mRNA_H-elongata_contig165533.4127.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig165533.4127.1
Unique NamemRNA_H-elongata_contig165533.4127.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig165533.4127.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig165533contigH-elongata_contig165533:2..784 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size318
Cds size261
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig165533.4127.1prot_H-elongata_contig165533.4127.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig165533 26..751 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929968.783271-UTR-H-elongata_contig165533:1..251622929968.783271-UTR-H-elongata_contig165533:1..25Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig165533 2..25 -
1691679228.236042-UTR-H-elongata_contig165533:1..251691679228.236042-UTR-H-elongata_contig165533:1..25Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig165533 2..25 -
1622929968.8590543-UTR-H-elongata_contig165533:751..7841622929968.8590543-UTR-H-elongata_contig165533:751..784Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig165533 752..784 -
1691679228.2734985-UTR-H-elongata_contig165533:751..7841691679228.2734985-UTR-H-elongata_contig165533:751..784Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig165533 752..784 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929968.822723-CDS-H-elongata_contig165533:25..541622929968.822723-CDS-H-elongata_contig165533:25..54Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig165533 26..54 -
1691679228.2486622-CDS-H-elongata_contig165533:25..541691679228.2486622-CDS-H-elongata_contig165533:25..54Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig165533 26..54 -
1622929968.8412857-CDS-H-elongata_contig165533:519..7511622929968.8412857-CDS-H-elongata_contig165533:519..751Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig165533 520..751 -
1691679228.2591531-CDS-H-elongata_contig165533:519..7511691679228.2591531-CDS-H-elongata_contig165533:519..751Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig165533 520..751 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig165533.4127.1

>prot_H-elongata_contig165533.4127.1 ID=prot_H-elongata_contig165533.4127.1|Name=mRNA_H-elongata_contig165533.4127.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=87bp
MEEAYRRMDSRCVGGFSRRVPECLVLWRRSLVHAFSRPSRDDKSHSQATP
DVCEAPEGGRPPTVAFHDLPGNVRDKQRGFGWETWT*
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mRNA from alignment at H-elongata_contig165533:2..784-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig165533.4127.1 ID=mRNA_H-elongata_contig165533.4127.1|Name=mRNA_H-elongata_contig165533.4127.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=783bp|location=Sequence derived from alignment at H-elongata_contig165533:2..784- (Himanthalia elongata Himel1 dioecious)
CCGCAATGGTCGGGCGCGGATTCCAGCGTTTTCATGGAGGAGGCTTACCG
TCGGATGGACAGCAGGTGTGTAGGGGGGTTTTCTCGACGTGTCCCCGAGT
GCCTGGTCTTGTGGCGTCGTTCTTTAGTTCACGCTTTCTCGAGGCCGTCT
AGAGATGACAAAAGCCACAGCCAAGCTACACCGGACGTGTGCGAAGCTCC
TGAGGGTGGAAGGCCTCCCACGGTGGCGTTTCATGATCTCCCGGGGAACG
TCAGGGACAAACAAAGTCTGTCGGGTCGCGGCGCGGCGCGTAGCTTCAGG
AGGGCGGAGAGGTTTTGTTTGTTTGTATGTGATGGCGGCAAGGTCGGTGG
GTTTTGGTATTATTATTAGAAATTTTAAAAAAAACCTGGAAAGAAAAAAA
AAAAAAAAAAAAAAAAAAAGGGAGTCCGGGTGCACACACTAGCTTTGTTG
CGTGTCACGTCGAGGCGGAATCAGTCTGCAGGTGTTCCCGATCGATCTGC
CAAAAAAAGCAGACAAGATCTTAGCCGAGCCTAGCGAAGCCCAACGCGCG
AACTTCCAACCATGCTTTAGCCTATATAGTCAAGAGCTATCAGAGTGTCT
CTTGAAGCCTTCGTACACGTGTACACACACTCCCCCAGTATCGTCCTTGC
TTATCCGCCTTTGTTTTTTCAAGACATTGCCAATAGTTGCGTGTTTCCGC
GTTGTCCCTTCAACTCTCCCGCGATGCCAGGGGGTTTCGGGTGGGAAACG
TGGACGTGACTCTCATTCTCCAGAAGCCCAAGG
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Coding sequence (CDS) from alignment at H-elongata_contig165533:2..784-

>mRNA_H-elongata_contig165533.4127.1 ID=mRNA_H-elongata_contig165533.4127.1|Name=mRNA_H-elongata_contig165533.4127.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=522bp|location=Sequence derived from alignment at H-elongata_contig165533:2..784- (Himanthalia elongata Himel1 dioecious)
ATGGAGGAGGCTTACCGTCGGATGGACAGCAGGTGTGTAGGGGGGTTTTC
TCGACGTGTCCCCGAGTGCCTGGTCTTGTGGCGTCGTTCTTTAGTTCACG
CTTTCTCGAGGCCGTCTAGAGATGACAAAAGCCACAGCCAAGCTACACCG
GACGTGTGCGAAGCTCCTGAGGGTGGAAGGCCTCCCACGGTGGCGTTTCA
TGATCTCCCGGGGAACGTCAGGGACAAACAAAATGGAGGAGGCTTACCGT
CGGATGGACAGCAGGTGTGTAGGGGGGTTTTCTCGACGTGTCCCCGAGTG
CCTGGTCTTGTGGCGTCGTTCTTTAGTTCACGCTTTCTCGAGGCCGTCTA
GAGATGACAAAAGCCACAGCCAAGCTACACCGGACGTGTGCGAAGCTCCT
GAGGGTGGAAGGCCTCCCACGGTGGCGTTTCATGATCTCCCGGGGAACGT
CAGGGACAAACAAAGGGGTTTCGGGTGGGAAACGTGGACGTGAGGGGTTT
CGGGTGGGAAACGTGGACGTGA
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