prot_H-elongata_contig16562.4134.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig16562.4134.1
Unique Nameprot_H-elongata_contig16562.4134.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length365
Homology
BLAST of mRNA_H-elongata_contig16562.4134.1 vs. uniprot
Match: D8LKG5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKG5_ECTSI)

HSP 1 Score: 237 bits (604), Expect = 4.040e-66
Identity = 149/353 (42.21%), Postives = 202/353 (57.22%), Query Frame = 0
Query:    1 VSKLERVRAWNERHRACFLPVAWAACATLAAKWPREGPNGA---LPSEVKLQKLRRAWGPDGRNQDRLSSGAGAGRPSPFSLLALLAAFLDRESASRGVSKDTFGVGENPTFGKQNPNLAEVFLGFCAFVRRLG--SGHMTTA----TLEVLKNGE------ARAAIDEKHQAL-PSSPFAGKSLEANQSQKGTGPISLV---VEGELREDLRDARLASRLRRACRDVELSLTPNRVFGLPVWSQDIRWSLLGYALEPARVGTQELAPAAV--------CYLEWMEVKLKMCMSEEIDALPGLFGYYVTGRRTPTLASAAQRDAHDERESVEAAEIADVERCRSADAAFEVAM 326
            V+K++R + W++RH ACFLPVAWA CA +AAKWP +G  G    +  E    + RR      R  +R  +   A +PSPFS+LALLAAFLD++S +RGVSK TFG G +PT  K NPN+ E+FL FC++VR+LG   G   +A    T+ +L +GE      A AA+    +   P     G   E  +   G     L+   V G++ EDL DA L S LRRAC  +E SLTP+   GLPVW QDIRWSLLG+ALE ++    E +   V         YL+WME++L+MCM++ ID +PG++G+ VTGR      + A  D             ADV + R+AD  F  A+
Sbjct:  225 VTKVKRAKCWHDRHPACFLPVAWAVCAAVAAKWPTDGDLGGGAGVMWENGGARNRRGGVSAARVLERARARK-ARQPSPFSILALLAAFLDKDSKARGVSKATFGAGPSPTCAKHNPNIGEIFLRFCSYVRQLGVKPGRRKSAGPPATMNLLDSGELEMWWSAAAAVAATPKGKKPQRSDRGAETEPEEIAMGQDQADLIRVQVGGKVLEDLVDAALVSGLRRACAAIEQSLTPDGARGLPVWGQDIRWSLLGFALEQSQGENDEESEGRVGKKKEGQPSYLDWMEIRLQMCMNDGIDEMPGMYGFNVTGRAPLAPEAIANLDRQ---------HAADVLQARTADVVFSAAL 567          
BLAST of mRNA_H-elongata_contig16562.4134.1 vs. uniprot
Match: A0A6H5KUD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUD4_9PHAE)

HSP 1 Score: 179 bits (455), Expect = 2.750e-46
Identity = 138/371 (37.20%), Postives = 181/371 (48.79%), Query Frame = 0
Query:    1 VSKLERVRAWNERHRACFLPVAWAACATLAAKWPREGPNGALPSEVKLQKLRRAWGPDGRNQDRLSSGAG--AGRPSPFSLLALLAAFLDRESASRGVSKDTFGVGENPTFGKQNPNLAEVFLGFCAFVRRLGSGHMTTATLEVLKNGEARAAIDEKHQALPSSPFAGKSLEANQSQKGTGPISLVVEGELREDLRDARLASRLRRACRDVELSLTPNRVFGLPVWSQDIRWSLLGYALEPARVGTQELAPAAV--------CYLEWMEVKLKMCMSEEIDALPGLFGYYVTGRRTPTLASAAQRDAHDERESVEAAEIADVERCRSADAAFEVAMAAEAASGDKEGGGRVSGSSAGAGDSDVAMGGASSD 361
            V+K++R + W++RH ACFLPVAWA CA +AAKWP +G  G  P          A    G    RL+      A RPSPFS+LALLAAFLD+     G  K                       G  A +  L SG      LE+  +  A  A   K +    S    +  EA   +  TG +     G++ EDL DA LAS LRRAC  +E SLTP+   GLPVW QDIRWSLLG+A E +     E +   V         YL+WME++L+MCM+E ID +PG++G+ VTGR      + A  D             ADV + R+AD  F  A+     S  + G G  +G S     SD   GG++S+
Sbjct:   94 VTKVKRAKCWHDRHPACFLPVAWAVCAAVAAKWPSDGDLGGGPG---------ASCEHGAPGCRLARARARKARRPSPFSILALLAAFLDKLGVKPGRRKSA---------------------GPPATLNLLDSGE-----LEMWWSAAAAVAAAPKGKKPQRSD---REAEAETGELATGQVG----GKVLEDLVDAALASDLRRACAAIEQSLTPDGARGLPVWGQDIRWSLLGFAFEQSEGENDEESEGGVGEKREGRPSYLDWMEIRLQMCMNEGIDEMPGMYGFNVTGRAPLAPEAIANLDRQ---------HAADVLQARTADVVFSAALQVGGGSQGQHGSGGANGDS-----SDSLFGGSASE 408          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16562.4134.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LKG5_ECTSI4.040e-6642.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KUD4_9PHAE2.750e-4637.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 27..30
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 16..26
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..30
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..15
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 31..365

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16562contigH-elongata_contig16562:1207..6884 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16562.4134.1mRNA_H-elongata_contig16562.4134.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig16562 1207..6884 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig16562.4134.1 ID=prot_H-elongata_contig16562.4134.1|Name=mRNA_H-elongata_contig16562.4134.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=365bp
VSKLERVRAWNERHRACFLPVAWAACATLAAKWPREGPNGALPSEVKLQK
LRRAWGPDGRNQDRLSSGAGAGRPSPFSLLALLAAFLDRESASRGVSKDT
FGVGENPTFGKQNPNLAEVFLGFCAFVRRLGSGHMTTATLEVLKNGEARA
AIDEKHQALPSSPFAGKSLEANQSQKGTGPISLVVEGELREDLRDARLAS
RLRRACRDVELSLTPNRVFGLPVWSQDIRWSLLGYALEPARVGTQELAPA
AVCYLEWMEVKLKMCMSEEIDALPGLFGYYVTGRRTPTLASAAQRDAHDE
RESVEAAEIADVERCRSADAAFEVAMAAEAASGDKEGGGRVSGSSAGAGD
SDVAMGGASSDSLCG
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