mRNA_H-elongata_contig165286.4110.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig165286.4110.1
Unique NamemRNA_H-elongata_contig165286.4110.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig165286.4110.1 vs. uniprot
Match: A0A6H5L6A0_9PHAE (SAP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6A0_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 9.040e-7
Identity = 29/38 (76.32%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:  787 SKSGLMKLTVKNLREHCKEAGVPTTGTKADLVKRLLES 900
            SK GLMKLTVK+LRE CK AGVPT+G KAD+V RLL+S
Sbjct:  151 SKEGLMKLTVKDLRERCKAAGVPTSGRKADIVDRLLDS 188
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig165286.4110.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L6A0_9PHAE9.040e-776.32SAP domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig165286contigH-elongata_contig165286:482..1405 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size924
Cds size924
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929967.3333564-CDS-H-elongata_contig165286:481..14051622929967.3333564-CDS-H-elongata_contig165286:481..1405Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig165286 482..1405 +
1691679227.669864-CDS-H-elongata_contig165286:481..14051691679227.669864-CDS-H-elongata_contig165286:481..1405Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig165286 482..1405 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig165286.4110.1prot_H-elongata_contig165286.4110.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig165286 482..1405 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig165286.4110.1

>prot_H-elongata_contig165286.4110.1 ID=prot_H-elongata_contig165286.4110.1|Name=mRNA_H-elongata_contig165286.4110.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=308bp
KALAEASEILEGRVREYEGRLTALTRENDYLRKDYGAEIERMEAERVATR
DRVSNLEASLSRAEFRADEQREALERELALMAGELDRRSEELAAATATTD
GLRGAIDSIKAKAEAQEAAQKAFVAAAEMQRREQEEEERAVAEENARALE
NDTEDREEATARALQKSEIVKEKDEKKAERGVMQKNRGVRAPTREKNARE
QARPRAARTKSKAASPAASESEQPRKPAPAARAGTEMPQVATAGTGSGTA
ARGSRAENTLPKSKSGLMKLTVKNLREHCKEAGVPTTGTKADLVKRLLES
LGVDMIR*
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mRNA from alignment at H-elongata_contig165286:482..1405+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig165286.4110.1 ID=mRNA_H-elongata_contig165286.4110.1|Name=mRNA_H-elongata_contig165286.4110.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=924bp|location=Sequence derived from alignment at H-elongata_contig165286:482..1405+ (Himanthalia elongata Himel1 dioecious)
AAGGCCTTGGCCGAGGCCTCCGAGATCCTGGAAGGTCGGGTCCGAGAGTA
CGAGGGTCGCTTGACGGCACTCACACGGGAGAATGATTATCTCCGCAAGG
ACTATGGCGCCGAGATCGAGCGCATGGAGGCCGAGCGCGTGGCCACGCGC
GACCGTGTTTCAAACCTGGAGGCCTCCCTCTCCAGAGCGGAGTTTCGGGC
TGACGAGCAGCGGGAGGCGCTCGAGAGGGAGCTGGCCTTAATGGCAGGCG
AGCTGGACCGGCGTTCGGAGGAGCTCGCGGCGGCGACCGCAACGACGGAT
GGGTTGAGAGGCGCCATCGATTCGATCAAGGCGAAAGCGGAAGCTCAGGA
GGCAGCGCAAAAGGCTTTTGTGGCCGCAGCCGAGATGCAGAGGAGGGAGC
AGGAGGAGGAGGAGCGGGCCGTGGCGGAGGAAAATGCACGCGCTTTGGAG
AACGATACGGAGGATAGGGAAGAGGCGACGGCGAGGGCGTTACAGAAAAG
CGAGATAGTAAAGGAGAAAGATGAGAAAAAAGCCGAGCGGGGGGTGATGC
AGAAGAATCGGGGCGTGAGGGCGCCCACGAGAGAGAAGAACGCACGAGAG
CAAGCGCGACCCAGGGCCGCGCGGACGAAGTCAAAAGCGGCGTCACCGGC
GGCATCAGAATCAGAGCAACCGCGGAAACCTGCTCCTGCTGCTCGTGCTG
GTACCGAAATGCCTCAGGTGGCGACCGCTGGGACTGGGTCTGGAACTGCG
GCACGGGGGTCTAGAGCGGAAAATACTCTGCCGAAGTCCAAGTCAGGGTT
GATGAAGCTCACCGTGAAGAACTTGCGGGAGCATTGCAAGGAGGCGGGCG
TGCCAACGACGGGAACGAAGGCGGATCTCGTCAAGCGACTTTTGGAATCT
CTCGGTGTCGACATGATAAGATGA
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Coding sequence (CDS) from alignment at H-elongata_contig165286:482..1405+

>mRNA_H-elongata_contig165286.4110.1 ID=mRNA_H-elongata_contig165286.4110.1|Name=mRNA_H-elongata_contig165286.4110.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1848bp|location=Sequence derived from alignment at H-elongata_contig165286:482..1405+ (Himanthalia elongata Himel1 dioecious)
AAGGCCTTGGCCGAGGCCTCCGAGATCCTGGAAGGTCGGGTCCGAGAGTA
CGAGGGTCGCTTGACGGCACTCACACGGGAGAATGATTATCTCCGCAAGG
ACTATGGCGCCGAGATCGAGCGCATGGAGGCCGAGCGCGTGGCCACGCGC
GACCGTGTTTCAAACCTGGAGGCCTCCCTCTCCAGAGCGGAGTTTCGGGC
TGACGAGCAGCGGGAGGCGCTCGAGAGGGAGCTGGCCTTAATGGCAGGCG
AGCTGGACCGGCGTTCGGAGGAGCTCGCGGCGGCGACCGCAACGACGGAT
GGGTTGAGAGGCGCCATCGATTCGATCAAGGCGAAAGCGGAAGCTCAGGA
GGCAGCGCAAAAGGCTTTTGTGGCCGCAGCCGAGATGCAGAGGAGGGAGC
AGGAGGAGGAGGAGCGGGCCGTGGCGGAGGAAAATGCACGCGCTTTGGAG
AACGATACGGAGGATAGGGAAGAGGCGACGGCGAGGGCGTTACAGAAAAG
CGAGATAGTAAAGGAGAAAGATGAGAAAAAAGCCGAGCGGGGGGTGATGC
AGAAGAATCGGGGCGTGAGGGCGCCCACGAGAGAGAAGAACGCACGAGAG
CAAGCGCGACCCAGGGCCGCGCGGACGAAGTCAAAAGCGGCGTCACCGGC
GGCATCAGAATCAGAGCAACCGCGGAAACCTGCTCCTGCTGCTCGTGCTG
GTACCGAAATGCCTCAGGTGGCGACCGCTGGGACTGGGTCTGGAACTGCG
GCACGGGGGTCTAGAGCGGAAAATACTCTGCCGAAGTCCAAGTCAGGGTT
GATGAAGCTCACCGTGAAGAACTTGCGGGAGCATTGCAAGGAGGCGGGCG
TGCCAACGACGGGAACGAAGGCGGATCTCGTCAAGCGACTTTTGGAATCT
CTCGGTGTCGACATGATAAGATGAAAGGCCTTGGCCGAGGCCTCCGAGAT
CCTGGAAGGTCGGGTCCGAGAGTACGAGGGTCGCTTGACGGCACTCACAC
GGGAGAATGATTATCTCCGCAAGGACTATGGCGCCGAGATCGAGCGCATG
GAGGCCGAGCGCGTGGCCACGCGCGACCGTGTTTCAAACCTGGAGGCCTC
CCTCTCCAGAGCGGAGTTTCGGGCTGACGAGCAGCGGGAGGCGCTCGAGA
GGGAGCTGGCCTTAATGGCAGGCGAGCTGGACCGGCGTTCGGAGGAGCTC
GCGGCGGCGACCGCAACGACGGATGGGTTGAGAGGCGCCATCGATTCGAT
CAAGGCGAAAGCGGAAGCTCAGGAGGCAGCGCAAAAGGCTTTTGTGGCCG
CAGCCGAGATGCAGAGGAGGGAGCAGGAGGAGGAGGAGCGGGCCGTGGCG
GAGGAAAATGCACGCGCTTTGGAGAACGATACGGAGGATAGGGAAGAGGC
GACGGCGAGGGCGTTACAGAAAAGCGAGATAGTAAAGGAGAAAGATGAGA
AAAAAGCCGAGCGGGGGGTGATGCAGAAGAATCGGGGCGTGAGGGCGCCC
ACGAGAGAGAAGAACGCACGAGAGCAAGCGCGACCCAGGGCCGCGCGGAC
GAAGTCAAAAGCGGCGTCACCGGCGGCATCAGAATCAGAGCAACCGCGGA
AACCTGCTCCTGCTGCTCGTGCTGGTACCGAAATGCCTCAGGTGGCGACC
GCTGGGACTGGGTCTGGAACTGCGGCACGGGGGTCTAGAGCGGAAAATAC
TCTGCCGAAGTCCAAGTCAGGGTTGATGAAGCTCACCGTGAAGAACTTGC
GGGAGCATTGCAAGGAGGCGGGCGTGCCAACGACGGGAACGAAGGCGGAT
CTCGTCAAGCGACTTTTGGAATCTCTCGGTGTCGACATGATAAGATGA
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