAAAACAAGAGAAAC
GCTTATGATTGGTTCACAACCACAAGGGAGGTGTAATTTCTTCATCGATA
GAAGGGATGTCCCTGATTGGTGGAGGTTCTCCCTGACCCCATCCTTTGTG
TTTCTGCGCAGGATGACGCGGGAGAACTAAACCACGCGCCTAGAAACTTG
TTGCAAAGTACGTACGATGTATATAACTGTACTGCAAGGGAAAAGGTTCG
GTTTTTCGAATGAAACAGGCGATCGAGAGCCAATGTCTTGTGTGTTTGTA
TGTGATCACGCAATCCAGCCCTGTCATGCTAGCAATTATAGAGTTGTTAG
TGTGTGTTTGTTGATATACCGTGCGTTTGGATTAACGTTGGATAAGCGAA
GGGCCAAACAAGCAGAGTCTTCACGCACCCATGATGTGGTATGATGACAT
GAACGGCATACATGGCGCACGACAGGCTCTTCGAGCGGCGACAGAGCGTG
GGGTGGATCGCGCCAAGGGCATGGCTGAGGGAGAACGAGTGCCCTTCTTC
GCTTGTGGCTTGTCTTCCGTGATGCACCCCAAG
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Coding sequence (CDS) from alignment at H-elongata_contig165664:1..933+

>mRNA_H-elongata_contig165664.4136.1 ID=mRNA_H-elongata_contig165664.4136.1|Name=mRNA_H-elongata_contig165664.4136.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=360bp|location=Sequence derived from alignment at H-elongata_contig165664:1..933+ (Himanthalia elongata Himel1 dioecious)
ATGTCGGGAGGCAAGGTGTTTGAGAAGGCGGGGGTCAACCTGTCCGTCGT
TTACGGCACCATGCCGCAGGAGATGTCGGGAGGCAAGGTGTTTGAGAAGG
CGGGGGTCAACCTGTCCGTCGTTTACGGCACCATGCCGCAGGAGGCTCTT
CGAGCGGCGACAGAGCGTGGGGTGGATCGCGCCAAGGGCATGGCTGAGGG
AGAACGAGTGCCCTTCTTCGCTTGTGGCTTGTCTTCCGTGATGCACCCCA
AGGCTCTTCGAGCGGCGACAGAGCGTGGGGTGGATCGCGCCAAGGGCATG
GCTGAGGGAGAACGAGTGCCCTTCTTCGCTTGTGGCTTGTCTTCCGTGAT
GCACCCCAAG
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