mRNA_H-elongata_contig16506.4101.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig16506.4101.1
Unique NamemRNA_H-elongata_contig16506.4101.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig16506.4101.1 vs. uniprot
Match: A0A6H5L0J7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0J7_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 2.010e-23
Identity = 50/89 (56.18%), Postives = 64/89 (71.91%), Query Frame = 1 
Query:   31 DVVRGVAEYVGMDQFLFFAAVSRGWRQAWGDRPTITAAITGQTSVHQLLYSFDSGLRRSSRLCANIARLGNLKLLRLARAKHCPWDSST 297
            D+V  VAE+V  +Q+LFFA+VSRGWR  WG RPT+T A+T  TSV QL  SF+ GLRR++ +C  +A LG L LLR ARA  C W+ +T
Sbjct:    8 DIVSTVAEFVDDNQYLFFASVSRGWRDVWGKRPTVTKALTADTSVPQLSLSFECGLRRTAAVCETVAGLGRLDLLRRARAMGCQWNENT 96
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BLAST of mRNA_H-elongata_contig16506.4101.1 vs. uniprot
Match: D7FMS7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMS7_ECTSI)

HSP 1 Score: 108 bits (270), Expect = 4.300e-23
Identity = 50/89 (56.18%), Postives = 64/89 (71.91%), Query Frame = 1 
Query:   31 DVVRGVAEYVGMDQFLFFAAVSRGWRQAWGDRPTITAAITGQTSVHQLLYSFDSGLRRSSRLCANIARLGNLKLLRLARAKHCPWDSST 297
            D+V  V E+V  +Q+LFFA+VSRGWR  WG RPT+T A+T  TSV QL  SF+ GLRR++ +C  +A LG L LLR ARA  CPW+ +T
Sbjct:   10 DIVSTVGEFVDDNQYLFFASVSRGWRDVWGKRPTVTKALTADTSVSQLSLSFECGLRRTAAVCETVAGLGRLDLLRRARAMGCPWNENT 98
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BLAST of mRNA_H-elongata_contig16506.4101.1 vs. uniprot
Match: A0A6H5KPZ6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KPZ6_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 9.770e-22
Identity = 52/97 (53.61%), Postives = 65/97 (67.01%), Query Frame = 1 
Query:   25 NQDVVRGVAEYVGMDQFLFFAAVSRGWRQAWGDRPTITAAITGQTSVHQLLYSFDSGLRRSS-RLCANIARLGNLKLLRLARAKHCPWDSSTSEKAA 312
            N D++R +  +V   QFLFFA VSR WR+AWG RP +T+ +T  +SV QL YSF+ GL R    LCA IARLGNL+LLR AR   C W+  T  +AA
Sbjct:   60 NVDLLRSIVRFVAEKQFLFFAPVSRAWREAWGCRPAVTSWVTEDSSVSQLRYSFERGLPRDRPELCAAIARLGNLELLRSARGSGCAWNGLTFSEAA 156
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BLAST of mRNA_H-elongata_contig16506.4101.1 vs. uniprot
Match: A0A6H5L0K8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0K8_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 2.170e-21
Identity = 49/94 (52.13%), Postives = 65/94 (69.15%), Query Frame = 1 
Query:   16 VLTNQDVVRGVAEYVGMDQFLFFAAVSRGWRQAWGDRPTITAAITGQTSVHQLLYSFDSGLRRSSRLCANIARLGNLKLLRLARAKHCPWDSST 297
            V  N  ++  +AE+V  +Q LFFA+VSRGWR  WG RPT+T A+T  TSV QL  SF+ GLRR++ +C  +A LG L LL+ ARA  CPW+ +T
Sbjct:   21 VTANVYLLSYLAEFVDDNQHLFFASVSRGWRDVWGKRPTVTKALTADTSVPQLSLSFECGLRRTAAVCETVAGLGRLDLLQRARAMGCPWNENT 114
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BLAST of mRNA_H-elongata_contig16506.4101.1 vs. uniprot
Match: D7FH49_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH49_ECTSI)

HSP 1 Score: 100 bits (250), Expect = 4.910e-20
Identity = 55/106 (51.89%), Postives = 67/106 (63.21%), Query Frame = 1 
Query:    1 METEKV-LTNQDVVRGVAEYVGMDQFLFFAAVSRGWRQAWGDRPTITAAITGQTSVHQLLYSFDSGLRRSS-RLCANIARLGNLKLLRLARAKHCPWDSSTSEKAA 312
            + TE V +TN D+V G+A++V   QFLFFAAVSR WR AWG+R T+T+ +T  T+  QL YSF  GL R     C   AR GNL LLR A  + CPW  S S  AA
Sbjct:   13 VRTENVAMTNMDIVHGLAQFVLDKQFLFFAAVSRSWRDAWGERATVTSWVTPHTTPFQLQYSFACGLARDGVDWCLTTARAGNLDLLRWATEQGCPWTRSLSAAAA 118
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BLAST of mRNA_H-elongata_contig16506.4101.1 vs. uniprot
Match: A0A6H5JM75_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM75_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 4.930e-18
Identity = 49/99 (49.49%), Postives = 59/99 (59.60%), Query Frame = 1 
Query:   19 LTNQDVVRGVAEYVGMDQFLFFAAVSRGWRQAWGDRPTITAAITGQTSVHQLLYSFDSGLRRSSRLCANIARLGNLKLLRLARAKH-CPWDSSTSEKAA 312
            L   D+V  + E+VG +Q++FFA VSR WR AW  RPT T A T  T V QL  SF  GL   S +C +IA LG L LL  AR +H CPWD  T   A+
Sbjct:    5 LMQPDIVFRLMEFVGGEQYIFFAGVSRTWRDAWEGRPTTTRAFTADTGVPQLSQSFKCGLAPRSTVCRDIAALGRLDLLVSAREQHECPWDEETCSCAS 103
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BLAST of mRNA_H-elongata_contig16506.4101.1 vs. uniprot
Match: D7G8W5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8W5_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 8.610e-18
Identity = 47/88 (53.41%), Postives = 57/88 (64.77%), Query Frame = 1 
Query:   52 EYVGMDQFLFFAAVSRGWRQAWGDRPTITAAITGQTSVHQLLYSFDSGLRRSSRLCANIARLGNLKLLRLARAKH-CPWDSSTSEKAA 312
            E+VG +Q+LFFA VSR WR AW  RPT T A+T  T V QL  SF+ GL R S +C +IA LG L LL  AR ++ CPWD  T   A+
Sbjct:    2 EFVGGEQYLFFAGVSRTWRDAWEGRPTTTRAVTADTGVPQLSQSFECGLARRSTVCQDIAALGRLDLLVSAREEYECPWDEDTCSYAS 89
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BLAST of mRNA_H-elongata_contig16506.4101.1 vs. uniprot
Match: D7G8V2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8V2_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 7.150e-15
Identity = 40/94 (42.55%), Postives = 56/94 (59.57%), Query Frame = 1 
Query:   16 VLTNQDVVRGVAEYVGMDQFLFFAAVSRGWRQAWGDRPTITAAITGQTSVHQLLYSFDSGLRRSSRLCANIARLGNLKLLRLARAKHCPWDSST 297
            +    DV   + E+V  +QFLFFA V R W++AWG RP  T A+T  T+V QL  +F  GL   + +C ++A+LG L LL+ AR   C W+  T
Sbjct:    5 LFAQSDVASCLVEFVDYEQFLFFAGVCRAWKEAWGQRPPTTRAVTEDTTVAQLSQNFQCGLSLIADVCTSVAKLGRLDLLQCARRHGCAWNEVT 98
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BLAST of mRNA_H-elongata_contig16506.4101.1 vs. uniprot
Match: D8LGC4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGC4_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 6.500e-11
Identity = 37/81 (45.68%), Postives = 55/81 (67.90%), Query Frame = 1 
Query:   46 VAEYVGMDQFLFFAAVSRGWRQAWGDRPTITAAITGQTSVHQLLYSFDSGLRR-----SSRLCANIARLGNLKLLRLARAK 273
            +AE+VG  Q+LFFA VS+ WR AWG RPT+T+  T  TS+ QL +S D GL++     + R+ +++AR G++ LL +A  K
Sbjct:    1 MAEFVGDKQYLFFAPVSQDWRSAWGGRPTVTSYATPYTSLSQLRWSLDCGLKKEKGVQNGRVLSSLARTGDVGLLEVAHKK 81
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16506.4101.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5L0J7_9PHAE2.010e-2356.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FMS7_ECTSI4.300e-2356.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KPZ6_9PHAE9.770e-2253.61Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5L0K8_9PHAE2.170e-2152.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FH49_ECTSI4.910e-2051.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JM75_9PHAE4.930e-1849.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G8W5_ECTSI8.610e-1853.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G8V2_ECTSI7.150e-1542.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LGC4_ECTSI6.500e-1145.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16506contigH-elongata_contig16506:5563..6678 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.8
Seed ortholog evalue3.7e-13
Seed eggNOG ortholog2880.D7FJY0
KEGG koko:K06052
KEGG Pathwayko01522,ko04330,ko04371,ko04658,ko04668,ko05165,ko05200,ko05224,map01522,map04330,map04371,map04658,map04668,map05165,map05200,map05224
EggNOG OGs2AMK4@1,2RZCC@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04090
Hectar predicted targeting categoryother localisation
Exons1
Model size1116
Cds size1116
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929966.6128101-CDS-H-elongata_contig16506:5562..66781622929966.6128101-CDS-H-elongata_contig16506:5562..6678Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16506 5563..6678 -
1691679227.3963108-CDS-H-elongata_contig16506:5562..66781691679227.3963108-CDS-H-elongata_contig16506:5562..6678Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16506 5563..6678 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16506.4101.1prot_H-elongata_contig16506.4101.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig16506 5563..6678 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig16506.4101.1

>prot_H-elongata_contig16506.4101.1 ID=prot_H-elongata_contig16506.4101.1|Name=mRNA_H-elongata_contig16506.4101.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=372bp
METEKVLTNQDVVRGVAEYVGMDQFLFFAAVSRGWRQAWGDRPTITAAIT
GQTSVHQLLYSFDSGLRRSSRLCANIARLGNLKLLRLARAKHCPWDSSTS
EKAARGGHLDVLQWAHKNGCPWNEYTCSEAAEGGHLHVLVWVRANRCPWN
GSTTQAAARMGHLRILQWARAMGCEWGKWTCVGAARAGHLDVIKWALTDG
CPMAGPLCRGAAEGGHLSILQWARENGCSWDASTCSGAANGGHLEVLQFA
RSNGCPWDELTCSAAAGRGYLEILRWARANGCPWNAQTCARAASGGYLEV
LQWARRNGCSWDASAMSGAAANRHFRVLRWLRENGCPWDVFTLRMAALSG
HHDVIKWARINGCAMETGARW*
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mRNA from alignment at H-elongata_contig16506:5563..6678-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig16506.4101.1 ID=mRNA_H-elongata_contig16506.4101.1|Name=mRNA_H-elongata_contig16506.4101.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1116bp|location=Sequence derived from alignment at H-elongata_contig16506:5563..6678- (Himanthalia elongata Himel1 dioecious)
ATGGAGACAGAAAAGGTTCTGACCAATCAGGACGTCGTCCGTGGCGTCGC
TGAGTACGTAGGTATGGACCAATTCCTCTTCTTCGCGGCGGTGTCCAGGG
GATGGAGACAAGCCTGGGGGGACCGCCCCACGATCACGGCAGCCATCACC
GGCCAAACCTCCGTCCACCAACTTCTCTACAGCTTTGACAGCGGACTGAG
GCGCAGTAGCAGACTGTGCGCCAACATCGCACGCCTCGGTAATTTGAAGC
TCCTGCGACTCGCAAGGGCCAAACATTGTCCGTGGGACTCGTCCACCTCG
GAGAAGGCTGCGAGAGGGGGACACCTGGACGTCTTGCAGTGGGCCCATAA
AAACGGTTGCCCGTGGAACGAGTACACGTGTAGCGAAGCGGCCGAGGGCG
GCCACCTACACGTCCTCGTCTGGGTGCGCGCCAACCGCTGCCCTTGGAAC
GGCTCTACGACGCAAGCGGCTGCCAGGATGGGCCACCTGCGGATTCTCCA
GTGGGCACGCGCGATGGGTTGCGAGTGGGGCAAGTGGACGTGCGTTGGCG
CAGCGAGGGCCGGGCACTTGGACGTCATCAAATGGGCGCTCACGGACGGG
TGCCCCATGGCGGGCCCACTATGTCGGGGAGCGGCAGAGGGTGGACACTT
AAGCATTCTCCAGTGGGCAAGGGAGAACGGATGCTCCTGGGACGCTTCCA
CCTGCAGTGGCGCGGCCAACGGTGGCCACCTAGAGGTACTGCAGTTTGCG
CGGAGTAACGGGTGTCCCTGGGATGAGTTGACGTGCTCCGCGGCGGCGGG
AAGGGGATACCTGGAGATCCTTCGGTGGGCCCGGGCCAACGGCTGTCCGT
GGAATGCGCAAACATGCGCGAGAGCTGCAAGCGGAGGGTATCTTGAGGTG
TTGCAGTGGGCACGCCGAAATGGTTGCAGTTGGGACGCGTCGGCCATGAG
CGGGGCGGCGGCGAACAGGCACTTTCGTGTCCTTCGGTGGCTGAGAGAGA
ACGGATGTCCCTGGGACGTATTCACGCTAAGGATGGCCGCGCTGAGTGGG
CATCATGACGTGATCAAGTGGGCGCGAATCAACGGCTGTGCCATGGAAAC
AGGTGCGAGATGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig16506:5563..6678-

>mRNA_H-elongata_contig16506.4101.1 ID=mRNA_H-elongata_contig16506.4101.1|Name=mRNA_H-elongata_contig16506.4101.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2232bp|location=Sequence derived from alignment at H-elongata_contig16506:5563..6678- (Himanthalia elongata Himel1 dioecious)
ATGGAGACAGAAAAGGTTCTGACCAATCAGGACGTCGTCCGTGGCGTCGC
TGAGTACGTAGGTATGGACCAATTCCTCTTCTTCGCGGCGGTGTCCAGGG
GATGGAGACAAGCCTGGGGGGACCGCCCCACGATCACGGCAGCCATCACC
GGCCAAACCTCCGTCCACCAACTTCTCTACAGCTTTGACAGCGGACTGAG
GCGCAGTAGCAGACTGTGCGCCAACATCGCACGCCTCGGTAATTTGAAGC
TCCTGCGACTCGCAAGGGCCAAACATTGTCCGTGGGACTCGTCCACCTCG
GAGAAGGCTGCGAGAGGGGGACACCTGGACGTCTTGCAGTGGGCCCATAA
AAACGGTTGCCCGTGGAACGAGTACACGTGTAGCGAAGCGGCCGAGGGCG
GCCACCTACACGTCCTCGTCTGGGTGCGCGCCAACCGCTGCCCTTGGAAC
GGCTCTACGACGCAAGCGGCTGCCAGGATGGGCCACCTGCGGATTCTCCA
GTGGGCACGCGCGATGGGTTGCGAGTGGGGCAAGTGGACGTGCGTTGGCG
CAGCGAGGGCCGGGCACTTGGACGTCATCAAATGGGCGCTCACGGACGGG
TGCCCCATGGCGGGCCCACTATGTCGGGGAGCGGCAGAGGGTGGACACTT
AAGCATTCTCCAGTGGGCAAGGGAGAACGGATGCTCCTGGGACGCTTCCA
CCTGCAGTGGCGCGGCCAACGGTGGCCACCTAGAGGTACTGCAGTTTGCG
CGGAGTAACGGGTGTCCCTGGGATGAGTTGACGTGCTCCGCGGCGGCGGG
AAGGGGATACCTGGAGATCCTTCGGTGGGCCCGGGCCAACGGCTGTCCGT
GGAATGCGCAAACATGCGCGAGAGCTGCAAGCGGAGGGTATCTTGAGGTG
TTGCAGTGGGCACGCCGAAATGGTTGCAGTTGGGACGCGTCGGCCATGAG
CGGGGCGGCGGCGAACAGGCACTTTCGTGTCCTTCGGTGGCTGAGAGAGA
ACGGATGTCCCTGGGACGTATTCACGCTAAGGATGGCCGCGCTGAGTGGG
CATCATGACGTGATCAAGTGGGCGCGAATCAACGGCTGTGCCATGGAAAC
AGGTGCGAGATGGTGAATGGAGACAGAAAAGGTTCTGACCAATCAGGACG
TCGTCCGTGGCGTCGCTGAGTACGTAGGTATGGACCAATTCCTCTTCTTC
GCGGCGGTGTCCAGGGGATGGAGACAAGCCTGGGGGGACCGCCCCACGAT
CACGGCAGCCATCACCGGCCAAACCTCCGTCCACCAACTTCTCTACAGCT
TTGACAGCGGACTGAGGCGCAGTAGCAGACTGTGCGCCAACATCGCACGC
CTCGGTAATTTGAAGCTCCTGCGACTCGCAAGGGCCAAACATTGTCCGTG
GGACTCGTCCACCTCGGAGAAGGCTGCGAGAGGGGGACACCTGGACGTCT
TGCAGTGGGCCCATAAAAACGGTTGCCCGTGGAACGAGTACACGTGTAGC
GAAGCGGCCGAGGGCGGCCACCTACACGTCCTCGTCTGGGTGCGCGCCAA
CCGCTGCCCTTGGAACGGCTCTACGACGCAAGCGGCTGCCAGGATGGGCC
ACCTGCGGATTCTCCAGTGGGCACGCGCGATGGGTTGCGAGTGGGGCAAG
TGGACGTGCGTTGGCGCAGCGAGGGCCGGGCACTTGGACGTCATCAAATG
GGCGCTCACGGACGGGTGCCCCATGGCGGGCCCACTATGTCGGGGAGCGG
CAGAGGGTGGACACTTAAGCATTCTCCAGTGGGCAAGGGAGAACGGATGC
TCCTGGGACGCTTCCACCTGCAGTGGCGCGGCCAACGGTGGCCACCTAGA
GGTACTGCAGTTTGCGCGGAGTAACGGGTGTCCCTGGGATGAGTTGACGT
GCTCCGCGGCGGCGGGAAGGGGATACCTGGAGATCCTTCGGTGGGCCCGG
GCCAACGGCTGTCCGTGGAATGCGCAAACATGCGCGAGAGCTGCAAGCGG
AGGGTATCTTGAGGTGTTGCAGTGGGCACGCCGAAATGGTTGCAGTTGGG
ACGCGTCGGCCATGAGCGGGGCGGCGGCGAACAGGCACTTTCGTGTCCTT
CGGTGGCTGAGAGAGAACGGATGTCCCTGGGACGTATTCACGCTAAGGAT
GGCCGCGCTGAGTGGGCATCATGACGTGATCAAGTGGGCGCGAATCAACG
GCTGTGCCATGGAAACAGGTGCGAGATGGTGA
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