mRNA_H-elongata_contig16550.4125.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig16550.4125.1
Unique NamemRNA_H-elongata_contig16550.4125.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig16550.4125.1 vs. uniprot
Match: A0A6H5KSL7_9PHAE (NifU domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KSL7_9PHAE)

HSP 1 Score: 173 bits (438), Expect = 3.530e-52
Identity = 87/92 (94.57%), Postives = 91/92 (98.91%), Query Frame = 1 
Query:    1 SNSGNVRVVEIDGPVVRLELEGACGSCPSSTMTMKMGLERRLVQRIPEISEVVQSIPNGPELSVENVEKVLDGVRPFLSVAGGSISIQSLTG 276
            S+ GNVRVVEIDGPVVRLELEGACGSCPSSTMTMKMGLERRL+QRIPEISEVVQSIPNGPEL+VENVEKVLDGVRPFLSVAGGSI+IQSLTG
Sbjct:  140 SDGGNVRVVEIDGPVVRLELEGACGSCPSSTMTMKMGLERRLMQRIPEISEVVQSIPNGPELTVENVEKVLDGVRPFLSVAGGSINIQSLTG 231
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BLAST of mRNA_H-elongata_contig16550.4125.1 vs. uniprot
Match: A0A835Z016_9STRA (NifU-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z016_9STRA)

HSP 1 Score: 155 bits (393), Expect = 1.850e-46
Identity = 74/92 (80.43%), Postives = 87/92 (94.57%), Query Frame = 1 
Query:    1 SNSGNVRVVEIDGPVVRLELEGACGSCPSSTMTMKMGLERRLVQRIPEISEVVQSIPNGPELSVENVEKVLDGVRPFLSVAGGSISIQSLTG 276
            S+ GNVRVVEIDGPVVRLEL+GACGSCPSSTMTMKMGLERRL+++IPEISEVVQS+P GP+L++E +EKVLDGVRPFLSVAGG+IS+ +L G
Sbjct:   45 SDGGNVRVVEIDGPVVRLELQGACGSCPSSTMTMKMGLERRLIEKIPEISEVVQSMPEGPQLNMEEIEKVLDGVRPFLSVAGGAISVAALEG 136
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BLAST of mRNA_H-elongata_contig16550.4125.1 vs. uniprot
Match: A0A7R9U202_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U202_9STRA)

HSP 1 Score: 144 bits (364), Expect = 2.190e-41
Identity = 69/92 (75.00%), Postives = 81/92 (88.04%), Query Frame = 1 
Query:    1 SNSGNVRVVEIDGPVVRLELEGACGSCPSSTMTMKMGLERRLVQRIPEISEVVQSIPNGPELSVENVEKVLDGVRPFLSVAGGSISIQSLTG 276
            S+ GNV V EIDGP+VRLEL+GACG+CPSSTMTMKMGLERRL +RIPEISEVVQ++P+ PELS   VE VLDGVRPFL VAGGSI++Q ++G
Sbjct:  109 SDGGNVAVAEIDGPIVRLELQGACGTCPSSTMTMKMGLERRLKERIPEISEVVQAVPDAPELSEAGVESVLDGVRPFLQVAGGSITLQEISG 200
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BLAST of mRNA_H-elongata_contig16550.4125.1 vs. uniprot
Match: A0A4D9D2Y8_9STRA (NifU domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D2Y8_9STRA)

HSP 1 Score: 143 bits (360), Expect = 1.060e-40
Identity = 67/92 (72.83%), Postives = 83/92 (90.22%), Query Frame = 1 
Query:    1 SNSGNVRVVEIDGPVVRLELEGACGSCPSSTMTMKMGLERRLVQRIPEISEVVQSIPNGPELSVENVEKVLDGVRPFLSVAGGSISIQSLTG 276
            S+ GNV V EIDGPVV+LEL+GACGSCPSSTMTMKMGLERRL ++IPEISEV+Q++P GP LS EN+++VL+GVRPFL VAGGSIS++ ++G
Sbjct:  112 SDGGNVVVSEIDGPVVKLELQGACGSCPSSTMTMKMGLERRLKEKIPEISEVIQAMPEGPALSTENIDQVLEGVRPFLMVAGGSISVKEISG 203
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BLAST of mRNA_H-elongata_contig16550.4125.1 vs. uniprot
Match: W7TNI1_9STRA (Nifu like protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TNI1_9STRA)

HSP 1 Score: 142 bits (357), Expect = 2.780e-40
Identity = 66/92 (71.74%), Postives = 83/92 (90.22%), Query Frame = 1 
Query:    1 SNSGNVRVVEIDGPVVRLELEGACGSCPSSTMTMKMGLERRLVQRIPEISEVVQSIPNGPELSVENVEKVLDGVRPFLSVAGGSISIQSLTG 276
            S+ GNV V +IDGPVV+LEL+GACGSCPSSTMTMKMGLERRL ++IPEISEV+Q++P GP LS EN+++VL+GVRPFL VAGGSIS++ ++G
Sbjct:  109 SDGGNVVVSDIDGPVVKLELQGACGSCPSSTMTMKMGLERRLKEKIPEISEVIQAMPEGPALSTENIDQVLEGVRPFLMVAGGSISVKEISG 200
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BLAST of mRNA_H-elongata_contig16550.4125.1 vs. uniprot
Match: A0A7S1H4I0_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1H4I0_9STRA)

HSP 1 Score: 137 bits (346), Expect = 2.050e-39
Identity = 65/92 (70.65%), Postives = 78/92 (84.78%), Query Frame = 1 
Query:    1 SNSGNVRVVEIDGPVVRLELEGACGSCPSSTMTMKMGLERRLVQRIPEISEVVQSIPNGPELSVENVEKVLDGVRPFLSVAGGSISIQSLTG 276
            S+ GNV + EIDGPVVRLEL+GACG+CPSST TMKMGLER+L ++IPEI EVVQS+P GPEL  E +  VLDGVRPFL VAGGSI ++S++G
Sbjct:   47 SDGGNVAISEIDGPVVRLELQGACGTCPSSTQTMKMGLERKLREKIPEIQEVVQSMPEGPELCEEEINVVLDGVRPFLQVAGGSIDVESISG 138
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BLAST of mRNA_H-elongata_contig16550.4125.1 vs. uniprot
Match: A0A7S2C848_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C848_9STRA)

HSP 1 Score: 136 bits (343), Expect = 3.220e-38
Identity = 65/92 (70.65%), Postives = 80/92 (86.96%), Query Frame = 1 
Query:    1 SNSGNVRVVEIDGPVVRLELEGACGSCPSSTMTMKMGLERRLVQRIPEISEVVQSIPNGPELSVENVEKVLDGVRPFLSVAGGSISIQSLTG 276
            S+ GNV + EIDGPVV+LEL+GACGSCPSSTMTMKMGLERRL + IPEISEVVQ++P+ P L+ E+V+ +L+G+RPFL VAGG I I+SLTG
Sbjct:  109 SDGGNVVISEIDGPVVKLELQGACGSCPSSTMTMKMGLERRLKEAIPEISEVVQAMPDSPPLTEESVDGILEGIRPFLQVAGGKIEIESLTG 200
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BLAST of mRNA_H-elongata_contig16550.4125.1 vs. uniprot
Match: A0A8J2S7I7_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S7I7_9STRA)

HSP 1 Score: 135 bits (340), Expect = 4.570e-38
Identity = 66/92 (71.74%), Postives = 80/92 (86.96%), Query Frame = 1 
Query:    1 SNSGNVRVVEIDGPVVRLELEGACGSCPSSTMTMKMGLERRLVQRIPEISEVVQSIPNGPELSVENVEKVLDGVRPFLSVAGGSISIQSLTG 276
            S+ GNVRV  I+GPVVRL+LEGACG CPSSTMTMKMGLERRL + IPEISEVVQ +P+ P+++ E V++VLDGVRPFLSVAGGSI + S++G
Sbjct:   79 SDGGNVRVSGIEGPVVRLQLEGACGDCPSSTMTMKMGLERRLKEAIPEISEVVQVLPDAPDITEEAVDEVLDGVRPFLSVAGGSIDLVSVSG 170
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BLAST of mRNA_H-elongata_contig16550.4125.1 vs. uniprot
Match: A0A7S2K8U6_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K8U6_9STRA)

HSP 1 Score: 135 bits (341), Expect = 4.960e-38
Identity = 66/92 (71.74%), Postives = 77/92 (83.70%), Query Frame = 1 
Query:    1 SNSGNVRVVEIDGPVVRLELEGACGSCPSSTMTMKMGLERRLVQRIPEISEVVQSIPNGPELSVENVEKVLDGVRPFLSVAGGSISIQSLTG 276
            ++ GNV +VEIDGPVV+LEL+G CG+CPSST TMKMGLER L +RIPEI EV+QSIP GPEL  E +E VL+GVRPFL VAGGSI I S+TG
Sbjct:   99 ADGGNVALVEIDGPVVKLELQGNCGTCPSSTQTMKMGLERGLKERIPEIQEVIQSIPEGPELCEEQIEVVLNGVRPFLQVAGGSIDIVSITG 190
[Close]
BLAST of mRNA_H-elongata_contig16550.4125.1 vs. uniprot
Match: F0Y565_AURAN (NifU domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y565_AURAN)

HSP 1 Score: 130 bits (328), Expect = 1.470e-37
Identity = 61/92 (66.30%), Postives = 80/92 (86.96%), Query Frame = 1 
Query:    1 SNSGNVRVVEIDGPVVRLELEGACGSCPSSTMTMKMGLERRLVQRIPEISEVVQSIPNGPELSVENVEKVLDGVRPFLSVAGGSISIQSLTG 276
            S+ GNVR+  I+GPVV+LELEGACG+CPSSTMTMKMGLERRL + IPEIS+VVQ +P+ P++   +V++VL+GVRPFLSVAGG++ + SL+G
Sbjct:   23 SDGGNVRIAGIEGPVVKLELEGACGTCPSSTMTMKMGLERRLKEAIPEISDVVQYLPDTPDMDEASVDEVLEGVRPFLSVAGGTVDLVSLSG 114
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16550.4125.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KSL7_9PHAE3.530e-5294.57NifU domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A835Z016_9STRA1.850e-4680.43NifU-like domain-containing protein n=1 Tax=Tribon... [more]
A0A7R9U202_9STRA2.190e-4175.00Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A4D9D2Y8_9STRA1.060e-4072.83NifU domain-containing protein n=1 Tax=Nannochloro... [more]
W7TNI1_9STRA2.780e-4071.74Nifu like protein n=1 Tax=Nannochloropsis gaditana... [more]
A0A7S1H4I0_9STRA2.050e-3970.65Hypothetical protein n=1 Tax=Thalassionema nitzsch... [more]
A0A7S2C848_9STRA3.220e-3870.65Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A8J2S7I7_9STRA4.570e-3871.74Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2K8U6_9STRA4.960e-3871.74Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
F0Y565_AURAN1.470e-3766.30NifU domain-containing protein (Fragment) n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16550contigH-elongata_contig16550:5436..6197 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score176.0
Seed ortholog evalue8e-42
Seed eggNOG ortholog2880.D7FRC2
Preferred nameNFU3
KEGG rclassRC00055,RC00523
KEGG koko:K04567
KEGG ReactionR03658
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
GOsGO:0003674,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006091,GO:0006790,GO:0006950,GO:0006952,GO:0006996,GO:0008150,GO:0008152,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009657,GO:0009658,GO:0009987,GO:0015979,GO:0016020,GO:0016043,GO:0016226,GO:0019684,GO:0022607,GO:0031163,GO:0032947,GO:0034622,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0048564,GO:0050896,GO:0051186,GO:0065003,GO:0071840,GO:0071944
EggNOG free text desc.NFU1 iron-sulfur cluster scaffold
EggNOG OGsCOG0694@1,KOG2358@2759
EC6.1.1.6
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionNifU-like protein 2, chloroplast precursor (AtCNfu2) (AtCnfU-V)
Ec32 orthologEc-26_002610.1
Exons2
Model size276
Cds size276
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929968.6323047-CDS-H-elongata_contig16550:5435..55221622929968.6323047-CDS-H-elongata_contig16550:5435..5522Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16550 5436..5522 -
1691679228.1755042-CDS-H-elongata_contig16550:5435..55221691679228.1755042-CDS-H-elongata_contig16550:5435..5522Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16550 5436..5522 -
1622929968.6467404-CDS-H-elongata_contig16550:6008..61971622929968.6467404-CDS-H-elongata_contig16550:6008..6197Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16550 6009..6197 -
1691679228.191935-CDS-H-elongata_contig16550:6008..61971691679228.191935-CDS-H-elongata_contig16550:6008..6197Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16550 6009..6197 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16550.4125.1prot_H-elongata_contig16550.4125.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig16550 5436..6197 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig16550.4125.1

>prot_H-elongata_contig16550.4125.1 ID=prot_H-elongata_contig16550.4125.1|Name=mRNA_H-elongata_contig16550.4125.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=92bp
SNSGNVRVVEIDGPVVRLELEGACGSCPSSTMTMKMGLERRLVQRIPEIS
EVVQSIPNGPELSVENVEKVLDGVRPFLSVAGGSISIQSLTG
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mRNA from alignment at H-elongata_contig16550:5436..6197-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig16550.4125.1 ID=mRNA_H-elongata_contig16550.4125.1|Name=mRNA_H-elongata_contig16550.4125.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=762bp|location=Sequence derived from alignment at H-elongata_contig16550:5436..6197- (Himanthalia elongata Himel1 dioecious)
TCAAACAGTGGCAACGTTCGGGTCGTGGAGATAGACGGGCCGGTGGTGAG
GCTGGAGCTGGAGGGGGCGTGCGGCAGTTGCCCCAGTAGCACCATGACGA
TGAAGATGGGCTTGGAGAGGAGACTCGTACAGCGCATCCCAGAGATCAGT
GAGGTTGTGCAATCCATACCCAACGGTCCCGAGCTGTCGGTGAGTGCGGT
GGGAGAGAGAGAGAGAGATAGAAGGGGGGTGGGGTTGGGCAATGCAACGT
CCTCAACGCCGCGGCTCGAATATCTTGGTCACGTGGAGCATTTCATCTAT
GAGGGAAAAAATAAGAGGGACGCGAACGCGATCGGTGCGAACGTGACCCG
GCACTCGGGGTCCAAATCGTTTTCTCGTTCTGCCGTAGCAGTCGAAGTAG
GGTGGCCGGGGCCTCAGGACGTACGAAGAACCCCCTTCGAGATGCTAGCG
TCAACCCTCCCACAGGCTTTTTACGTTGGACTCTCACGGAGCCAGGTGTT
CCAGTCTGGTCTGGTCCTACGAAGTTCGCGTTTGCGACGAAACCGCGTTA
TCACCTGGGGGAAAGGTTCTCGTCGCTTGACGTGAAGCCCCTCCAAGCTA
TACGCTGTCTTGAATATATTTCCGTCTCACGGAAACCTCCTTGCCGTTGG
TGTGCATATGTCTCGGCGCTGTAAGGTGGAAAACGTGGAGAAGGTTTTGG
ATGGGGTGAGGCCGTTTCTCAGCGTGGCGGGTGGAAGCATCTCGATACAG
TCGCTCACGGGC
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Coding sequence (CDS) from alignment at H-elongata_contig16550:5436..6197-

>mRNA_H-elongata_contig16550.4125.1 ID=mRNA_H-elongata_contig16550.4125.1|Name=mRNA_H-elongata_contig16550.4125.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=552bp|location=Sequence derived from alignment at H-elongata_contig16550:5436..6197- (Himanthalia elongata Himel1 dioecious)
TCAAACAGTGGCAACGTTCGGGTCGTGGAGATAGACGGGCCGGTGGTGAG
GCTGGAGCTGGAGGGGGCGTGCGGCAGTTGCCCCAGTAGCACCATGACGA
TGAAGATGGGCTTGGAGAGGAGACTCGTACAGCGCATCCCAGAGATCAGT
GAGGTTGTGCAATCCATACCCAACGGTCCCGAGCTGTCGTCAAACAGTGG
CAACGTTCGGGTCGTGGAGATAGACGGGCCGGTGGTGAGGCTGGAGCTGG
AGGGGGCGTGCGGCAGTTGCCCCAGTAGCACCATGACGATGAAGATGGGC
TTGGAGAGGAGACTCGTACAGCGCATCCCAGAGATCAGTGAGGTTGTGCA
ATCCATACCCAACGGTCCCGAGCTGTCGGTGGAAAACGTGGAGAAGGTTT
TGGATGGGGTGAGGCCGTTTCTCAGCGTGGCGGGTGGAAGCATCTCGATA
CAGTCGCTCACGGGCGTGGAAAACGTGGAGAAGGTTTTGGATGGGGTGAG
GCCGTTTCTCAGCGTGGCGGGTGGAAGCATCTCGATACAGTCGCTCACGG
GC
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