mRNA_H-elongata_contig16533.4111.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig16533.4111.1 vs. uniprot
Match: D8LJ08_ECTSI (Carotenoid oxygenase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ08_ECTSI) HSP 1 Score: 365 bits (936), Expect = 8.110e-121 Identity = 173/262 (66.03%), Postives = 203/262 (77.48%), Query Frame = 1
Query: 13 RNRDGDRAYGHWFDGDGHISKIVFKDGRVYAQNRFVDTKCWDSGAPEGQGSAGTPRAWTPRPGGWLKNVFRMPGNPVNTNVMIMGGKLYALCEAGKPVEIDPVTLETLQEEDLGGIQAFYSAHPTADPSTGETFGIATGGKNGALEITRMSPDGTLDKSALFTPPTINVWHDSALTDEYVVAVTSPFVATAGRILKALMGFSTIGLAFKWDELLKSEALFFSRETLELVNRVELPDAVSSYHLINAFQEEEKGDAVTVLVCQ 798
RN +G+R YGHWFDGDG ISK+VFKDGRVYAQNRFV T WD APEG+ +AGT R WTPRPGGW KNV + GN NT+VM+ GGKLYAL E GKP EIDPVTLETL E DLGGIQAFYSAHPT D TGETF I GG GALEIT++SPDG L KS +TPP WHD+ +TDE+VVAV+SPF A+ I +++GF +G AF+W++ +KSEA FFSRETLELV RVELP A SSYH++N FQEE KG V+V++ +
Sbjct: 113 RNWEGERMYGHWFDGDGMISKVVFKDGRVYAQNRFVSTDSWDPNAPEGKRAAGTRRPWTPRPGGWRKNVLKQTGNLANTSVMVKGGKLYALYEGGKPTEIDPVTLETLGERDLGGIQAFYSAHPTTDRDTGETFNIGIGGAKGALEITKLSPDGVLQKSTTYTPPASLFWHDNTITDEFVVAVSSPFAASLKSIFASMLGFGQLGDAFRWNDNMKSEAFFFSRETLELVKRVELPGAPSSYHIVNGFQEEGKGSNVSVIIAK 374
BLAST of mRNA_H-elongata_contig16533.4111.1 vs. uniprot
Match: A0A1X9NLA8_9GAMM (Dioxygenase n=1 Tax=Oceanicoccus sagamiensis TaxID=716816 RepID=A0A1X9NLA8_9GAMM) HSP 1 Score: 144 bits (364), Expect = 1.620e-36 Identity = 94/256 (36.72%), Postives = 142/256 (55.47%), Query Frame = 1
Query: 10 GRNRDGDRAYGHWFDGDGHISKIVFKDGRVYAQNRFVDT-KCWDSGAPEGQGSAGTPRAWTPRPGGWLKNVFRMPGNPVNTNVMIMGGKLYALCEAGKPVEIDPVTLETLQEEDLGGIQAF---YSAHPTADPSTGETFGIATGG-KNGALEITRMSPDGTL-DKSALFTPPTINVWHDSALTDEYVVAVTSPFVATAGRILKALMGFSTIGLAFKWDELLKSEALFFSRETLELVNRVELPDAVSSYHLINAFQE 759
GRN+ G++ +GHWFDGDG I+ + FK G+V+ +NR+V T K A + G T PGG+LKN+FR PGN NTNV++ GGKL AL E GKP E+DP TL+T+ E + G+ + +SAH DP TG + G L +++P+G + DK + + ++ HD A+T + V V P A K L GF++I + ++D K++ + TL ++ E D+ +HL NA ++
Sbjct: 58 GRNKIGEQQFGHWFDGDGMINAVTFKAGQVHFKNRYVRTPKYMHETAQQRILYRGV---GTQIPGGFLKNIFRTPGNAANTNVILHGGKLLALWEGGKPYELDPATLQTVGEYNFDGMLSTGQPFSAHSRHDPRTGFLYNFGVFGIPKPKLHFYKINPEGEMVDKKSHYVGD-YSMCHDFAITKNHAVFVLCP--AFMRSPFKFLFGFNSIMQSIEFDPSEKTKVVVIDLNTLHIIREFEF-DSFFGFHLGNAHEQ 306
BLAST of mRNA_H-elongata_contig16533.4111.1 vs. uniprot
Match: A0A812TMX6_9DINO (Hypothetical protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812TMX6_9DINO) HSP 1 Score: 145 bits (366), Expect = 6.340e-36 Identity = 105/279 (37.63%), Postives = 141/279 (50.54%), Query Frame = 1
Query: 1 SGGGRNRDGDRAYGHWFDGDGHISKIVF--KDGRVYAQNRFVDTKCWDSGA-PE-------GQGSAGTPRAWTPRPGG-WLKNVFRMPGNPVNTNVMIMGGKLYALCEAGKPVEIDPVTLETLQEE-------DLGGIQAFYSAHPTADPSTGETFGIATG-GKNGALEITRMSPDGTLDKSALFTPPTINVWHDSALTDEYVVAVTSPFVATAGRILKALMGFSTIGLAFKWDELLKSEALFFSRETLELVNRVELPDAVSSYHLINAFQEEEKGDAV 780
+G GR R G+ YGHWFDGDG ++ + K +RFV T +++ PE G G A AWTP G L N+FR+P NP NTNV+ G +L ALCE G P +DP TLETL +E G+Q F+SAHP DP +GE F I G +LE+ + S D L + I HD A+T EYVV + P+ + + +L +G F+W E + L R L V L AVS YH +NA+ +++ G AV
Sbjct: 187 NGPGRIRIGESQYGHWFDGDGFVTALTVDGKQQEAAFTSRFVKTNRFEAQQKPEAFFKTERGSGMA-LMGAWTPSANGDLLSNIFRLPTNPANTNVLWWGDRLLALCEGGTPYALDPGTLETLGQELFRHPSLQQSGVQ-FFSAHPKQDPESGELFNIGLKIGLEPSLEVYKCSADRLLLERTGIPLADITFVHDFAITREYVVLIIPPWSCSTSGLATSLWK-GALGQFFEWKEDAGTRLLVLRRSDLSTVFDKSLKPAVSLYHTVNAY-DDDAGAAV 461
BLAST of mRNA_H-elongata_contig16533.4111.1 vs. uniprot
Match: A0A7S3Z609_9EUKA (Hypothetical protein n=3 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3Z609_9EUKA) HSP 1 Score: 144 bits (362), Expect = 8.700e-36 Identity = 99/280 (35.36%), Postives = 145/280 (51.79%), Query Frame = 1
Query: 1 SGGGRNRDGDRAYGHWFDGDGHISKIVFKDGRVYAQN--RFVDTKCWD--SGAPEGQG--SAGTPRAWTPRPGGWLKNVFRMPGNPVNTNVMIMGGKLYALCEAGKPVEIDPVTLETLQEEDLGGIQ--AFYSAHP-----TADPSTGETF---GIATGGKNGALEITRMSPDGTLDKSALFTPPTINVWHDSALTDEYVVAVTSPFVATAGRILKALMGFSTIGLAFKWDELLKSEALFFSRETLELVNRVELPDAVSSYHLINAFQEEEKGDAVTVLV 792
+G GR R G YGHWFDGDG +S++ R A R+V T + GAP+ G S G AWT R GG L N+ R P NP NT+ + GKL ALCE G P+E+DP +LET+ E + + AF+SAHP T D G+T G+ G L + R + + S ++ HD ALT+ Y V +P+ + +L+ L+G +G+ +KW K+ + F +ETLE++ P A++ H+IN + +E V +L+
Sbjct: 126 NGAGRIRVGSNQYGHWFDGDGFVSRLSLDPTRNQASLTCRYVRTDRYQRQEGAPDEAGFRSRG---AWTQREGGALGNMGRSPTNPANTSPLSWNGKLLALCEGGPPIELDPESLETIGEYRMENLPKGAFFSAHPKEDHFTTDKGQGKTIFNNGLVIGPPM-TLRLLRATEKEGVTNSRTLPMSALSFVHDFALTERYGVIFLNPYTVSYQDLLQGLVGTKALGMLYKWRPEDKTRIVVFDKETLEVIRDFRAP-AMTFDHVINGYDLDEDRIRVQLLL 400
BLAST of mRNA_H-elongata_contig16533.4111.1 vs. uniprot
Match: A0A1Q9D885_SYMMI (Apocarotenoid-15,15'-oxygenase n=3 Tax=Symbiodinium TaxID=2949 RepID=A0A1Q9D885_SYMMI) HSP 1 Score: 136 bits (343), Expect = 1.310e-33 Identity = 98/274 (35.77%), Postives = 139/274 (50.73%), Query Frame = 1
Query: 1 SGGGRNRDGDRAYGHWFDGDGHISKIVFKDGR---VYAQNRFVDTKCWD----SG----APEGQGSAGTPRAWTPRPGG-WLKNVFRMPGNPVNTNVMIMGGKLYALCEAGKPVEIDPVTLETLQEE-------DLGGIQAFYSAHPTADPSTGETFGIATG-GKNGALEITRMSPDGTLDKSALFTPPTINVWHDSALTDEYVVAVTSPFVATAGRILKALMGFSTIGLAFKWDELLKSEALFFSRETLELVNRVELPDAVSSYHLINAFQEE 762
+G GR R G+ Y HWFDGDG ++ + DGR +RFV T+ ++ SG G G A AWTP G +L NVFR+P NP NTNV+ +L ALCE G P +DP LETL EE G+Q F+SAHP DP +GE F I G LE+ + S + +L K + + HD A+T ++V+ + P+ + + K+L + F+W E + + R L +V L AVS YH +NA+ ++
Sbjct: 65 NGPGRIRIGESKYDHWFDGDGFVTSLSV-DGRNQEAAFTSRFVKTQRYEVQQKSGELVRTERGSGMASM-GAWTPASNGDFLSNVFRLPTNPANTNVLWWDDRLLALCEGGIPYALDPGNLETLGEELFRDPPLTQSGVQ-FFSAHPKRDPDSGELFNIGLKIGLEPTLEVYKCSANRSLMKRTVLALTDLAFVHDFAITRKHVILIIPPWSCSTTGLAKSLWK-GAMAQFFEWKEDAGTRLIVLKRSDLSVVFDSTLQPAVSLYHTVNAYDDD 334
BLAST of mRNA_H-elongata_contig16533.4111.1 vs. uniprot
Match: A0A812P1W5_SYMPI (Hypothetical protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812P1W5_SYMPI) HSP 1 Score: 137 bits (345), Expect = 5.210e-33 Identity = 91/275 (33.09%), Postives = 138/275 (50.18%), Query Frame = 1
Query: 1 SGGGRNRDGDRAYGHWFDGDGHISKIVFKDGRVYAQ--NRFVDTKCWD----------SGAPEGQGSAGTPRAWTPRPGG-WLKNVFRMPGNPVNTNVMIMGGKLYALCEAGKPVEIDPVTLETLQEE-------DLGGIQAFYSAHPTADPSTGETFGIATG-GKNGALEITRMSPDGTLDKSALFTPPTINVWHDSALTDEYVVAVTSPFVATAGRILKALMGFSTIGLAFKWDELLKSEALFFSRETLELVNRVELPDAVSSYHLINAFQEE 762
+G GR R GD YGHWFDGDG ++ + + A +RF+ T+ ++ + A G G AWTP G L N+FR+P NP NTN++ +L ALCE G P +DP TLET+ E G+Q F+SAHP DP +G+ F + G ALE+ + S D L+ + HD A+T ++VV + P+ + + K+L +G F+W + + + + R L +V L A+S YH +NA+ ++
Sbjct: 119 NGPGRIRVGDSQYGHWFDGDGFVTALALDGSQQEAAFTSRFIRTQRFEVQQKPDALFKTKAGSGMALMG---AWTPAANGDLLANIFRLPTNPANTNILQWDDRLLALCEGGLPYALDPGTLETMGPELFRDPSLSQSGVQ-FFSAHPKRDPESGDLFNVGLKIGLQPALEVYKCSADRVLEMRTDIHLADLAFVHDFAITRKHVVLIIPPWCCSTTGLAKSLWQ-GALGRFFEWKDSVGTRLIVLQRSDLSVVFDQTLMPAISLYHTVNAYDDD 388
BLAST of mRNA_H-elongata_contig16533.4111.1 vs. uniprot
Match: A0A7S4K0C9_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4K0C9_9STRA) HSP 1 Score: 135 bits (340), Expect = 1.510e-32 Identity = 97/313 (30.99%), Postives = 143/313 (45.69%), Query Frame = 1
Query: 1 SGGGRNRDGDRAYGHWFDGDGHISKIVFKD--------GRVYAQNRFVDTK--CWDSGAPEG---QGSAGTPRAWTPRP------------GGWLKNVFRMPGNPVNTNVM------------IMGGKLYALCEAGKPVEIDPVTLETLQEE-------DLGG--IQAFYSAHPTADPSTGETFG----IATGGKNGALEITRMSPDGTLDKSALFTPPTINVWHDSALTDEYVVAVTSPFVATAGRILKALMGFSTIGLAFKWDELLKSEALFFSRETLELVNRVELPDAVSSYHLINAFQEEEKGDAVTVL 789
+G GR R G R YGHWFDGDG+++ + GR RF D + G EG + G P P G W +N+FR+P NP NT M +M +LYALCE G P+++DP TL+ + +E +GG +Q+F+SAH + P TG+ + I G + + R+S DG L++ L P HD+ L+ +V V P++ IL + G S + ++WD SR L L +ELP+ +S YHL++A E + T+L
Sbjct: 136 NGPGRIRIGARQYGHWFDGDGYVTLLSLDGRANRARFAGRYVRSKRFRDQERLMAQLGGVEGITPKDGDGKDEPNDPPPLAFTGAWTLGGRGKWYENIFRIPTNPANTATMWLPPLRKGGEEQLMPPRLYALCEGGNPIQLDPFTLDVVGDEAAFTSTVGVGGERVQSFFSAHFSRCPITGDIYNHGYVIRPGPLGKVINMMRLSRDGVLERQVLSEMPFDTFTHDAVLSVSCIVYVVQPYLMPEEAILSTIAGQSPLASNYQWDSKTPCAIHVHSRSDLRLKWTIELPETMSMYHLVDAHDERAEDGDSTIL 448
BLAST of mRNA_H-elongata_contig16533.4111.1 vs. uniprot
Match: A0A8J5XI00_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XI00_DIALT) HSP 1 Score: 134 bits (336), Expect = 2.330e-32 Identity = 93/275 (33.82%), Postives = 143/275 (52.00%), Query Frame = 1
Query: 1 SGGGRNRDGDRAYGHWFDGDGHISKIVFKDGRV-YAQNRFVDTKCWDSGAPEGQGSAGTPR----AWTPR-PGGWLKNVFRMPGNPVNTNVMIM--GGKLYALCEAGKPVEIDPVTLETLQEE---------DLGGIQ-AFYSAHPTADPSTGETFGIATG-GKNGALEITRMSPDGTLDKSALFTPPTINVWHDSALTDEYVVAVTSPFVATAGRILKALMGFSTIGLAFKWDELLKSEALFFSRETLELVNRVELPDAVSSYHLINAFQEEEK 768
+G GR R G + Y HWFDGDG ++++ R + RFV T + + QG AWTPR GG L N R+P NP NTNV + G+LYALCE G+P+E+DP+TLET E L G+ + AH DP+ G + G + L++ R+SPDG + S F ++ ++HD +++ +++ +P+ + R+L AL+G G F W+ +S + + TL+ V + P S YH +NAF++ E+
Sbjct: 65 NGAGRIRVGTQLYSHWFDGDGFVTRLELDGSRTALSSGRFVRTPRFLA-----QGDTTDTMMVRGAWTPRGDGGVLANCLRLPSNPANTNVARLPPDGRLYALCEGGRPLELDPLTLETTGGEYDARGALRSPLPGLPPTTFGAHMRVDPTDGTIYNFGLDYGLSLKLKLLRISPDGAVS-SRDFGLQSMPLYHDLSISGNFLILTRTPYEISTARVLGALVGSG--GSMFAWNADAQSHVDVYDKRTLQQVASIASPP-FSCYHHVNAFEDPER 330
BLAST of mRNA_H-elongata_contig16533.4111.1 vs. uniprot
Match: A0A7S2XA76_9EUKA (Hypothetical protein n=2 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2XA76_9EUKA) HSP 1 Score: 133 bits (334), Expect = 4.230e-32 Identity = 93/280 (33.21%), Postives = 144/280 (51.43%), Query Frame = 1
Query: 1 SGGGRNRDGDRAYGHWFDGDGHISKIVFK--DGRVYAQNRFVDTKCWD--SGAPEGQG--SAGTPRAWTPRPGGWLKNVFRMPGNPVNTNVMIMGGKLYALCEAGKPVEIDPVTLETLQEEDLGGIQ--AFYSAHP-----TADPSTGETF---GIATGGKNGALEITRMSPDGTLDKSALFTPPTINVWHDSALTDEYVVAVTSPFVATAGRILKALMGFSTIGLAFKWDELLKSEALFFSRETLELVNRVELPDAVSSYHLINAFQEEEKGDAVTVLV 792
+G GR R G+ YGHWFDGDG +S++ + + R+V T + AP+ G S G AWT R GG + N+ R P NP NT KL ALCE G P+E+DP +LETL E + + AF+SAHP D G+T G+ G L I R + + + ++ HD ALT+ Y V +P+ + +L+ L+G +G+ +KW K+ + F ++TLE+V +P A++ H+INA+ +++ V +++
Sbjct: 69 NGAGRIRIGNNRYGHWFDGDGFVSRLHLDATNNQASLTGRYVRTDRYQRQQEAPDDAGFRSRG---AWTQREGGAVGNMGRSPTNPANTAPFSWNQKLLALCEGGPPMELDPESLETLGEYRMANLPKGAFFSAHPKVDHFATDEGQGKTIFNNGLVIGPPM-QLRIFRATEKEGVTNCRTLSMSALSFVHDFALTERYGVIFLNPYTVSYQDLLQGLVGTKALGMLYKWRPEDKTRVVVFDKDTLEIVRDFRVP-AMTYDHVINAYDLDKERIRVQLML 343
BLAST of mRNA_H-elongata_contig16533.4111.1 vs. uniprot
Match: UPI001FF50FBD (carotenoid oxygenase family protein n=1 Tax=Gordonia alkaliphila TaxID=1053547 RepID=UPI001FF50FBD) HSP 1 Score: 128 bits (322), Expect = 1.280e-30 Identity = 92/266 (34.59%), Postives = 131/266 (49.25%), Query Frame = 1
Query: 10 GRNRDGDRAYGHWFDGDGHISKIVFKDGRVYAQNRFVDTKCWDSGAPEGQGSAGTPRAWTPRPGGWLKNVFRMPGNPVNTNVMIMGGKLYALCEAGKPVEIDPVTLETLQEEDLGG---IQAFYSAHPTADPSTGE--TFGIATGGKNGALEITRMSPDGTLDKSALFTPPTINVWHDSALTDEYVVAVTSPFVATAGRILKALMGFSTIGLAFKWDELLKSEALFFSRETLELVNRVELPDAVSSYHLINAFQEEEKGDAVTVLV 792
GR G GH FDGDG +S+ D + +NR+V T+ ++ + + G T RPGG N+FRMP N NTNV+ G L++L E G+P +DP TL TL ED G + +SAHP D TGE FGI + + R GTL + A F + HD A+T+ Y+V + P V GR + AL+G +I ++ L + R+ + R+ DA+ +H NA+ EE GD V +V
Sbjct: 44 GRLEIGGHRLGHIFDGDGMVSRFAIDDDGIGFRNRYVRTRHFNKASQDWIGRG----IGTLRPGGLAANIFRMPANVSNTNVVAHAGGLFSLWEGGRPYRLDPETLATLGREDFDGALKLLGAFSAHPKIDARTGEMFNFGIEVFPRP-MIRCYRRDRSGTLTQLATFPVSRPSFCHDFAITERYLVFLVDPIVV--GRPISALLGLDSIDNCLTFNADLGTRVALIPRDGGKA--RILETDALFHFHANNAY-EEPGGDVVVEIV 299 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16533.4111.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig16533.4111.1 >prot_H-elongata_contig16533.4111.1 ID=prot_H-elongata_contig16533.4111.1|Name=mRNA_H-elongata_contig16533.4111.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=266bp SGGGRNRDGDRAYGHWFDGDGHISKIVFKDGRVYAQNRFVDTKCWDSGAPback to top mRNA from alignment at H-elongata_contig16533:9..2914- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig16533.4111.1 ID=mRNA_H-elongata_contig16533.4111.1|Name=mRNA_H-elongata_contig16533.4111.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2906bp|location=Sequence derived from alignment at H-elongata_contig16533:9..2914- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig16533:9..2914- >mRNA_H-elongata_contig16533.4111.1 ID=mRNA_H-elongata_contig16533.4111.1|Name=mRNA_H-elongata_contig16533.4111.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1596bp|location=Sequence derived from alignment at H-elongata_contig16533:9..2914- (Himanthalia elongata Himel1 dioecious)back to top |