mRNA_H-elongata_contig16558.4129.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig16558.4129.1
Unique NamemRNA_H-elongata_contig16558.4129.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig16558.4129.1 vs. uniprot
Match: D7G928_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G928_ECTSI)

HSP 1 Score: 223 bits (568), Expect = 2.870e-66
Identity = 158/341 (46.33%), Postives = 191/341 (56.01%), Query Frame = 1 
Query:   22 REAGSLPEVAERAEYILLRDSKFKFHAPAWSGENHDKRQDILLREGLNNPKKSSLLGIGTADLASAGVEDSFSKAIYDPVKACAVEGLIETSLPGRYTPRKI--AARPTPTDGSNAP--LTSQTYSGW-PFPSTAALGTVFRVFPNGLKGQCNTFPHRTGANVPGIAPLKRLSGSKSAPTLRQQPTAPDV---SPSSTSQSLHNRSSGGSGSEKALGPREPGNLSRSASVDKIQVFPDATVGRSYNGEGYRHSHGHSRRGTQKSSRLRSGVEAIATSESARVRSPAKLNFLTTASSNDHLPTGKSPV--------LPRTTTPAQRRDSNQLALDFAAVRSL 996
            RE GSL EVAERAEY+LLRDS++KFHAPAWSG+NHD+RQD+L REGLN PKKS+LLG+GTADLASAG  D FSK+IYDP K CAVEGL+ET  PGRYTPRK+  A R       + P     Q  SG     S  AL TVFRV PNGL G  +T   R GA V GIAP KRL GS+S PT+R      +V   +P   S  + + S GG GS +  G    G   R A     +    AT G +  G         SR  T+             T   AR  +     F+   +S +   T +SP         L R  +PA+RR ++QL LD A +RSL
Sbjct:   84 RETGSLSEVAERAEYLLLRDSEYKFHAPAWSGKNHDERQDLLQREGLNKPKKSTLLGVGTADLASAGANDMFSKSIYDPAKTCAVEGLVETCFPGRYTPRKVTSARRAAAASRDDTPPLRQGQEKSGQRSCSSPGALDTVFRVVPNGL-GNHSTVGGRGGATVAGIAPCKRLCGSRSTPTIRSPENKAEVGTGTPLRKSSPMRSPSPGG-GSRRHTGSGGEGG--RGAGSVFAERLLSATSGSARRG---------SRGLTRXXXXXXXXXXXXXTQGVARATTAGTEGFVKKTASPEDC-TRRSPGEGGPGSARLSRGQSPAERRSNDQLTLDLATIRSL 410
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BLAST of mRNA_H-elongata_contig16558.4129.1 vs. uniprot
Match: A0A7S4DG49_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DG49_HETAK)

HSP 1 Score: 84.0 bits (206), Expect = 7.370e-16
Identity = 48/109 (44.04%), Postives = 63/109 (57.80%), Query Frame = 1 
Query:   19 QREAGSLPEVAERAEYI--LLRDSKFKFHAPAWSGENHDKRQDILLREGLNNPKKSSLLGIGTADLASAGVEDSFSKAIYDPVKACAVEGLIETSLPGRYTPRKIAARP 339
            +R  G   +  ER  Y   LL  S  +FH    SGE HD+RQD+L+REGL  PK+SS+LG G  D+ S GVED  +K+ Y P +   VEG  E +  GR+TP +    P
Sbjct:   10 KRIVGDHRDHPERRRYQQGLLMHSHSRFHRQPPSGEQHDRRQDVLVREGLVAPKQSSVLGYGRRDVYSYGVEDQLAKSNYCPQEKIKVEGHFERNRGGRWTPGRTGMYP 118
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16558.4129.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G928_ECTSI2.870e-6646.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S4DG49_HETAK7.370e-1644.04Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16558contigH-elongata_contig16558:5892..7333 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score227.6
Seed ortholog evalue8.4e-57
Seed eggNOG ortholog2880.D7G928
EggNOG OGs2EXPF@1,2SZAY@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-15_002120.1
Exons2
Model size1005
Cds size1005
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929968.9819868-CDS-H-elongata_contig16558:5891..67831622929968.9819868-CDS-H-elongata_contig16558:5891..6783Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16558 5892..6783 -
1691679228.2911334-CDS-H-elongata_contig16558:5891..67831691679228.2911334-CDS-H-elongata_contig16558:5891..6783Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16558 5892..6783 -
1622929968.9952586-CDS-H-elongata_contig16558:7220..73331622929968.9952586-CDS-H-elongata_contig16558:7220..7333Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16558 7221..7333 -
1691679228.2994885-CDS-H-elongata_contig16558:7220..73331691679228.2994885-CDS-H-elongata_contig16558:7220..7333Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16558 7221..7333 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16558.4129.1prot_H-elongata_contig16558.4129.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig16558 5892..7333 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig16558.4129.1

>prot_H-elongata_contig16558.4129.1 ID=prot_H-elongata_contig16558.4129.1|Name=mRNA_H-elongata_contig16558.4129.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=335bp
MPRFVSQREAGSLPEVAERAEYILLRDSKFKFHAPAWSGENHDKRQDILL
REGLNNPKKSSLLGIGTADLASAGVEDSFSKAIYDPVKACAVEGLIETSL
PGRYTPRKIAARPTPTDGSNAPLTSQTYSGWPFPSTAALGTVFRVFPNGL
KGQCNTFPHRTGANVPGIAPLKRLSGSKSAPTLRQQPTAPDVSPSSTSQS
LHNRSSGGSGSEKALGPREPGNLSRSASVDKIQVFPDATVGRSYNGEGYR
HSHGHSRRGTQKSSRLRSGVEAIATSESARVRSPAKLNFLTTASSNDHLP
TGKSPVLPRTTTPAQRRDSNQLALDFAAVRSLNL*
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mRNA from alignment at H-elongata_contig16558:5892..7333-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig16558.4129.1 ID=mRNA_H-elongata_contig16558.4129.1|Name=mRNA_H-elongata_contig16558.4129.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1442bp|location=Sequence derived from alignment at H-elongata_contig16558:5892..7333- (Himanthalia elongata Himel1 dioecious)
ATGCCCCGTTTCGTCTCTCAGCGAGAGGCTGGATCGTTACCAGAGGTAGC
GGAACGTGCGGAATACATCCTCCTTCGTGATTCCAAGTTCAAATTTCATG
CTCCGGCGTGGAGGTAAGACAAGCCACCGTTATCTCGCTCGTGAACCGTG
ACACGTGATAAGTAAATATCTGCGTGAAAGCGCAAGCAATGGGGTGTAGA
CAGCGTCAAGTGTTTAAAGTTACCGAGGCAGTGCCTTAATGGGTAGTGAT
ACGAAAAGCTTTAGCGGTGTGTCATATCACGCAAAGGCGCTATCCGTCAC
CGAGCTGTTCTGATGGGAAGAGATGGTGGCACAGAAGGTAAAATAATATA
CCAACAGTAGATTTCATTTGCGAGATCGACGACGAAGATAGTAACCCTCG
CGCAGTTTTCCTCTCTAATTTGCAATCATCAGCTCCCGCTGCGAATAATA
CAATGAATCCTCGTTCAACGGAGGTGATCTAGTCACTAATTAACCAAACA
AATACAATGCCCGATCTTTTTATTATTATTTTGTGTCTCCTCTCACGAAG
TGGTGAAAACCATGATAAGCGTCAGGACATTTTGCTGCGCGAGGGTCTCA
ACAACCCCAAGAAGTCGTCTCTCCTTGGCATAGGAACCGCTGATCTAGCG
TCCGCCGGCGTGGAGGACTCGTTTTCGAAGGCTATTTATGATCCCGTGAA
GGCATGTGCTGTGGAAGGCCTCATCGAAACCTCCCTCCCGGGCCGCTACA
CCCCACGAAAGATAGCGGCACGACCTACTCCGACCGATGGTAGTAACGCT
CCGCTGACCTCCCAAACATACAGTGGGTGGCCTTTTCCGTCGACCGCTGC
GCTGGGTACAGTATTCCGCGTTTTTCCAAATGGTTTGAAGGGTCAGTGTA
ATACATTTCCGCACAGAACAGGCGCGAATGTTCCAGGAATCGCACCCCTC
AAACGGCTGAGTGGGTCGAAAAGCGCACCAACCCTCCGCCAGCAGCCGAC
AGCGCCCGACGTTTCTCCATCGTCGACCTCCCAGTCGCTTCACAATCGCA
GCAGTGGTGGCAGCGGCAGTGAAAAGGCGCTAGGTCCAAGAGAACCGGGC
AATCTGTCTAGGTCGGCGTCAGTAGACAAAATCCAAGTCTTCCCAGACGC
CACAGTGGGAAGGAGTTATAACGGTGAAGGTTATCGTCATTCTCATGGGC
ACAGTCGAAGAGGTACCCAGAAGTCGAGTCGTTTGCGGTCAGGAGTTGAG
GCGATCGCAACAAGTGAGAGTGCACGGGTCAGGAGCCCGGCGAAGTTGAA
CTTCCTTACAACAGCGTCATCGAATGACCACTTGCCAACGGGAAAGTCCC
CCGTGCTGCCTAGAACGACCACCCCAGCGCAGCGAAGGGACTCGAACCAG
CTGGCATTGGATTTCGCTGCGGTGCGATCGCTAAATTTGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig16558:5892..7333-

>mRNA_H-elongata_contig16558.4129.1 ID=mRNA_H-elongata_contig16558.4129.1|Name=mRNA_H-elongata_contig16558.4129.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2010bp|location=Sequence derived from alignment at H-elongata_contig16558:5892..7333- (Himanthalia elongata Himel1 dioecious)
ATGCCCCGTTTCGTCTCTCAGCGAGAGGCTGGATCGTTACCAGAGGTAGC
GGAACGTGCGGAATACATCCTCCTTCGTGATTCCAAGTTCAAATTTCATG
CTCCGGCGTGGAGATGCCCCGTTTCGTCTCTCAGCGAGAGGCTGGATCGT
TACCAGAGGTAGCGGAACGTGCGGAATACATCCTCCTTCGTGATTCCAAG
TTCAAATTTCATGCTCCGGCGTGGAGTGGTGAAAACCATGATAAGCGTCA
GGACATTTTGCTGCGCGAGGGTCTCAACAACCCCAAGAAGTCGTCTCTCC
TTGGCATAGGAACCGCTGATCTAGCGTCCGCCGGCGTGGAGGACTCGTTT
TCGAAGGCTATTTATGATCCCGTGAAGGCATGTGCTGTGGAAGGCCTCAT
CGAAACCTCCCTCCCGGGCCGCTACACCCCACGAAAGATAGCGGCACGAC
CTACTCCGACCGATGGTAGTAACGCTCCGCTGACCTCCCAAACATACAGT
GGGTGGCCTTTTCCGTCGACCGCTGCGCTGGGTACAGTATTCCGCGTTTT
TCCAAATGGTTTGAAGGGTCAGTGTAATACATTTCCGCACAGAACAGGCG
CGAATGTTCCAGGAATCGCACCCCTCAAACGGCTGAGTGGGTCGAAAAGC
GCACCAACCCTCCGCCAGCAGCCGACAGCGCCCGACGTTTCTCCATCGTC
GACCTCCCAGTCGCTTCACAATCGCAGCAGTGGTGGCAGCGGCAGTGAAA
AGGCGCTAGGTCCAAGAGAACCGGGCAATCTGTCTAGGTCGGCGTCAGTA
GACAAAATCCAAGTCTTCCCAGACGCCACAGTGGGAAGGAGTTATAACGG
TGAAGGTTATCGTCATTCTCATGGGCACAGTCGAAGAGGTACCCAGAAGT
CGAGTCGTTTGCGGTCAGGAGTTGAGGCGATCGCAACAAGTGAGAGTGCA
CGGGTCAGGAGCCCGGCGAAGTTGAACTTCCTTACAACAGCGTCATCGAA
TGACCACTTGCCAACGGGAAAGTCCCCCGTGCTGCCTAGAACGACCACCC
CAGCGCAGCGAAGGGACTCGAACCAGCTGGCATTGGATTTCGCTGCGGTG
CGATCGCTAAATTTGTAGTGGTGAAAACCATGATAAGCGTCAGGACATTT
TGCTGCGCGAGGGTCTCAACAACCCCAAGAAGTCGTCTCTCCTTGGCATA
GGAACCGCTGATCTAGCGTCCGCCGGCGTGGAGGACTCGTTTTCGAAGGC
TATTTATGATCCCGTGAAGGCATGTGCTGTGGAAGGCCTCATCGAAACCT
CCCTCCCGGGCCGCTACACCCCACGAAAGATAGCGGCACGACCTACTCCG
ACCGATGGTAGTAACGCTCCGCTGACCTCCCAAACATACAGTGGGTGGCC
TTTTCCGTCGACCGCTGCGCTGGGTACAGTATTCCGCGTTTTTCCAAATG
GTTTGAAGGGTCAGTGTAATACATTTCCGCACAGAACAGGCGCGAATGTT
CCAGGAATCGCACCCCTCAAACGGCTGAGTGGGTCGAAAAGCGCACCAAC
CCTCCGCCAGCAGCCGACAGCGCCCGACGTTTCTCCATCGTCGACCTCCC
AGTCGCTTCACAATCGCAGCAGTGGTGGCAGCGGCAGTGAAAAGGCGCTA
GGTCCAAGAGAACCGGGCAATCTGTCTAGGTCGGCGTCAGTAGACAAAAT
CCAAGTCTTCCCAGACGCCACAGTGGGAAGGAGTTATAACGGTGAAGGTT
ATCGTCATTCTCATGGGCACAGTCGAAGAGGTACCCAGAAGTCGAGTCGT
TTGCGGTCAGGAGTTGAGGCGATCGCAACAAGTGAGAGTGCACGGGTCAG
GAGCCCGGCGAAGTTGAACTTCCTTACAACAGCGTCATCGAATGACCACT
TGCCAACGGGAAAGTCCCCCGTGCTGCCTAGAACGACCACCCCAGCGCAG
CGAAGGGACTCGAACCAGCTGGCATTGGATTTCGCTGCGGTGCGATCGCT
AAATTTGTAG
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