mRNA_H-elongata_contig165595.4130.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig165595.4130.1 vs. uniprot
Match: A0A6H5JWM7_9PHAE (Methyltransf_11 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWM7_9PHAE) HSP 1 Score: 120 bits (300), Expect = 4.130e-30 Identity = 65/123 (52.85%), Postives = 79/123 (64.23%), Query Frame = 1
Query: 25 QILDAKELPFEASSFDLVVDKGTVDALMCDGTGTANARQARGFLLEAARVLAPGGWLVVVSHVNPATDEGASLLSEVLLPGM-----------QGSG---------------EAFSWSIDVHC 315
Q+LDA++LPFE SFDLVVDKG VDA++CD G NAR+ LEAARV+APGGWLVVVSHV+P+T EG LLSEVL+P + +G G E +SWS+DVHC
Sbjct: 174 QVLDARDLPFEDGSFDLVVDKGAVDAMLCDDAGQDNARK---ICLEAARVVAPGGWLVVVSHVHPSTPEGMVLLSEVLVPALRESSSSLSSAGEGGGREGKEGEYEEAYEYEEVYSWSVDVHC 293
BLAST of mRNA_H-elongata_contig165595.4130.1 vs. uniprot
Match: D7G665_ECTSI (Methyltransf_11 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G665_ECTSI) HSP 1 Score: 115 bits (289), Expect = 1.900e-29 Identity = 59/122 (48.36%), Postives = 76/122 (62.30%), Query Frame = 1
Query: 25 QILDAKELPFEASSFDLVVDKGTVDALMCDGTGTANARQARGFLLEAARVLAPGGWLVVVSHVNPATDEGASLLSEVLLPGMQGSGEA-------------------------FSWSIDVHC 315
Q+LDA++LPFE SFDLVVDKG VDA++CD G NAR+ LEAARV+APGGW VVVSH++P+T EG +LL E L+P ++ S + +SWS+DVHC
Sbjct: 55 QVLDARDLPFEDGSFDLVVDKGAVDAMLCDDAGQENARE---ICLEAARVVAPGGWFVVVSHIHPSTPEGMALLEEALVPALRESSSSLSAGEGGEREDREGEYEEVYEXXXVYSWSVDVHC 173
BLAST of mRNA_H-elongata_contig165595.4130.1 vs. uniprot
Match: D8LLU3_ECTSI (Methyltransf_11 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLU3_ECTSI) HSP 1 Score: 114 bits (286), Expect = 1.160e-28 Identity = 59/122 (48.36%), Postives = 75/122 (61.48%), Query Frame = 1
Query: 25 QILDAKELPFEASSFDLVVDKGTVDALMCDGTGTANARQARGFLLEAARVLAPGGWLVVVSHVNPATDEGASLLSEVLLPGMQGSGEAFS-------------------------WSIDVHC 315
Q+LDA++LPFE SFDLVVDKG VDA++CD G NAR+ LEAARV+APGGW VVVSH++P+T EG +LL E L+P ++ S + S WS+DVHC
Sbjct: 92 QVLDARDLPFEDGSFDLVVDKGAVDAMLCDDAGQENARE---ICLEAARVVAPGGWFVVVSHIHPSTPEGMALLEEALVPALRESSSSLSAGEGGEREDREGEYEEVYEXXXXXSWSVDVHC 210
BLAST of mRNA_H-elongata_contig165595.4130.1 vs. uniprot
Match: A0A1E7FRC1_9STRA (Methyltransf_11 domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FRC1_9STRA) HSP 1 Score: 82.0 bits (201), Expect = 5.720e-16 Identity = 36/98 (36.73%), Postives = 67/98 (68.37%), Query Frame = 1
Query: 25 QILDAKELPFEASSFDLVVDKGTVDALMCD--GTGTANARQARGFLLEAARVLAPGGWLVVVSHVNPATDEGASLLSEVLLPGMQGSGEAFSWSIDVH 312
+++DA++LP+ SF+++++KGT+DA++ D G G N R + E ARVLA GG+++++SH+N D G L++V++PG++ G+ + ++VH
Sbjct: 216 EVVDARQLPYGDESFEMILEKGTLDAMLSDEDGNGPKNCRM---IVSECARVLAIGGYIIIISHLNARVDSGIQWLNDVVVPGLREGGKNCDFQVEVH 310
BLAST of mRNA_H-elongata_contig165595.4130.1 vs. uniprot
Match: A0A7S4ER94_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4ER94_9STRA) HSP 1 Score: 80.1 bits (196), Expect = 4.120e-15 Identity = 33/96 (34.38%), Postives = 65/96 (67.71%), Query Frame = 1
Query: 25 QILDAKELPFEASSFDLVVDKGTVDALMCDGTGTANARQARGFLLEAARVLAPGGWLVVVSHVNPATDEGASLLSEVLLPGMQGSGEAFSWSIDVH 312
++ DA++L +E SF+++++KGT+DA++ D G R + E ARVL GG+++++SH+N + G L++V++PG++ +G+ + W ++VH
Sbjct: 309 EVADARQLSYENESFEMILEKGTLDAMLSDSDG-GGQENCRKIVSECARVLKVGGYIIIISHLNARVESGLQWLNDVIVPGVRAAGK-YQWLVEVH 402
BLAST of mRNA_H-elongata_contig165595.4130.1 vs. uniprot
Match: A0A448ZBT7_9STRA (Methyltransf_11 domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZBT7_9STRA) HSP 1 Score: 77.0 bits (188), Expect = 4.810e-14 Identity = 32/96 (33.33%), Postives = 62/96 (64.58%), Query Frame = 1
Query: 25 QILDAKELPFEASSFDLVVDKGTVDALMCDGTGTANARQARGFLLEAARVLAPGGWLVVVSHVNPATDEGASLLSEVLLPGMQGSGEAFSWSIDVH 312
++ DA++L + SF+++++KGT+DA++ D G R + E ARVL G+++++SH+N + G L+ V++PG++ +G+ F W ++VH
Sbjct: 279 EVADARQLSYPDGSFEMILEKGTLDAMLSDSEG-GGQENCRXIVAECARVLKVSGYIIIISHLNARVESGLQWLNNVIVPGLRAAGD-FHWLVEVH 372
BLAST of mRNA_H-elongata_contig165595.4130.1 vs. uniprot
Match: A0A1Z5KEM9_FISSO (Methyltransf_11 domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KEM9_FISSO) HSP 1 Score: 73.2 bits (178), Expect = 1.050e-12 Identity = 42/107 (39.25%), Postives = 68/107 (63.55%), Query Frame = 1
Query: 25 QILDAKELPFEASSFDLVVDKGTVDALMCDG-TGTANARQARGFLLEAARVLAPGGWLVVVSHVNPATDEGASLLSEVLLPGMQGSGEAFSWSIDVHCRGEDDAEEG 342
Q +DA+++P+ SF LV++KGT+DA++ D G+AN ++ + E+ARVL GG +V+VSH+N G + +V+ G++ S E SW+I+VH DA+ G
Sbjct: 278 QKVDARDMPYSDESFHLVLEKGTLDAMLSDREAGSANCQK---IIRESARVLKTGGIIVLVSHLNAFDTSGIDWMEDVVFGGLR-SLETSSWAIEVHGNDGGDAQPG 380
BLAST of mRNA_H-elongata_contig165595.4130.1 vs. uniprot
Match: B7FYD0_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FYD0_PHATC) HSP 1 Score: 73.2 bits (178), Expect = 1.100e-12 Identity = 37/102 (36.27%), Postives = 62/102 (60.78%), Query Frame = 1
Query: 34 DAKELPFEASSFDLVVDKGTVDALMCDGTGTANARQARGFLLEAARVLAPGGWLVVVSHVNPATDEGASLLSEVLLPGMQGSGEAFSWSIDVHCRGEDDAEE 339
DA+ LP+E +F+LV++KGT+DA++ D R + E+ RVL GG++V++SH+N T +G L +V+ G++ + +W I+VH E AE+
Sbjct: 285 DARNLPYEDGTFELVLEKGTLDAMLSDKD--EGVRNCISIVKESGRVLKVGGYIVLISHLNAHTSKGLGWLQDVVFEGLKRADTEATWEIEVHGNDEAVAED 384
BLAST of mRNA_H-elongata_contig165595.4130.1 vs. uniprot
Match: A0A1Z5KDZ3_FISSO (Methyltransf_11 domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KDZ3_FISSO) HSP 1 Score: 72.0 bits (175), Expect = 2.680e-12 Identity = 42/105 (40.00%), Postives = 65/105 (61.90%), Query Frame = 1
Query: 31 LDAKELPFEASSFDLVVDKGTVDALMCDG-TGTANARQARGFLLEAARVLAPGGWLVVVSHVNPATDEGASLLSEVLLPGMQGSGEAFSWSIDVHCRGEDDAEEG 342
+DA+ PF SF LV++KGT+DA++ D G+AN ++ + E+ARVL GG +V+VSH+N G + +V+ G++ S E SW+I+VH DA+ G
Sbjct: 275 VDARNTPFSDESFHLVLEKGTLDAMLSDREAGSANCQK---IIRESARVLKTGGIIVLVSHLNAFDTSGIDWMEDVVFGGLR-SFETSSWAIEVHGNDGGDAQPG 375
BLAST of mRNA_H-elongata_contig165595.4130.1 vs. uniprot
Match: A0A7R9WWQ1_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WWQ1_9STRA) HSP 1 Score: 68.6 bits (166), Expect = 5.160e-12 Identity = 35/98 (35.71%), Postives = 59/98 (60.20%), Query Frame = 1
Query: 64 SFDLVVDKGTVDALMCDGTGTANARQARGFLLEAARVLAPGGWLVVVSHVNPATDEGASLLSEVLLPGMQ------GSGEAFSWSIDVHCRGEDDAEE 339
+FDL+++KGT+DA++ + + A + R + E +R+L PGG ++VVSH+N +G L V+LPG++ + S+ I+VH G D+A E
Sbjct: 33 TFDLILEKGTLDAMLSNDSEDAGVQNCREIMAECSRLLKPGGVMLVVSHLNAHVQKGLDWLERVVLPGLRRKIGKNATESTGSFEIEVHGNGPDEASE 130 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig165595.4130.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig165595.4130.1 >prot_H-elongata_contig165595.4130.1 ID=prot_H-elongata_contig165595.4130.1|Name=mRNA_H-elongata_contig165595.4130.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=122bp MHRLRRASQILDAKELPFEASSFDLVVDKGTVDALMCDGTGTANARQARGback to top mRNA from alignment at H-elongata_contig165595:96..898- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig165595.4130.1 ID=mRNA_H-elongata_contig165595.4130.1|Name=mRNA_H-elongata_contig165595.4130.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=803bp|location=Sequence derived from alignment at H-elongata_contig165595:96..898- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig165595:96..898- >mRNA_H-elongata_contig165595.4130.1 ID=mRNA_H-elongata_contig165595.4130.1|Name=mRNA_H-elongata_contig165595.4130.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=732bp|location=Sequence derived from alignment at H-elongata_contig165595:96..898- (Himanthalia elongata Himel1 dioecious)back to top |