mRNA_H-elongata_contig165273.4109.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig165273.4109.1
Unique NamemRNA_H-elongata_contig165273.4109.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig165273.4109.1 vs. uniprot
Match: A0A6H5KSI8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSI8_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 5.050e-35
Identity = 64/97 (65.98%), Postives = 77/97 (79.38%), Query Frame = 1 
Query:    1 AFPFVSTYVVDNLKLEKVDYNIAASNADAGHDLWACWHDNRLKVPFWSNVAKDIALIQPSSAFMERVFSILRACLDEGQETCYSNRIRASVLLKYDR 291
             FPFV+T +V  L +EK  Y+ AA+  D+G DLWA WHDNR ++P W NVAKD+ALIQPSSAFMERVFS+LRAC+DE QE C S+RI AS LLKY+R
Sbjct:  412 VFPFVTTAMVHELVVEKDLYSTAAAGTDSGCDLWAFWHDNRPELPAWYNVAKDVALIQPSSAFMERVFSLLRACMDERQEQCLSDRITASTLLKYNR 508
[Close]
BLAST of mRNA_H-elongata_contig165273.4109.1 vs. uniprot
Match: A0A6H5JW81_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW81_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 1.310e-32
Identity = 61/96 (63.54%), Postives = 72/96 (75.00%), Query Frame = 1 
Query:    1 AFPFVSTYVVDNLKLEKVDYNIAASNADAGHDLWACWHDNRLKVPFWSNVAKDIALIQPSSAFMERVFSILRACLDEGQETCYSNRIRASVLLKYD 288
              PFV+  VV  L  E   YN+AA+  DAG DLWA WHDNRLK+  W NVAKD+ALIQPSSAFMERVFS+LRAC+D+ QE C  +RI A+ LLKY+
Sbjct:  303 VLPFVTPTVVAALVEEMDAYNVAAAETDAGCDLWAFWHDNRLKLSAWYNVAKDVALIQPSSAFMERVFSVLRACVDDRQEHCLLDRIEAAALLKYN 398
[Close]
BLAST of mRNA_H-elongata_contig165273.4109.1 vs. uniprot
Match: A0A6H5KPF8_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPF8_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 2.370e-32
Identity = 62/99 (62.63%), Postives = 72/99 (72.73%), Query Frame = 1 
Query:    1 AFPFVSTYVVDNLKLEKVDYNIAASNADAGHDLWACWHDNRLKVPFWSNVAKDIALIQPSSAFMERVFSILRACLDEGQETCYSNRIRASVLLKYDRER 297
              PFV+  VV  L  E   YN+AA+  DAG DLWA WHDNRLK+  W  VAKDIALIQPSSAFMERVFS+LRAC+D+ QE C  +RI A+ LLKY+  R
Sbjct:   54 VLPFVTPTVVAALVEEMDAYNVAAAETDAGCDLWAFWHDNRLKLSAWYKVAKDIALIQPSSAFMERVFSVLRACVDDRQEHCLLDRIEAAALLKYNSRR 152
[Close]
BLAST of mRNA_H-elongata_contig165273.4109.1 vs. uniprot
Match: A0A6H5JIR3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIR3_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 5.480e-30
Identity = 62/100 (62.00%), Postives = 72/100 (72.00%), Query Frame = 1 
Query:    4 FPFVSTYVVDNLKLEKVDYNIAASNADAGHDLWACWHDNRLKVPF--WSNVAKDIALIQPSSAFMERVFSILRACLDEGQETCYSNRIRASVLLKYDRER 297
            FPFV+   V  LK +  DYNIAAS  D G+DLW+ WHDNR K     W  VAKDI L+QPSSAFMERVFSILRAC+D  QE  +S+R+ AS LLKY+R R
Sbjct:  656 FPFVTENDVARLKDQMDDYNIAASGVDTGYDLWSFWHDNRHKSSLCHWYGVAKDIVLLQPSSAFMERVFSILRACMDARQEKSFSDRVAASALLKYNRGR 755
[Close]
BLAST of mRNA_H-elongata_contig165273.4109.1 vs. uniprot
Match: A0A6H5K4E0_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4E0_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 1.280e-28
Identity = 52/99 (52.53%), Postives = 66/99 (66.67%), Query Frame = 1 
Query:    1 AFPFVSTYVVDNLKLEKVDYNIAASNADAGHDLWACWHDNRLKVPFWSNVAKDIALIQPSSAFMERVFSILRACLDEGQETCYSNRIRASVLLKYDRER 297
             FPF+S   VD L  EK DY +AA   D  +D W  W D++ K+P W  V  DIAL+QPSSAFMERVFS + +CLD  Q +C S+RI A+ L+KY+R R
Sbjct:   27 VFPFISEEQVDKLLTEKDDYYVAARVTDRDYDFWQFWQDHKEKLPTWFAVVLDIALVQPSSAFMERVFSTVHSCLDSSQNSCLSDRIMAAALIKYNRGR 125
[Close]
BLAST of mRNA_H-elongata_contig165273.4109.1 vs. uniprot
Match: A0A6H5JEX4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEX4_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 8.930e-27
Identity = 54/99 (54.55%), Postives = 69/99 (69.70%), Query Frame = 1 
Query:    1 AFPFVSTYVVDNLKLEKVDYNIAASNADAGHDLWACWHDNRLKVPFWSNVAKDIALIQPSSAFMERVFSILRACLDEGQETCYSNRIRASVLLKYDRER 297
              PFV   +V  L  EK D+ +AAS+ +A +   A W+DN+ K+P W  +  D+AL+QPSSAFMERVFSILR C +E QE  YS+RI ASVLLKY+R R
Sbjct:   57 VLPFVKKKMVRGLLKEKEDFYMAASDTEAEYGHMAFWNDNKKKLPTWHALVLDVALLQPSSAFMERVFSILRCCFNERQEHVYSDRICASVLLKYNRGR 155
[Close]
BLAST of mRNA_H-elongata_contig165273.4109.1 vs. uniprot
Match: A0A6H5JZH8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZH8_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 4.770e-25
Identity = 51/99 (51.52%), Postives = 65/99 (65.66%), Query Frame = 1 
Query:    1 AFPFVSTYVVDNLKLEKVDYNIAASNADAGHDLWACWHDNRLKVPFWSNVAKDIALIQPSSAFMERVFSILRACLDEGQETCYSNRIRASVLLKYDRER 297
             FPFV   ++D L  EK D+ +AA++ D  +D    W DN+  +P W  +  D+ L+QPSSAFMERVFSILR C  E QE+ YS+RI AS LLKY R R
Sbjct:  293 VFPFVDDDMMDGLLKEKNDFYVAATDTDTDYDNMTFWSDNKKNLPTWHELVLDVVLLQPSSAFMERVFSILRCCFSERQESVYSDRICASALLKYSRGR 391
[Close]
BLAST of mRNA_H-elongata_contig165273.4109.1 vs. uniprot
Match: A0A6H5KCX4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCX4_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 5.580e-25
Identity = 52/99 (52.53%), Postives = 65/99 (65.66%), Query Frame = 1 
Query:    1 AFPFVSTYVVDNLKLEKVDYNIAASNADAGHDLWACWHDNRLKVPFWSNVAKDIALIQPSSAFMERVFSILRACLDEGQETCYSNRIRASVLLKYDRER 297
              PFV + +V  L  EK DY +AAS+ D  +   A W DN  ++P W  +  D+AL+QPSSAFMERVFSIL  C +E QE  YS+RI AS LLKY+R R
Sbjct:   57 VLPFVKSKMVKGLLKEKEDYYMAASDTDIEYGHMAFWKDNEKRLPTWHALVLDVALLQPSSAFMERVFSILPCCFNERQEHVYSDRICASALLKYNRGR 155
[Close]
BLAST of mRNA_H-elongata_contig165273.4109.1 vs. uniprot
Match: A0A6H5JD81_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD81_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 1.390e-24
Identity = 54/99 (54.55%), Postives = 69/99 (69.70%), Query Frame = 1 
Query:    1 AFPFVSTYVVDNLKLEKVDYNIAASNADAGHDLWACWHDNRLKVPFWSNVAKDIALIQPSSAFMERVFSILRACLDEGQETCYSNRIRASVLLKYDRER 297
              PFV   +V  L  EK D+ +AAS+ +A +   A W+DN+ K+P W  +  D+AL+QPSSAFMERVFSILR C +E QE  YS+RI ASVLLKY+R R
Sbjct:  585 VLPFVKKKMVRGLLKEKEDFYMAASDTEAEYGHMAFWNDNKKKLPTWHALVLDVALLQPSSAFMERVFSILRCCFNERQEHVYSDRICASVLLKYNRGR 683
[Close]
BLAST of mRNA_H-elongata_contig165273.4109.1 vs. uniprot
Match: A0A6H5KTX0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTX0_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 1.400e-24
Identity = 54/99 (54.55%), Postives = 69/99 (69.70%), Query Frame = 1 
Query:    1 AFPFVSTYVVDNLKLEKVDYNIAASNADAGHDLWACWHDNRLKVPFWSNVAKDIALIQPSSAFMERVFSILRACLDEGQETCYSNRIRASVLLKYDRER 297
              PFV   +V  L  EK D+ +AAS+ +A +   A W+DN+ K+P W  +  D+AL+QPSSAFMERVFSILR C +E QE  YS+RI ASVLLKY+R R
Sbjct:  668 VLPFVKKKMVRGLLKEKEDFYMAASDTEAEYGHMAFWNDNKKKLPTWHALVLDVALLQPSSAFMERVFSILRCCFNERQEHVYSDRICASVLLKYNRGR 766
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig165273.4109.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
A0A6H5KSI8_9PHAE5.050e-3565.98Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JW81_9PHAE1.310e-3263.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPF8_9PHAE2.370e-3262.63Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5JIR3_9PHAE5.480e-3062.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4E0_9PHAE1.280e-2852.53Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JEX4_9PHAE8.930e-2754.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZH8_9PHAE4.770e-2551.52Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCX4_9PHAE5.580e-2552.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JD81_9PHAE1.390e-2454.55Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KTX0_9PHAE1.400e-2454.55Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig165273contigH-elongata_contig165273:389..691 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size303
Cds size303
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929967.270818-CDS-H-elongata_contig165273:388..6911622929967.270818-CDS-H-elongata_contig165273:388..691Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig165273 389..691 -
1691679227.660471-CDS-H-elongata_contig165273:388..6911691679227.660471-CDS-H-elongata_contig165273:388..691Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig165273 389..691 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig165273.4109.1prot_H-elongata_contig165273.4109.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig165273 389..691 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig165273.4109.1

>prot_H-elongata_contig165273.4109.1 ID=prot_H-elongata_contig165273.4109.1|Name=mRNA_H-elongata_contig165273.4109.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=101bp
AFPFVSTYVVDNLKLEKVDYNIAASNADAGHDLWACWHDNRLKVPFWSNV
AKDIALIQPSSAFMERVFSILRACLDEGQETCYSNRIRASVLLKYDRERK
*
back to top

mRNA from alignment at H-elongata_contig165273:389..691-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig165273.4109.1 ID=mRNA_H-elongata_contig165273.4109.1|Name=mRNA_H-elongata_contig165273.4109.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=303bp|location=Sequence derived from alignment at H-elongata_contig165273:389..691- (Himanthalia elongata Himel1 dioecious)
GCATTTCCGTTCGTAAGCACTTACGTCGTCGACAACCTCAAGCTAGAAAA
AGTCGACTACAACATCGCGGCGTCTAATGCTGATGCTGGGCACGACCTGT
GGGCTTGTTGGCATGACAACAGGCTGAAGGTTCCTTTTTGGTCCAATGTA
GCGAAGGACATAGCGCTGATTCAGCCATCTTCTGCTTTCATGGAGCGAGT
ATTTTCTATCCTTCGCGCGTGCTTGGACGAGGGGCAAGAGACTTGCTATA
GCAACCGAATTAGGGCGTCGGTCCTCCTCAAGTACGACAGGGAAAGAAAA
TAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig165273:389..691-

>mRNA_H-elongata_contig165273.4109.1 ID=mRNA_H-elongata_contig165273.4109.1|Name=mRNA_H-elongata_contig165273.4109.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=606bp|location=Sequence derived from alignment at H-elongata_contig165273:389..691- (Himanthalia elongata Himel1 dioecious)
GCATTTCCGTTCGTAAGCACTTACGTCGTCGACAACCTCAAGCTAGAAAA
AGTCGACTACAACATCGCGGCGTCTAATGCTGATGCTGGGCACGACCTGT
GGGCTTGTTGGCATGACAACAGGCTGAAGGTTCCTTTTTGGTCCAATGTA
GCGAAGGACATAGCGCTGATTCAGCCATCTTCTGCTTTCATGGAGCGAGT
ATTTTCTATCCTTCGCGCGTGCTTGGACGAGGGGCAAGAGACTTGCTATA
GCAACCGAATTAGGGCGTCGGTCCTCCTCAAGTACGACAGGGAAAGAAAA
TAAGCATTTCCGTTCGTAAGCACTTACGTCGTCGACAACCTCAAGCTAGA
AAAAGTCGACTACAACATCGCGGCGTCTAATGCTGATGCTGGGCACGACC
TGTGGGCTTGTTGGCATGACAACAGGCTGAAGGTTCCTTTTTGGTCCAAT
GTAGCGAAGGACATAGCGCTGATTCAGCCATCTTCTGCTTTCATGGAGCG
AGTATTTTCTATCCTTCGCGCGTGCTTGGACGAGGGGCAAGAGACTTGCT
ATAGCAACCGAATTAGGGCGTCGGTCCTCCTCAAGTACGACAGGGAAAGA
AAATAA
back to top