mRNA_H-elongata_contig16496.4094.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig16496.4094.1
Unique NamemRNA_H-elongata_contig16496.4094.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig16496.4094.1 vs. uniprot
Match: D7G9B5_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9B5_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 2.620e-17
Identity = 42/82 (51.22%), Postives = 60/82 (73.17%), Query Frame = 1 
Query:    1 IDQQEALLTVAHNHCLYAFVKAGSDNCD----YGKKIEIMLISCRADTYIYVFAMKALGSAGLWETAVTLLSELRDIERVAP 234
            +D++  LLTVAHNHC++AF+KAG +       +  +     I+C+ADTY YV AMKA+G+AG WE AV+LL+ELR++E V+P
Sbjct:  588 LDRRNELLTVAHNHCMFAFIKAGRETIPPPPPFPPRDPPSTITCKADTYTYVTAMKAVGAAGQWEIAVSLLAELRELEGVSP 669
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BLAST of mRNA_H-elongata_contig16496.4094.1 vs. uniprot
Match: A0A6H5KZI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZI4_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 3.580e-7
Identity = 30/77 (38.96%), Postives = 47/77 (61.04%), Query Frame = 1 
Query:    1 IDQQEALLT---VAHNHCLYAFVKAGSDNCDYGKKIEIMLISCRADTYIYVFAMKALGSAGLWETAVTLLSELRDIE 222
            ++  E++L+    ++ H + +  K G D        E+     +ADTY YV AMKA+G+AG WE AV+LL+ELR++E
Sbjct:  539 VEHDESVLSPDIFSYTHLMSSLQKLGRDRACLSALYEMRARGIKADTYTYVTAMKAVGAAGQWEIAVSLLAELRELE 615
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16496.4094.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G9B5_ECTSI2.620e-1751.22PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KZI4_9PHAE3.580e-738.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16496contigH-elongata_contig16496:759..7246 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score88.6
Seed ortholog evalue3.2e-15
Seed eggNOG ortholog2880.D7G9B5
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size534
Cds size534
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16496.4094.1prot_H-elongata_contig16496.4094.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig16496 759..7246 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929965.005756-CDS-H-elongata_contig16496:758..8291622929965.005756-CDS-H-elongata_contig16496:758..829Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16496 759..829 +
1691679226.5252674-CDS-H-elongata_contig16496:758..8291691679226.5252674-CDS-H-elongata_contig16496:758..829Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16496 759..829 +
1622929965.024315-CDS-H-elongata_contig16496:4353..44051622929965.024315-CDS-H-elongata_contig16496:4353..4405Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16496 4354..4405 +
1691679226.5339262-CDS-H-elongata_contig16496:4353..44051691679226.5339262-CDS-H-elongata_contig16496:4353..4405Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16496 4354..4405 +
1622929965.0412083-CDS-H-elongata_contig16496:6249..64101622929965.0412083-CDS-H-elongata_contig16496:6249..6410Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16496 6250..6410 +
1691679226.5411613-CDS-H-elongata_contig16496:6249..64101691679226.5411613-CDS-H-elongata_contig16496:6249..6410Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16496 6250..6410 +
1622929965.0533555-CDS-H-elongata_contig16496:6996..72461622929965.0533555-CDS-H-elongata_contig16496:6996..7246Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16496 6997..7246 +
1691679226.5485735-CDS-H-elongata_contig16496:6996..72461691679226.5485735-CDS-H-elongata_contig16496:6996..7246Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16496 6997..7246 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig16496.4094.1

>prot_H-elongata_contig16496.4094.1 ID=prot_H-elongata_contig16496.4094.1|Name=mRNA_H-elongata_contig16496.4094.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=178bp
IDQQEALLTVAHNHCLYAFVKAGSDNCDYGKKIEIMLISCRADTYIYVFA
MKALGSAGLWETAVTLLSELRDIERVAPNVYVYTAAISACSTAGRICFFT
LHINSLFAVGGESSSSSFSFLIYVCSRWEEALSLESDMRRRGIKANAYTV
TSCISALARGGEWERAAQVTDTLSRLGL
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mRNA from alignment at H-elongata_contig16496:759..7246+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig16496.4094.1 ID=mRNA_H-elongata_contig16496.4094.1|Name=mRNA_H-elongata_contig16496.4094.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=6488bp|location=Sequence derived from alignment at H-elongata_contig16496:759..7246+ (Himanthalia elongata Himel1 dioecious)
ATCGACCAGCAGGAGGCGTTACTGACTGTAGCCCACAACCACTGTTTGTA
TGCCTTCGTCAAGGCCGGAAGGTGAATGTGTGTGTGTGTGTGTGCGAGAG
TGTATCGTTGATTTTGTTATTTAAAGGGGAAAAAAAGCAAAAAAAACAAA
AAAAAAACAAAGTGAAACGAAGCTAAAATTTAGCGAAAGAAAAATAAGTA
AATATATACATACAGCATAAACTTTTTATGTCCGCGGTTATATCTTTATC
CCACCCCGATCATGGCTTCTTTAGGCCCCACTCATATATTGTTTAGTCCC
CGATCATATATTTATTTAACCCCCCCCCCTTGAACTCATTCCAACCCTCC
GAACATCCACGCCTTCTCAGCACCATGAGAGGTGCAGTCTAGGGGACCAA
CTATCGTCAGGTTAGAATGTGTACAATACTACCCTTGAGTACAAAATCTT
CCACATGATAAATCATAGTAAGTTCATTGGTACGTGAGCTATGGAATTAT
TAGACTCCTGTAATACCTCTGAGTGAGACCCTGATCATACCTTATCTATA
GCATACCTTGTTCTGACCTATATCATGCCTTACTTAGACTTCTTGGACCC
CATCATTAGTCCCCGATCATACCTTAATTCGGCCATACCTTATTTTGATC
TCTATCATGCCTTATTTAGACTCCTTGAACCCCATTATCCCTTAAATAGT
CCCTCATACCTTAATCAGACCATACCTTATTTTGACCTCCATCATGCATG
CTTTACTTTGACTCCTTGGACCCTCTTCATTCCGGAATAAGTCCCCGATC
ATAGCTTAATTAGCCCATACCTTATTTTGACGTCTATCATGCCTTATTTT
GACTCCTTGGACCCTCTTCATTCCGGAATTAGTCCCCATCATACCTTAAT
TAGACCATACCTTATTTTGACCTCCATCATGCATGCTTTACTTTGACTCC
TTGGACCCTCTTCATTCCGGAATTAGTCCCCGATCGCACCTTAATTAGGC
TATACCTTATTTTGACCTCTATCATGCCTTATTTTGACTCCTTGGACCCC
ATCATACCTGAAATAGGCCCGGATCGTGCCTTAATTGGGCCATACCTTGT
TTTGACCTGCATCATGCCTTCATTAAACTCCTTGGACCCCATTATACCTG
AAACAGTCCCCGATCATACCTTATTTTGACCCAAAAAATCACAAGAGGAA
GAACACTGAGTATACTTATGAGTATATAGTCTCTTTTCTGAAAAAATAAA
TTGAAATAAAACCGGTTCTAGTCATCCATTTTGCTGAAGTTGTACGGGTT
ATAGACGTATAACGTATAACGTATGGCCAAAGGATGGTTCTAATTAATGT
TCCGGGAAAATGAGAAAGGTAGAGTACAATTTCAAAACGAATAAGGTAAT
CAGGGTACATTATATTATATCGACTACGTCTATATACTATATATATATCC
CATCCCTCCGAACACCATAAGAGGAGATGCAGCCCAGGCGAACAATTATC
GTCAGGTTCGAATATGTAAACTAATACCTTTGAGCACAAAATCGTCACAT
ACACTTGATTATTCATGTTCCTCAAGAGTAAGCCTCGTCATCTGGTCCTT
TTTCTGGAAACCATATGGTTTCAACCAAACCCTCGGAGCATCCACGACTT
GTTAGCACCGTGAGAGGTGCAGTCCACGGGACCTTTAAATGTAATCAACC
CATATATCTCCCCGGTTAGTTAACGCCTCCCTACGATCCTGTGGTTCTAA
AGGATATATGATGTTATCTATATATGATCAACCCATACCTCTCCCCGTTT
AGTTCACGCCTTCATACGATCTTGTGATCCTAAAGGATGTCTTATCTTAT
CTATATAATCAATCCATCTTTCTCCCCGGTGAGTTAACGCCTCCCTACAA
CCCTGTGGTCCTAAACGATGTCTTATTTTATCTATATAATCAACCCATCT
TTCTCCCCGGTTAGTTAACGCCTCCCTACGATTCTGTGGTCCTAAAATAT
TTATTATCTTATCTATCCGATCAACCTATCTCTCTCCCCGGTTAGTTCAC
GCCTCCCTACAAACCTTTCCGAATCAAGGTCACAATGCAAGCCCAACCCA
TGAATGATGGTCGAACTTTACTAATTCGCGTTAAAGAAAAAATAAATAAA
TAAACACATCACCGAGATTCGGTCGATCTTGTGACTGTCTAATTTTCCGC
CGAACAAATTATCTAGGGCCATTTTTCGACCAGGCTCTGTAAAAAAACAA
ACAAACTCAGTTTGTATTACTTGGTAGCTGAAGAATTAAAATACGCGTGG
AGGCAACGCAATACGAAGTACACTGTACTTCTACATGGTATTGTTTTTCG
GCTGATCACATTTTGCCCGTCGTAGCGTCGTTTTTTTTTTTTTTTAAACA
CATTTATGTGCCTCTTAACCCGGTCGGTAGAATCGTTTATCGTCCTGTTG
GCCAATTGTACTCAATCGATCGATCGACCGACCTTACCAAATAAGCCGCG
GCGGTCGCGAGCCCCTGCCGACTAATCAAAGCGCGAGCGACCTACCGACT
CACGAGCCAACCCTATGAATCGAAAACCTTTGTGTGCTGTTCGGGCGCTT
CTCGATCCCTGCCAACCAGCCAACCAATCAAATTAAAATCGCTCCAACGT
CTATAACCGATTTATCAACCAACCGATGAACGCTTCTTGTTTATTTTCGT
CACCGCGATTCGGCGCAGACACGAGGAGGCGGTGGCGCACTTCGACCGTT
ATTTCCGACAGTCTCGCTACTCCGCGGACGAGATATTTTTCGCTTCCGAC
AGTCCCGAGACGCACGCGGAAGGCAACTTGAAGGCTTCCCCGGGGCCGCC
GCCCAACTCGTCATCCCTCCTGGGGTCGTGGAGGGAGAGCTTGTTGCCCC
CCGACACTTTCTCTTACACGCACTTGATGACGTCCCTCGAGAGGCTGGGG
AGGGAGCGGGCCTGCCTCTCCGCGATCCACGAGATGAGGGCGAGGGGAAT
CAAGGTAGGCCGTGTGCATTTGTGTGTAAGTATGTGTGTTTGTGTGGAAC
AGTTGCATGTATATATATATATTATATATATGTGCGTGTATATTTTTATT
TAAAATAATTGAATTGCACATAACCGCGCAATTCGGACCTGTCATGCTAG
TCCTTGTAGGCTACTCTCGCATTAATCCTCCCAATGGGGGATTCAATCAT
AATTGCTTCGAAAACTTCTGATCAGACGTGACGAAGGGGACATACTCTCT
CTCTACAGTTCATAGATACCGATAAGCCCTAAGCGCCTTGCGCTTTCCTT
TTTGCTCCCCTCTATAGTATCGTCCGGCATCTATTGGACCACCGCTCTCC
CGACTACCCTTTTTTTTATCACTGCTACCCAAATCTCCCCCGTTTTCTAC
CGTCTTACGCTTCTTTGACCCTCCTCTCCCATCCCCTCCCCGATCTCGCC
CTTCGCTTCCCGCCCCTGGACTTCGGTCATCGATTTAACGCAACTTTCTC
GTTTGAGCGTTGGATCTTGCGGCTGTGGATGCTGGTTACACGTTGGCGAC
ACTCCCTCTCTCGCGGCTTCGTTCCTACGTATACTACCCGGGGAGTGATA
ATTGTGACTACGGGAAAAAAATAGAAATAATGTTAATTTCATGCAGAGTA
AAATAGGCGTTTCTCTGAAACCTATATATACTGGCTGACCCAGCCCGCCC
CCCAACCCTAACCCTAACCCACACTCACTCACCCACCCATGGGACTCATG
GGGTTCTGATACCTTAATTTGATGGTGGAAACCCCGGGGATGACCCCTTA
TATGTCCCCATAGTCTCAAACTAAACATTTCTCTGTACTACCCCTTCGTG
AAAACAACCGGGTTCTCTCTCCTATCTACCCTCCTCTCCGTTCTCATCCC
CGTTTCCGTTCCCTTTTTCGTCCTTATCCTTATCCTTATCCTCATCCCGT
CCCCGTCTCCGTCTCCGTCCCTGTTCCCGTTAACGTTTCTTCTCTACCGT
CTCTGGGTGCGGTTTCCCCTCGGCACGACACGGTTGAACAGGCTTCGAGT
CTTGCACCCGAAACTCCTGGCTACCTGCAAGCGCCACCTCCCCGTCTGCA
GGGATGATGTCGCGTGCGGAACGACAGCGCCTTGCTGCGCTTCTTCGCCC
CTTCTCGATCCCGCCCCTCACTTCCCGCCCCTGTTTGTTTTTGTTATCTC
CATGATACGACGTTCTCGTTGGAGTGTCGGGTCTTGCGGCTGTGGATGAT
GGTTACCGGTTTGCGTCGCCCCCTCTCTCTCCCATCTACCCCCACCTTCG
TTTTTGTCCTCATTCTCGTCCCTGTTCCCGTTATCCTGGGGCCCGGGTCT
TGCACCCGGAGCTCCTGGCTACCTAGAAGCGCCACCCTCTGTCTGCAGAG
ATGATGCCGCGTGCGGAGTGGCAGCGCCTGCTTGCTGTAAAACGAACGAA
AACATTCACCGGGGACGCGCTATTTCCGTCCCCTCCGCATAGATGCCGGG
GACTCCTCGGAGTGAATCTCCGAGCTGTGCTCCACTCGCCCGATGACCAA
CTTCTTAATCAAGGCATGCACGTCAGAGCCAGCCTCTGTGTGTGTGGTCA
TCCCATATAGCAGAGAGTAAGATGAACCGCATATGGTTGCTTCCTGCTCG
TGGTCAGCTGAACAGGGAAACATTGATTTCTCCTGCCTCCGTTCGCACCT
GATAATTTGGTCTCGCGATACGTGTTTGGCAGTTCTGTCCCGCGCCAGCC
TGTTCATTCTCTCAATCCAGGCTAAATCTTGTGCGTATTCCCGGGATACT
CTCGTTTCTCCCGTTTTTCGCGGTGTCCATCTCTACCGTCAACCGCCATC
GGACCAATTCCTGATTTCATTATGTCACGCAATTGCGTACTGATATCGGT
TGCCACCGAGAGTCCGCCTGCACTGAGCCCGCAGTCCTCAAGGTAGCTTG
AGTAACGGGTGCAGACTATTAAGATAACCCCATGGACCAATTATTTTGCG
CCTATATCTTTCCACACCCACAATTGGTACATTGGACATGTGCGATACAG
TATACCACAGACAATATCGGAGGCGATATGTCCTTGATGGATTATAATGG
CAGCTGTGTCTAGAATGTAGCAGGCCTATCTATGTGCGTTTTTTTTTGTT
TAATTATCAATATATGTATTCGTTTACTAAGTCTTTATTCATTTCATTAC
TATTTATTAATTTCATTGACTATTTTTTAGTGATATTAATTCTTTTATCT
AGTGTTCTCATTATTTTGATTTTGTGCTCATGAGCTTATTCCTATTTTTC
ATTCGTGTATTGGTTCATGTTATTTTTCATCCACGTTCTTTCACCCTACT
TATTCCCTCATTCATGTATTCGTTCATGTGTTTATTCATCCACATTTCTT
CATCTATGTTTCTTAACCCGCATATTCCGTCATTCATGTGTATTCATTCA
TGTATTTCATTCTTACAAATGTTCGTGGTTGCGGCTGGCAGGCGGACACC
TACATCTACGTGTTCGCGATGAAGGCCCTAGGCTCGGCCGGACTGTGGGA
AACTGCCGTAACGCTCCTTTCTGAGCTGAGAGACATCGAGAGGGTTGCCC
CCAACGTTTATGTCTACACAGCCGCCATTTCGGCGTGCTCTACCGCTGGG
AGGTGCACGATGCTATAATAACTGCATGATGAGGGGGTTTTGCGTCTTTA
TTGGTGTATTATGTAGTCCTTATCATGTTATATATAATTTAGTTATTATT
TTATTATATAATATTTTGGTTATCATGTTATATAATCTTGTAGTTATTAT
TTTATTATATAATATTTTAGGTATCATGTTATATACCAGGTAATATTTTA
GTCATCATGTTAAAAATAATATTTTAATTATTATGTTATATAATATTTTA
ATTATCATGTTGTATAATATTTTAGTTATTATGTCATATGTGATGACCAT
ACATTATATTTTTGTTTTTCATGTCATATTATTTTTCCAGTTATTGTGCC
ACATTATATAACAGTTATCACGTTATATTATTTTCTAGTTATCATGCTAT
ATCATGTTACATGTATAATGTTAAGATATTGTATTATAGGCACTGTATTA
TGTTATAAATCGTGTGGTAGGATACTAGGTATACCGTGAAGAAGTTCAAC
CATAGGTTTTCCTTTTTAACCCTTTGGGACTTGATTTCAATTATTATATT
GAATTTAGTGTGTAATAAACATATCGAGTTCAATAGAGGATTTGTTTTTT
CACCCTCCACATCAACTCACTTTTTGCCGTGGGGGGGGAGTCGTCGTCCT
CTTCATTTTCCTTTTTAATTTATGTCTGCTCCAGGTGGGAGGAGGCGCTT
TCCCTGGAGAGCGACATGCGACGAAGAGGCATCAAGGCGAACGCCTACAC
GGTGACGTCATGCATCAGCGCTCTCGCGAGGGGAGGCGAGTGGGAGAGGG
CAGCACAGGTGACGGACACACTGTCGCGACTTGGTTTG
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Coding sequence (CDS) from alignment at H-elongata_contig16496:759..7246+

>mRNA_H-elongata_contig16496.4094.1 ID=mRNA_H-elongata_contig16496.4094.1|Name=mRNA_H-elongata_contig16496.4094.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1068bp|location=Sequence derived from alignment at H-elongata_contig16496:759..7246+ (Himanthalia elongata Himel1 dioecious)
ATCGACCAGCAGGAGGCGTTACTGACTGTAGCCCACAACCACTGTTTGTA
TGCCTTCGTCAAGGCCGGAAGATCGACCAGCAGGAGGCGTTACTGACTGT
AGCCCACAACCACTGTTTGTATGCCTTCGTCAAGGCCGGAAGTGATAATT
GTGACTACGGGAAAAAAATAGAAATAATGTTAATTTCATGCAGATGATAA
TTGTGACTACGGGAAAAAAATAGAAATAATGTTAATTTCATGCAGAGCGG
ACACCTACATCTACGTGTTCGCGATGAAGGCCCTAGGCTCGGCCGGACTG
TGGGAAACTGCCGTAACGCTCCTTTCTGAGCTGAGAGACATCGAGAGGGT
TGCCCCCAACGTTTATGTCTACACAGCCGCCATTTCGGCGTGCTCTACCG
CTGGGAGGCGGACACCTACATCTACGTGTTCGCGATGAAGGCCCTAGGCT
CGGCCGGACTGTGGGAAACTGCCGTAACGCTCCTTTCTGAGCTGAGAGAC
ATCGAGAGGGTTGCCCCCAACGTTTATGTCTACACAGCCGCCATTTCGGC
GTGCTCTACCGCTGGGAGGATTTGTTTTTTCACCCTCCACATCAACTCAC
TTTTTGCCGTGGGGGGGGAGTCGTCGTCCTCTTCATTTTCCTTTTTAATT
TATGTCTGCTCCAGGTGGGAGGAGGCGCTTTCCCTGGAGAGCGACATGCG
ACGAAGAGGCATCAAGGCGAACGCCTACACGGTGACGTCATGCATCAGCG
CTCTCGCGAGGGGAGGCGAGTGGGAGAGGGCAGCACAGGTGACGGACACA
CTGTCGCGACTTGGTTTGGATTTGTTTTTTCACCCTCCACATCAACTCAC
TTTTTGCCGTGGGGGGGGAGTCGTCGTCCTCTTCATTTTCCTTTTTAATT
TATGTCTGCTCCAGGTGGGAGGAGGCGCTTTCCCTGGAGAGCGACATGCG
ACGAAGAGGCATCAAGGCGAACGCCTACACGGTGACGTCATGCATCAGCG
CTCTCGCGAGGGGAGGCGAGTGGGAGAGGGCAGCACAGGTGACGGACACA
CTGTCGCGACTTGGTTTG
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