mRNA_H-elongata_contig164956.4093.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig164956.4093.1
Unique NamemRNA_H-elongata_contig164956.4093.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig164956.4093.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig164956contigH-elongata_contig164956:79..487 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size410
Cds size360
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929964.9239268-CDS-H-elongata_contig164956:78..4381622929964.9239268-CDS-H-elongata_contig164956:78..438Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig164956 79..438 +
1691679226.5098336-CDS-H-elongata_contig164956:78..4381691679226.5098336-CDS-H-elongata_contig164956:78..438Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig164956 79..438 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929964.9550807-UTR-H-elongata_contig164956:438..4871622929964.9550807-UTR-H-elongata_contig164956:438..487Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig164956 439..487 +
1691679226.517364-UTR-H-elongata_contig164956:438..4871691679226.517364-UTR-H-elongata_contig164956:438..487Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig164956 439..487 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig164956.4093.1prot_H-elongata_contig164956.4093.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig164956 79..438 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig164956.4093.1

>prot_H-elongata_contig164956.4093.1 ID=prot_H-elongata_contig164956.4093.1|Name=mRNA_H-elongata_contig164956.4093.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=120bp
GHSRRKPPRLPHRLLLPSNSRPSRTHPILHRLPLPLPPPSHTPSPPLPCS
WRRRHNQGGARRGGFPKRPLPPLTPHQKQRRRHLYLLPYRLQHHQRDSTY
CRHYHHCCYHRHRHRHRPP*
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mRNA from alignment at H-elongata_contig164956:79..487+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig164956.4093.1 ID=mRNA_H-elongata_contig164956.4093.1|Name=mRNA_H-elongata_contig164956.4093.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=409bp|location=Sequence derived from alignment at H-elongata_contig164956:79..487+ (Himanthalia elongata Himel1 dioecious)
GGCCACTCTCGCCGTAAACCTCCGCGCCTTCCTCATCGTCTCCTCCTACC
ATCCAACTCTCGACCTTCTCGAACCCATCCCATACTCCATCGCCTTCCCC
TTCCTCTCCCGCCTCCATCCCATACTCCATCGCCACCCCTTCCATGCTCG
TGGCGGCGGAGACACAATCAGGGTGGGGCGAGGAGGGGGGGGTTCCCAAA
GCGTCCCCTCCCTCCCTTGACCCCTCACCAGAAACAGCGGCGGCGACATC
TCTATCTTCTACCTTATCGACTACAGCACCACCAGAGGGACTCGACCTAC
TGTCGGCACTACCACCACTGCTGCTACCATCGTCATCGTCATCGACATCG
CCCCCCCTAAGTTCCGAGCCCTCCCCGTCCCCCCCATCTCTGCGGTGGTC
GTCATCCTT
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Coding sequence (CDS) from alignment at H-elongata_contig164956:79..487+

>mRNA_H-elongata_contig164956.4093.1 ID=mRNA_H-elongata_contig164956.4093.1|Name=mRNA_H-elongata_contig164956.4093.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=720bp|location=Sequence derived from alignment at H-elongata_contig164956:79..487+ (Himanthalia elongata Himel1 dioecious)
GGCCACTCTCGCCGTAAACCTCCGCGCCTTCCTCATCGTCTCCTCCTACC
ATCCAACTCTCGACCTTCTCGAACCCATCCCATACTCCATCGCCTTCCCC
TTCCTCTCCCGCCTCCATCCCATACTCCATCGCCACCCCTTCCATGCTCG
TGGCGGCGGAGACACAATCAGGGTGGGGCGAGGAGGGGGGGGTTCCCAAA
GCGTCCCCTCCCTCCCTTGACCCCTCACCAGAAACAGCGGCGGCGACATC
TCTATCTTCTACCTTATCGACTACAGCACCACCAGAGGGACTCGACCTAC
TGTCGGCACTACCACCACTGCTGCTACCATCGTCATCGTCATCGACATCG
CCCCCCCTAAGGCCACTCTCGCCGTAAACCTCCGCGCCTTCCTCATCGTC
TCCTCCTACCATCCAACTCTCGACCTTCTCGAACCCATCCCATACTCCAT
CGCCTTCCCCTTCCTCTCCCGCCTCCATCCCATACTCCATCGCCACCCCT
TCCATGCTCGTGGCGGCGGAGACACAATCAGGGTGGGGCGAGGAGGGGGG
GGTTCCCAAAGCGTCCCCTCCCTCCCTTGACCCCTCACCAGAAACAGCGG
CGGCGACATCTCTATCTTCTACCTTATCGACTACAGCACCACCAGAGGGA
CTCGACCTACTGTCGGCACTACCACCACTGCTGCTACCATCGTCATCGTC
ATCGACATCGCCCCCCCTAA
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