mRNA_H-elongata_contig165109.4103.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig165109.4103.1
Unique NamemRNA_H-elongata_contig165109.4103.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig165109.4103.1 vs. uniprot
Match: A0A2R4QQ95_9PHAE (NADH dehydrogenase subunit 11 n=6 Tax=Fucus TaxID=3011 RepID=A0A2R4QQ95_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 5.150e-16
Identity = 41/48 (85.42%), Postives = 43/48 (89.58%), Query Frame = 1
Query:    1 MCLVEVANAPKPQASCASPFMPNMRIFTITNMALVQKAQEFVMELLLL 144
            MCLVEV NAPKPQASCA PFMPNMRI+T  N ALV+KAQEFVMELLLL
Sbjct:   47 MCLVEVGNAPKPQASCALPFMPNMRIYT--NTALVRKAQEFVMELLLL 92          
BLAST of mRNA_H-elongata_contig165109.4103.1 vs. uniprot
Match: A0A0G2RLB7_TUROR (NADH dehydrogenase subunit 11 n=24 Tax=Sargassaceae TaxID=3014 RepID=A0A0G2RLB7_TUROR)

HSP 1 Score: 74.7 bits (182), Expect = 2.740e-15
Identity = 40/48 (83.33%), Postives = 41/48 (85.42%), Query Frame = 1
Query:    1 MCLVEVANAPKPQASCASPFMPNMRIFTITNMALVQKAQEFVMELLLL 144
            MCLVEV N+PKPQASCA PFMPNMRIFT  N ALV KAQEFVME LLL
Sbjct:   47 MCLVEVGNSPKPQASCALPFMPNMRIFT--NTALVHKAQEFVMEFLLL 92          
BLAST of mRNA_H-elongata_contig165109.4103.1 vs. uniprot
Match: A0A8F0K0N1_9PHAE (NADH dehydrogenase subunit 11 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0K0N1_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 5.620e-15
Identity = 39/48 (81.25%), Postives = 43/48 (89.58%), Query Frame = 1
Query:    1 MCLVEVANAPKPQASCASPFMPNMRIFTITNMALVQKAQEFVMELLLL 144
            MCLVEV NAPKPQASCA PFMPN++IFT  N ALV+KAQEFVMEL+LL
Sbjct:   47 MCLVEVNNAPKPQASCALPFMPNLKIFT--NSALVRKAQEFVMELMLL 92          
BLAST of mRNA_H-elongata_contig165109.4103.1 vs. uniprot
Match: Q6TUC9_FUCSE (NADH dehydrogenase subunit 11 (Fragment) n=2 Tax=Fucus serratus TaxID=87148 RepID=Q6TUC9_FUCSE)

HSP 1 Score: 68.9 bits (167), Expect = 1.280e-14
Identity = 38/46 (82.61%), Postives = 40/46 (86.96%), Query Frame = 1
Query:    7 LVEVANAPKPQASCASPFMPNMRIFTITNMALVQKAQEFVMELLLL 144
            LVEV NAPKPQASCA PFMPNM I+T  N ALV+KAQEFVMELLLL
Sbjct:    1 LVEVGNAPKPQASCALPFMPNMGIYT--NTALVRKAQEFVMELLLL 44          
BLAST of mRNA_H-elongata_contig165109.4103.1 vs. uniprot
Match: F8UWN5_9PHAE (NADH dehydrogenase subunit 11 n=73 Tax=Phaeophyceae TaxID=2870 RepID=F8UWN5_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 4.410e-14
Identity = 38/48 (79.17%), Postives = 43/48 (89.58%), Query Frame = 1
Query:    1 MCLVEVANAPKPQASCASPFMPNMRIFTITNMALVQKAQEFVMELLLL 144
            MCLVEV+N+PKPQASCA PF+PN+RIFT  N ALV+KAQE VMELLLL
Sbjct:   47 MCLVEVSNSPKPQASCALPFLPNLRIFT--NTALVRKAQESVMELLLL 92          
BLAST of mRNA_H-elongata_contig165109.4103.1 vs. uniprot
Match: E6ZET3_ECTSI (NADH dehydrogenase subunit 11 n=3 Tax=Ectocarpales TaxID=2877 RepID=E6ZET3_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 3.330e-13
Identity = 37/48 (77.08%), Postives = 42/48 (87.50%), Query Frame = 1
Query:    1 MCLVEVANAPKPQASCASPFMPNMRIFTITNMALVQKAQEFVMELLLL 144
            MCLVEV+ +PKPQASCA PF+PN+RIFT  N ALV+KAQE VMELLLL
Sbjct:   47 MCLVEVSKSPKPQASCALPFLPNLRIFT--NTALVRKAQESVMELLLL 92          
BLAST of mRNA_H-elongata_contig165109.4103.1 vs. uniprot
Match: A0A8E8U4G1_9PHAE (Nad11 n=1 Tax=Phaeophyceae sp. TaxID=2249243 RepID=A0A8E8U4G1_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 6.670e-13
Identity = 36/48 (75.00%), Postives = 42/48 (87.50%), Query Frame = 1
Query:    1 MCLVEVANAPKPQASCASPFMPNMRIFTITNMALVQKAQEFVMELLLL 144
            MCLVEV N+PKPQASCA PF+P +RIFT +  ALV+KAQEFVMEL+LL
Sbjct:   47 MCLVEVNNSPKPQASCALPFLPGLRIFTTS--ALVRKAQEFVMELILL 92          
BLAST of mRNA_H-elongata_contig165109.4103.1 vs. uniprot
Match: Q9XNR7_PYLLI (NADH dehydrogenase subunit 11 n=6 Tax=Ectocarpales TaxID=2877 RepID=Q9XNR7_PYLLI)

HSP 1 Score: 67.0 bits (162), Expect = 2.660e-12
Identity = 36/48 (75.00%), Postives = 41/48 (85.42%), Query Frame = 1
Query:    1 MCLVEVANAPKPQASCASPFMPNMRIFTITNMALVQKAQEFVMELLLL 144
            MCLVEV+ +PKPQASCA PF+P +RIFT  N ALV+KAQE VMELLLL
Sbjct:   47 MCLVEVSKSPKPQASCALPFLPGLRIFT--NTALVRKAQESVMELLLL 92          
BLAST of mRNA_H-elongata_contig165109.4103.1 vs. uniprot
Match: A0A4Y5T8Q6_9PHAE (NADH dehydrogenase subunit 11 n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A4Y5T8Q6_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 1.770e-11
Identity = 35/48 (72.92%), Postives = 39/48 (81.25%), Query Frame = 1
Query:    1 MCLVEVANAPKPQASCASPFMPNMRIFTITNMALVQKAQEFVMELLLL 144
            MCLVEV N+PKPQ SCA PF+PNM IFT  N ALV+KA+E VME LLL
Sbjct:   46 MCLVEVGNSPKPQVSCALPFVPNMSIFT--NSALVKKAREGVMEFLLL 91          
BLAST of mRNA_H-elongata_contig165109.4103.1 vs. uniprot
Match: A0A7S6UA29_9STRA (Nad11 n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6UA29_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 7.260e-11
Identity = 33/48 (68.75%), Postives = 39/48 (81.25%), Query Frame = 1
Query:    1 MCLVEVANAPKPQASCASPFMPNMRIFTITNMALVQKAQEFVMELLLL 144
            MCLVE+AN+PKPQ SCA P MPNM+IFT  N  LV+KA+E V+E LLL
Sbjct:   46 MCLVEIANSPKPQVSCAMPVMPNMQIFT--NTPLVKKAREAVLEFLLL 91          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig165109.4103.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
A0A2R4QQ95_9PHAE5.150e-1685.42NADH dehydrogenase subunit 11 n=6 Tax=Fucus TaxID=... [more]
A0A0G2RLB7_TUROR2.740e-1583.33NADH dehydrogenase subunit 11 n=24 Tax=Sargassacea... [more]
A0A8F0K0N1_9PHAE5.620e-1581.25NADH dehydrogenase subunit 11 n=1 Tax=Desmarestia ... [more]
Q6TUC9_FUCSE1.280e-1482.61NADH dehydrogenase subunit 11 (Fragment) n=2 Tax=F... [more]
F8UWN5_9PHAE4.410e-1479.17NADH dehydrogenase subunit 11 n=73 Tax=Phaeophycea... [more]
E6ZET3_ECTSI3.330e-1377.08NADH dehydrogenase subunit 11 n=3 Tax=Ectocarpales... [more]
A0A8E8U4G1_9PHAE6.670e-1375.00Nad11 n=1 Tax=Phaeophyceae sp. TaxID=2249243 RepID... [more]
Q9XNR7_PYLLI2.660e-1275.00NADH dehydrogenase subunit 11 n=6 Tax=Ectocarpales... [more]
A0A4Y5T8Q6_9PHAE1.770e-1172.92NADH dehydrogenase subunit 11 n=1 Tax=Dictyopteris... [more]
A0A7S6UA29_9STRA7.260e-1168.75Nad11 n=1 Tax=Schizocladia ischiensis TaxID=196139... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig165109contigH-elongata_contig165109:1134..1277 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size144
Cds size144
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929966.7304525-CDS-H-elongata_contig165109:1133..12771622929966.7304525-CDS-H-elongata_contig165109:1133..1277Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig165109 1134..1277 +
1691679227.4276972-CDS-H-elongata_contig165109:1133..12771691679227.4276972-CDS-H-elongata_contig165109:1133..1277Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig165109 1134..1277 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig165109.4103.1prot_H-elongata_contig165109.4103.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig165109 1134..1277 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig165109.4103.1

>prot_H-elongata_contig165109.4103.1 ID=prot_H-elongata_contig165109.4103.1|Name=mRNA_H-elongata_contig165109.4103.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=48bp
MCLVEVANAPKPQASCASPFMPNMRIFTITNMALVQKAQEFVMELLLL
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mRNA from alignment at H-elongata_contig165109:1134..1277+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig165109.4103.1 ID=mRNA_H-elongata_contig165109.4103.1|Name=mRNA_H-elongata_contig165109.4103.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=144bp|location=Sequence derived from alignment at H-elongata_contig165109:1134..1277+ (Himanthalia elongata Himel1 dioecious)
ATGTGTCTAGTGGAAGTTGCGAATGCTCCAAAACCTCAAGCTTCTTGCGC TTCACCTTTTATGCCTAATATGAGAATTTTTACTATTACTAATATGGCTT TAGTTCAAAAAGCTCAAGAATTTGTTATGGAATTACTTTTGTTG
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Coding sequence (CDS) from alignment at H-elongata_contig165109:1134..1277+

>mRNA_H-elongata_contig165109.4103.1 ID=mRNA_H-elongata_contig165109.4103.1|Name=mRNA_H-elongata_contig165109.4103.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=288bp|location=Sequence derived from alignment at H-elongata_contig165109:1134..1277+ (Himanthalia elongata Himel1 dioecious)
ATGTGTCTAGTGGAAGTTGCGAATGCTCCAAAACCTCAAGCTTCTTGCGC
TTCACCTTTTATGCCTAATATGAGAATTTTTACTATTACTAATATGGCTT
TAGTTCAAAAAGCTCAAGAATTTGTTATGGAATTACTTTTGTTGATGTGT
CTAGTGGAAGTTGCGAATGCTCCAAAACCTCAAGCTTCTTGCGCTTCACC
TTTTATGCCTAATATGAGAATTTTTACTATTACTAATATGGCTTTAGTTC
AAAAAGCTCAAGAATTTGTTATGGAATTACTTTTGTTG
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