prot_H-elongata_contig165357.4115.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig165357.4115.1
Unique Nameprot_H-elongata_contig165357.4115.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length52
Homology
BLAST of mRNA_H-elongata_contig165357.4115.1 vs. uniprot
Match: A0A6H5KVU5_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVU5_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 5.020e-18
Identity = 44/52 (84.62%), Postives = 48/52 (92.31%), Query Frame = 0
Query:    1 MARVARVLLSVPASAAVLERDFSTAGRLITGSRSRLAGEYVEMTLFLNGNKE 52
            MAR ARVLLSVPAS+AVLERDFSTAGRLITG+RSRL+  YVEM LFLNGN+E
Sbjct:  727 MARAARVLLSVPASSAVLERDFSTAGRLITGARSRLSAAYVEMVLFLNGNQE 778          
BLAST of mRNA_H-elongata_contig165357.4115.1 vs. uniprot
Match: A0A6H5JZ82_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ82_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 1.170e-11
Identity = 33/50 (66.00%), Postives = 41/50 (82.00%), Query Frame = 0
Query:    1 MARVARVLLSVPASAAVLERDFSTAGRLITGSRSRLAGEYVEMTLFLNGN 50
            +ARVARV+   PASAAVLERDFS AGR++T SRS +  +YVEM +FL+GN
Sbjct:  621 LARVARVVFGAPASAAVLERDFSNAGRMMTSSRSTMDSKYVEMIMFLHGN 670          
BLAST of mRNA_H-elongata_contig165357.4115.1 vs. uniprot
Match: A0A6H5KCJ3_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCJ3_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 1.140e-10
Identity = 33/51 (64.71%), Postives = 40/51 (78.43%), Query Frame = 0
Query:    1 MARVARVLLSVPASAAVLERDFSTAGRLITGSRSRL-AGEYVEMTLFLNGN 50
            +ARVARV+   PASAAVLERDFS AGR++T SR  + +  YVEM LFL+GN
Sbjct:    9 LARVARVVFGAPASAAVLERDFSNAGRMMTSSRRTMDSTTYVEMILFLHGN 59          
BLAST of mRNA_H-elongata_contig165357.4115.1 vs. uniprot
Match: A0A6H5JNY1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNY1_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 3.630e-10
Identity = 32/50 (64.00%), Postives = 40/50 (80.00%), Query Frame = 0
Query:    1 MARVARVLLSVPASAAVLERDFSTAGRLITGSRSRLAGEYVEMTLFLNGN 50
            +ARVARV++   ASAAVLE DFS AGR++T SRS +  +YVEM LFL+GN
Sbjct:  394 LARVARVVIGALASAAVLEHDFSNAGRMMTSSRSTMDSKYVEMILFLHGN 443          
BLAST of mRNA_H-elongata_contig165357.4115.1 vs. uniprot
Match: A0A225UGF7_9STRA (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UGF7_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 5.770e-9
Identity = 29/48 (60.42%), Postives = 37/48 (77.08%), Query Frame = 0
Query:    4 VARVLLSVPASAAVLERDFSTAGRLITGSRSRLAGEYVEMTLFLNGNK 51
            VARVL S+P+S+A +ERDF TAGR++T  RS LA   V+MT FLN N+
Sbjct:   42 VARVLFSIPSSSAQIERDFGTAGRMVTSQRSSLAPCNVDMTTFLNCNR 89          
BLAST of mRNA_H-elongata_contig165357.4115.1 vs. uniprot
Match: H3GTQ6_PHYRM (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GTQ6_PHYRM)

HSP 1 Score: 55.8 bits (133), Expect = 1.410e-8
Identity = 27/48 (56.25%), Postives = 37/48 (77.08%), Query Frame = 0
Query:    4 VARVLLSVPASAAVLERDFSTAGRLITGSRSRLAGEYVEMTLFLNGNK 51
            VARV+ S+P+S+A +ERDF TAGR++T  R+ LA   V+MT FLN N+
Sbjct:   10 VARVVFSLPSSSAQIERDFGTAGRMVTPQRNSLASHNVDMTTFLNCNR 57          
BLAST of mRNA_H-elongata_contig165357.4115.1 vs. uniprot
Match: D8LBK4_ECTSI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK4_ECTSI)

HSP 1 Score: 54.7 bits (130), Expect = 2.600e-7
Identity = 29/50 (58.00%), Postives = 36/50 (72.00%), Query Frame = 0
Query:    1 MARVARVLLSVPASAAVLERDFSTAGRLITGSRSRLAGEYVEMTLFLNGN 50
            +AR ARV+   PASAAVLERDF+ A  ++  SRS    +YVEM LFL+GN
Sbjct:  561 LARAARVVFGAPASAAVLERDFTDAWCMMASSRSAGDAKYVEMVLFLHGN 610          
BLAST of mRNA_H-elongata_contig165357.4115.1 vs. uniprot
Match: A0A0W8D5H4_PHYNI (Dimer_Tnp_hAT domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A0W8D5H4_PHYNI)

HSP 1 Score: 52.8 bits (125), Expect = 7.890e-7
Identity = 26/48 (54.17%), Postives = 36/48 (75.00%), Query Frame = 0
Query:    4 VARVLLSVPASAAVLERDFSTAGRLITGSRSRLAGEYVEMTLFLNGNK 51
            VARVL S+P+S+A +ERDF TAGR++T  RS L    V+M ++LN N+
Sbjct:  158 VARVLFSMPSSSAQIERDFGTAGRMVTPERSSLEPYNVDMAMYLNCNR 205          
BLAST of mRNA_H-elongata_contig165357.4115.1 vs. uniprot
Match: UPI0019661A93 (zinc finger BED domain-containing protein DAYSLEEPER-like isoform X2 n=1 Tax=Polypterus senegalus TaxID=55291 RepID=UPI0019661A93)

HSP 1 Score: 52.8 bits (125), Expect = 9.180e-7
Identity = 27/50 (54.00%), Postives = 39/50 (78.00%), Query Frame = 0
Query:    1 MARVARVLLSVPASAAVLERDFSTAGRLITGSRSRLAGEYVEMTLFLNGN 50
            +AR+AR +LS+PA++A  ERDFSTAG +I+  RS+L+ E V+  LFL+ N
Sbjct:  184 LARIARSILSIPATSATSERDFSTAGCVISERRSQLSPETVDDVLFLHSN 233          
BLAST of mRNA_H-elongata_contig165357.4115.1 vs. uniprot
Match: W2QQF5_PHYPN (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Phytophthora parasitica (strain INRA-310) TaxID=761204 RepID=W2QQF5_PHYPN)

HSP 1 Score: 52.8 bits (125), Expect = 1.240e-6
Identity = 26/48 (54.17%), Postives = 36/48 (75.00%), Query Frame = 0
Query:    4 VARVLLSVPASAAVLERDFSTAGRLITGSRSRLAGEYVEMTLFLNGNK 51
            VARVL S+P+S+A +ERDF TAGR++T  RS L    V+M ++LN N+
Sbjct:  386 VARVLFSMPSSSAQIERDFGTAGRMVTPERSSLEPYNVDMAMYLNCNR 433          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig165357.4115.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KVU5_9PHAE5.020e-1884.62Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JZ82_9PHAE1.170e-1166.00Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KCJ3_9PHAE1.140e-1064.71Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JNY1_9PHAE3.630e-1064.00Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A225UGF7_9STRA5.770e-960.42Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ph... [more]
H3GTQ6_PHYRM1.410e-856.25Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ph... [more]
D8LBK4_ECTSI2.600e-758.00Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A0W8D5H4_PHYNI7.890e-754.17Dimer_Tnp_hAT domain-containing protein n=3 Tax=Ph... [more]
UPI0019661A939.180e-754.00zinc finger BED domain-containing protein DAYSLEEP... [more]
W2QQF5_PHYPN1.240e-654.17Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ph... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008906HAT, C-terminal dimerisation domainPFAMPF05699Dimer_Tnp_hATcoord: 2..49
e-value: 1.1E-9
score: 38.0
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 16..52
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 12..15
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..11
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..15
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 2..49

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig165357contigH-elongata_contig165357:1146..1301 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig165357.4115.1mRNA_H-elongata_contig165357.4115.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig165357 1140..1301 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig165357.4115.1 ID=prot_H-elongata_contig165357.4115.1|Name=mRNA_H-elongata_contig165357.4115.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=52bp
MARVARVLLSVPASAAVLERDFSTAGRLITGSRSRLAGEYVEMTLFLNGN
KE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008906HATC_C_dom
IPR012337RNaseH-like_sf