mRNA_H-elongata_contig1650.4097.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig1650.4097.1 vs. uniprot
Match: D7FJ06_ECTSI (Epimerase/dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ06_ECTSI) HSP 1 Score: 353 bits (905), Expect = 1.080e-120 Identity = 180/228 (78.95%), Postives = 203/228 (89.04%), Query Frame = 1
Query: 1 LRMVCKRVFVAGGAKGVGRVLIDKLVEQGSDVVALVRRKDAKEELDAINGVEAVVCDALDLKGVEGVLDGCDAAVTTLGGAPGGDEEKRVDYTGNRNIIESAGILGITRLVLVSSVGCGSSRDAISDGVYQVLEKALKAKTMAENILLKYYTNSDWTIIRPGELKNNEATGTAILTEDIKTAGVINREDVANLVVQALNSPRTVRKILTAIDPSKDSRYESLAQPEPF 684
LRM +VFVAGGAKGVGR +IDKLV+QGS+VVALVRR+DAK+EL+AI GV AVVCDALDLKGVE VLDGCDAA+TTLGGAP GDE KRVDY GNRN+IESAGILGITR+V+V+SVGCGSSR+AISD VYQVLEKALKAKT+AEN+LLKYYTNS+WTIIRPG LK++ ATGTAILTED K AGVINR DVA+L VQALNSP TVRKILTA+DP+ S Y+S +P F
Sbjct: 44 LRMAYGKVFVAGGAKGVGRAVIDKLVDQGSEVVALVRREDAKDELEAIKGVSAVVCDALDLKGVEAVLDGCDAAITTLGGAPEGDESKRVDYAGNRNVIESAGILGITRVVMVTSVGCGSSREAISDQVYQVLEKALKAKTLAENMLLKYYTNSEWTIIRPGGLKSDAATGTAILTEDTKAAGVINRADVADLAVQALNSPSTVRKILTAVDPAVQSSYDSAEKPAAF 271
BLAST of mRNA_H-elongata_contig1650.4097.1 vs. uniprot
Match: A0A835Z825_9STRA (Epimerase/dehydrogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z825_9STRA) HSP 1 Score: 269 bits (688), Expect = 7.130e-88 Identity = 142/228 (62.28%), Postives = 176/228 (77.19%), Query Frame = 1
Query: 1 LRMVCKRVFVAGGAKGVGRVLIDKLVEQGSDVVALVRRKDAKEELDAINGVEAVVCDALDLKGVEGVLDGCDAAVTTLGGAPGGDEEKRVDYTGNRNIIESAGILGITRLVLVSSVGCGSSRDAISDGVYQVLEKALKAKTMAENILLKYYTNSDWTIIRPGELKNNEATGTAILTEDIKTAGVINREDVANLVVQALNSPRTVRKILTAIDPSKDSRYESLAQPEPF 684
L M +VFVAGG+ GVGR ++++LV +G VVA+VRR+DA EEL+AI GV AV+ DALDLKGVEG LDGCDAA+TTLGG+ G E RVDY GNRN+IESAGILG+TR++LV+SVGCG SR AISD VY LEKAL AKT AE +L KYYTN+ WTIIRPG L+ E TG AILTE+ AG+I R DVA++VV+AL++ T +K+ TA+DPS S + ++ E F
Sbjct: 36 LSMAYNKVFVAGGSSGVGREVVNQLVSKGKQVVAIVRREDALEELNAIEGVTAVMVDALDLKGVEGALDGCDAAITTLGGSSG---ENRVDYEGNRNVIESAGILGVTRVILVTSVGCGDSRGAISDQVYTSLEKALVAKTKAEKMLQKYYTNAFWTIIRPGGLQTAEGTGKAILTENKTIAGIIRRADVADVVVRALDNDGTHKKVFTAVDPSIPSSFGDASKAEAF 260
BLAST of mRNA_H-elongata_contig1650.4097.1 vs. uniprot
Match: A0A7S3L6R6_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L6R6_9STRA) HSP 1 Score: 267 bits (682), Expect = 5.990e-87 Identity = 137/223 (61.43%), Postives = 176/223 (78.92%), Query Frame = 1
Query: 16 KRVFVAGGAKGVGRVLIDKLVEQGSDVVALVRRKDAKEELDAINGVEAVVCDALDLKGVEGVLDGCDAAVTTLGGAPGGDEEKRVDYTGNRNIIESAGILGITRLVLVSSVGCGSSRDAISDGVYQVLEKALKAKTMAENILLKYYTNSDWTIIRPGELKNNEATGTAILTEDIKTAGVINREDVANLVVQALNSPRTVRKILTAIDPSKDSRYESLAQPEPF 684
K VFVAGG+KGVGR++IDKL+EQGS VVALVR+++ +L++I GV A+V DA D K VE +DGCDAA+TTLGG+ D R+DY GN N+IESAGILG+ R++LV+SVGCGSS++A + V++ L++ L AK AEN+L+KYYTNS+W+IIRPG LK+ ATG AILTED KT G I+REDVA+LVV+ L SP+T RKILTAIDPS +S + A+ E F
Sbjct: 40 KNVFVAGGSKGVGRLVIDKLLEQGSKVVALVRKEEVAADLNSIEGVTAIVGDAFDQKTVENAMDGCDAAITTLGGSTQ-DTGARIDYAGNSNVIESAGILGVQRIILVTSVGCGSSKEAAPEAVFEALKEVLLAKEKAENVLIKYYTNSNWSIIRPGGLKSEPATGNAILTEDNKTIGTIHREDVASLVVRCLESPKTERKILTAIDPSIESAVATGAEVEAF 261
BLAST of mRNA_H-elongata_contig1650.4097.1 vs. uniprot
Match: B7FVE3_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FVE3_PHATC) HSP 1 Score: 263 bits (671), Expect = 3.190e-85 Identity = 136/223 (60.99%), Postives = 170/223 (76.23%), Query Frame = 1
Query: 16 KRVFVAGGAKGVGRVLIDKLVEQGSDVVALVRRKDAKEELDAINGVEAVVCDALDLKGVEGVLDGCDAAVTTLGGAPGGDEEKRVDYTGNRNIIESAGILGITRLVLVSSVGCGSSRDAISDGVYQVLEKALKAKTMAENILLKYYTNSDWTIIRPGELKNNEATGTAILTEDIKTAGVINREDVANLVVQALNSPRTVRKILTAIDPSKDSRYESLAQPEPF 684
K+VFVAGG +GVGR ++D+L+ QGS+VVALVR +DA +EL+AI GV A+ DA + K VE +DGCDAA+TTLGGA D KRVDY GN N+IESAGILG+TR++LV+SVGCGSS++A V++ L++ L AK AEN+L+KYYTN +WTIIRPG LK+ ATG AILTED + G I+REDVA L ++ALNS T RK+LTAIDPS DS Q E F
Sbjct: 44 KKVFVAGGTRGVGRCIVDQLLGQGSEVVALVRSEDALKELNAIEGVTAIRGDAFEQKAVENAMDGCDAAITTLGGATS-DGGKRVDYDGNSNVIESAGILGVTRVILVTSVGCGSSKEAAPPNVFEALKEVLTAKEKAENVLIKYYTNMNWTIIRPGGLKSEPATGKAILTEDTRAIGTIHREDVAALAIKALNSSNTERKVLTAIDPSIDSAVSDGKQVEAF 265
BLAST of mRNA_H-elongata_contig1650.4097.1 vs. uniprot
Match: A0A7S2V5P0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5P0_9STRA) HSP 1 Score: 257 bits (656), Expect = 7.300e-83 Identity = 129/213 (60.56%), Postives = 165/213 (77.46%), Query Frame = 1
Query: 1 LRMVCKRVFVAGGAKGVGRVLIDKLVEQGSDVVALVRRKDAKEELDAINGVEAVVCDALDLKGVEGVLDGCDAAVTTLGGAPGGDEEKRVDYTGNRNIIESAGILGITRLVLVSSVGCGSSRDAISDGVYQVLEKALKAKTMAENILLKYYTNSDWTIIRPGELKNNEATGTAILTEDIKTAGVINREDVANLVVQALNSPRTVRKILTAIDP 639
L M K+VFVAG AKGVGR ++++LV + +VVA VRR++AK+EL + GV A++ DAL K VEG +DGCDAAVTTLG AP ++ +VDY GN N+IE+AGILG+TR +LV+SVGCG S++A+S Y+ LE ALKAK AE +L KYYTNSDWT+IRPG L N EAT A+LTE+ GVINR DVA+LVV+AL+S +T RK+LTA+DP
Sbjct: 61 LEMAYKKVFVAGAAKGVGRQIVEQLVAKDVEVVAFVRREEAKQELGGLKGVTAILGDALVQKDVEGAMDGCDAAVTTLGSAPTDEQRWKVDYDGNVNVIEAAGILGVTRCILVTSVGCGDSKEAVSPDAYEKLENALKAKEKAERVLTKYYTNSDWTVIRPGGLMNGEATSAAVLTENKMACGVINRADVASLVVKALDSQKTFRKVLTAVDP 273
BLAST of mRNA_H-elongata_contig1650.4097.1 vs. uniprot
Match: A0A6U3NUE1_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3NUE1_9STRA) HSP 1 Score: 253 bits (647), Expect = 1.990e-81 Identity = 124/209 (59.33%), Postives = 164/209 (78.47%), Query Frame = 1
Query: 16 KRVFVAGGAKGVGRVLIDKLVEQGSDVVALVRRKDAKEELDAINGVEAVVCDALDLKGVEGVLDGCDAAVTTLGGAPGGDEEKRVDYTGNRNIIESAGILGITRLVLVSSVGCGSSRDAISDGVYQVLEKALKAKTMAENILLKYYTNSDWTIIRPGELKNNEATGTAILTEDIKTAGVINREDVANLVVQALNSPRTVRKILTAIDPS 642
K+VFVAGG+KGVGR ++DKL+E GS+VVALVR ++A +EL A+ GV A++ DA + K VEG +DGCDAA+TTLG G++ KRVDY GN N+IE+AGILG+TR++L++S+GCGSS++A V++VL+ L AK AEN+L+KYYTN +WTIIRPG LK+ TG AILTED G I+REDVA L V+AL S +T RK+L+A+D S
Sbjct: 52 KKVFVAGGSKGVGRHIVDKLIEDGSEVVALVRSQEAIDELSALEGVTAILGDAFEYKNVEGAMDGCDAAITTLGQGTAGEDGKRVDYEGNSNVIEAAGILGVTRVILITSIGCGSSKEAAPPSVFEVLKDVLAAKERAENVLIKYYTNMNWTIIRPGGLKSEPGTGEAILTEDAMAIGSIHREDVAALAVKALTSSKTERKVLSAVDQS 260
BLAST of mRNA_H-elongata_contig1650.4097.1 vs. uniprot
Match: A0A7S2HK64_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HK64_9STRA) HSP 1 Score: 253 bits (647), Expect = 2.190e-81 Identity = 123/209 (58.85%), Postives = 167/209 (79.90%), Query Frame = 1
Query: 16 KRVFVAGGAKGVGRVLIDKLVEQGSDVVALVRRKDAKEELDAINGVEAVVCDALDLKGVEGVLDGCDAAVTTLGGAPGGDEEKRVDYTGNRNIIESAGILGITRLVLVSSVGCGSSRDAISDGVYQVLEKALKAKTMAENILLKYYTNSDWTIIRPGELKNNEATGTAILTEDIKTAGVINREDVANLVVQALNSPRTVRKILTAIDPS 642
K+VFVAGG+KGVGR+++DKL+E GS+VVALVR ++A +EL AI+GV ++ DA + K VE +DGCDAA+TTLG ++ KRVDY GN N+IE+AGILG+TR++LV+S+GCGSS++A V++VL+ L AK AEN+L+KYYTN++WTI+RPG LK+ ATG AILTED G I+REDVA+L+V+AL S +T RK+L+A+D S
Sbjct: 55 KKVFVAGGSKGVGRLIVDKLIEDGSEVVALVRSQEAVDELGAIDGVTPILGDAFEYKNVENAMDGCDAAITTLGQGSATEDGKRVDYEGNSNVIEAAGILGVTRVILVTSIGCGSSKEAAPPSVFEVLKDVLAAKERAENVLIKYYTNTNWTIVRPGGLKSEPATGEAILTEDAMAIGSIHREDVASLIVKALTSSKTERKVLSAVDQS 263
BLAST of mRNA_H-elongata_contig1650.4097.1 vs. uniprot
Match: A0A7S2UDM5_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UDM5_9STRA) HSP 1 Score: 253 bits (646), Expect = 3.000e-81 Identity = 126/207 (60.87%), Postives = 166/207 (80.19%), Query Frame = 1
Query: 19 RVFVAGGAKGVGRVLIDKLVEQGSDVVALVRRKDAKEELDAINGVEAVVCDALDLKGVEGVLDGCDAAVTTLGGAPGGDEEKRVDYTGNRNIIESAGILGITRLVLVSSVGCGSSRDAISDGVYQVLEKALKAKTMAENILLKYYTNSDWTIIRPGELKNNEATGTAILTEDIKTAGVINREDVANLVVQALNSPRTVRKILTAIDP 639
+VFVAGG+KGVGR+++DKLV G+ VVALVR ++A EL+A++GV AV+ DA D K VEG +DGCDAA++TLGG + ++RVDY GN N+IE+AGILG+TR+VL++S+GCGSS++A V++VL+ L AK AENIL+KYYTN++WTIIRPG LK+ ATG AILTED G I+REDVA L +QAL SP+T +KIL+A+DP
Sbjct: 55 KVFVAGGSKGVGRLVVDKLVGSGTGVVALVRSEEAAAELNALDGVTAVIGDAFDYKAVEGAMDGCDAAMSTLGGGTVEEGKQRVDYEGNSNVIEAAGILGVTRVVLITSIGCGSSKEAAPPSVFEVLKDVLSAKERAENILIKYYTNTNWTIIRPGGLKSEPATGKAILTEDNMAIGSIHREDVAALAIQALTSPKTKQKILSAVDP 261
BLAST of mRNA_H-elongata_contig1650.4097.1 vs. uniprot
Match: A0A7S0AIJ9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AIJ9_9STRA) HSP 1 Score: 247 bits (631), Expect = 5.110e-79 Identity = 126/209 (60.29%), Postives = 162/209 (77.51%), Query Frame = 1
Query: 19 RVFVAGGAKGVGRVLIDKLVEQGSDVVALVRRKDAKEELDAINGVEAVVCDALDLKGVEGVLDGCDAAVTTLGGA--PGGDEEKRVDYTGNRNIIESAGILGITRLVLVSSVGCGSSRDAISDGVYQVLEKALKAKTMAENILLKYYTNSDWTIIRPGELKNNEATGTAILTEDIKTAGVINREDVANLVVQALNSPRTVRKILTAIDP 639
+VFVAGG++GVGR ++D L+ GS+VVALVR +A+ EL A++GV DA D K VEG +DGCDAA+TT+G P G+ KRVDY GN N+IE+AGILG+TR+VLV+S+GCGSS++A V++VL+ L AK AEN+L+KYYTN +WTI+RPG LK+ ATGTAILTE+ G I+REDVA+LVVQALNS T RKIL+A+DP
Sbjct: 59 KVFVAGGSRGVGRAVVDGLLSAGSEVVALVRTDEAEAELSALDGVTVARGDAFDYKAVEGAMDGCDAAITTMGQGTDPVGENGKRVDYVGNNNVIEAAGILGVTRVVLVTSIGCGSSKEAAPPSVFEVLKDVLAAKERAENVLIKYYTNMNWTIVRPGGLKSEPATGTAILTENNLAIGSIHREDVADLVVQALNSGNTERKILSAVDP 267
BLAST of mRNA_H-elongata_contig1650.4097.1 vs. uniprot
Match: A0A1E7FCE8_9STRA (NAD(P)-binding protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FCE8_9STRA) HSP 1 Score: 249 bits (635), Expect = 5.710e-79 Identity = 124/209 (59.33%), Postives = 166/209 (79.43%), Query Frame = 1
Query: 16 KRVFVAGGAKGVGRVLIDKLVEQGSDVVALVRRKDAKEELDAINGVEAVVCDALDLKGVEGVLDGCDAAVTTLGGAPGGDEEKRVDYTGNRNIIESAGILGITRLVLVSSVGCGSSRDAISDGVYQVLEKALKAKTMAENILLKYYTNSDWTIIRPGELKNNEATGTAILTEDIKTAGVINREDVANLVVQALNSPRTVRKILTAIDPS 642
K++FVAGG+KGVG ++ KL E+G++VVALVR + +K+ELD I+GV A++ DA D KGVE +DGCDAA+TTLGG G ++RVDY GN N+IESAGILG+ R++L++S+GCGSS++A V++VL+ L+AK AENIL+ YYTNS+W+IIRPG L + TG AILTED KT G I+REDVA+LV++ L+S T RKIL+A+DPS
Sbjct: 103 KKIFVAGGSKGVGHAIVTKLSERGTEVVALVRSEKSKKELDKIDGVTAILGDAFDQKGVENAMDGCDAAITTLGGTTG---DRRVDYEGNNNVIESAGILGVQRIILLTSIGCGSSKEAAPPAVFEVLKDVLEAKEKAENILMDYYTNSNWSIIRPGGLVSEVMTGQAILTEDNKTIGSIHREDVADLVIKVLDSTNTERKILSAVDPS 308 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1650.4097.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig1650.4097.1 >prot_H-elongata_contig1650.4097.1 ID=prot_H-elongata_contig1650.4097.1|Name=mRNA_H-elongata_contig1650.4097.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=229bp MVCKRVFVAGGAKGVGRVLIDKLVEQGSDVVALVRRKDAKEELDAINGVEback to top mRNA from alignment at H-elongata_contig1650:251..1692+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig1650.4097.1 ID=mRNA_H-elongata_contig1650.4097.1|Name=mRNA_H-elongata_contig1650.4097.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1442bp|location=Sequence derived from alignment at H-elongata_contig1650:251..1692+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig1650:251..1692+ >mRNA_H-elongata_contig1650.4097.1 ID=mRNA_H-elongata_contig1650.4097.1|Name=mRNA_H-elongata_contig1650.4097.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1374bp|location=Sequence derived from alignment at H-elongata_contig1650:251..1692+ (Himanthalia elongata Himel1 dioecious)back to top |