prot_H-elongata_contig16496.4094.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig16496.4094.1
Unique Nameprot_H-elongata_contig16496.4094.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length178
Homology
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BLAST of mRNA_H-elongata_contig16496.4094.1 vs. uniprot
Match: D7G9B5_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9B5_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 2.620e-17
Identity = 42/82 (51.22%), Postives = 60/82 (73.17%), Query Frame = 0 
Query:    1 IDQQEALLTVAHNHCLYAFVKAGSDNCD----YGKKIEIMLISCRADTYIYVFAMKALGSAGLWETAVTLLSELRDIERVAP 78
            +D++  LLTVAHNHC++AF+KAG +       +  +     I+C+ADTY YV AMKA+G+AG WE AV+LL+ELR++E V+P
Sbjct:  588 LDRRNELLTVAHNHCMFAFIKAGRETIPPPPPFPPRDPPSTITCKADTYTYVTAMKAVGAAGQWEIAVSLLAELRELEGVSP 669
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BLAST of mRNA_H-elongata_contig16496.4094.1 vs. uniprot
Match: A0A6H5KZI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZI4_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 3.580e-7
Identity = 30/77 (38.96%), Postives = 47/77 (61.04%), Query Frame = 0 
Query:    1 IDQQEALLT---VAHNHCLYAFVKAGSDNCDYGKKIEIMLISCRADTYIYVFAMKALGSAGLWETAVTLLSELRDIE 74
            ++  E++L+    ++ H + +  K G D        E+     +ADTY YV AMKA+G+AG WE AV+LL+ELR++E
Sbjct:  539 VEHDESVLSPDIFSYTHLMSSLQKLGRDRACLSALYEMRARGIKADTYTYVTAMKAVGAAGQWEIAVSLLAELRELE 615
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16496.4094.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G9B5_ECTSI2.620e-1751.22PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KZI4_9PHAE3.580e-738.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 103..178
e-value: 1.3E-10
score: 43.2
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 9..100
e-value: 2.7E-7
score: 32.2
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 134..171
e-value: 0.0039
score: 17.2

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16496contigH-elongata_contig16496:759..7246 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16496.4094.1mRNA_H-elongata_contig16496.4094.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig16496 759..7246 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig16496.4094.1 ID=prot_H-elongata_contig16496.4094.1|Name=mRNA_H-elongata_contig16496.4094.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=178bp
IDQQEALLTVAHNHCLYAFVKAGSDNCDYGKKIEIMLISCRADTYIYVFA
MKALGSAGLWETAVTLLSELRDIERVAPNVYVYTAAISACSTAGRICFFT
LHINSLFAVGGESSSSSFSFLIYVCSRWEEALSLESDMRRRGIKANAYTV
TSCISALARGGEWERAAQVTDTLSRLGL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat