mRNA_H-elongata_contig1649.4090.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig1649.4090.1
Unique NamemRNA_H-elongata_contig1649.4090.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig1649.4090.1 vs. uniprot
Match: D8LU91_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU91_ECTSI)

HSP 1 Score: 211 bits (537), Expect = 4.210e-63
Identity = 123/191 (64.40%), Postives = 141/191 (73.82%), Query Frame = 1 
Query:    1 SLRVALEKIRHLETDSKGMLDAVEFREKEASSFREGARLAEERAHAHEKALASALEQLSDSGVSQSKKLVELADVNEELRQTRAALERAERLVFEQRQEADEXXXXXXXXXXETDALRDKLGQAERKNTELMTKNAAGRLAKKAEGNFGRSSTFCSSFCSCFRSRPTYRRVSSPAMLAAPPGTA--DSPWL 567
            S++VA EKIRHLE +S G+L A EFREKEA S +E A              ASALEQLSDSGVSQSKKL ELADV +EL+ T+AALERAERLVF+QR+EADE          ET+ALRDKL + ERKNTELM K AAGRLAK+  GNFGRSSTFC+ FCSCFR +P YRRV+SPA  A PPG++  D PWL
Sbjct:   30 SIKVAQEKIRHLEAESSGLLAAAEFREKEACSMQEKAXXXXXXXXXXXXXXASALEQLSDSGVSQSKKLAELADVTQELKLTKAALERAERLVFDQRREADERQRDEDRRRAETEALRDKLTRVERKNTELMAKQAAGRLAKRMRGNFGRSSTFCALFCSCFRGKPAYRRVASPAPFAPPPGSSPGDIPWL 220
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BLAST of mRNA_H-elongata_contig1649.4090.1 vs. uniprot
Match: A0A6H5KW87_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW87_9PHAE)

HSP 1 Score: 207 bits (527), Expect = 1.740e-60
Identity = 122/191 (63.87%), Postives = 141/191 (73.82%), Query Frame = 1 
Query:    1 SLRVALEKIRHLETDSKGMLDAVEFREKEASSFREGARLAEERAHAHEKALASALEQLSDSGVSQSKKLVELADVNEELRQTRAALERAERLVFEQRQEADEXXXXXXXXXXETDALRDKLGQAERKNTELMTKNAAGRLAKKAEGNFGRSSTFCSSFCSCFRSRPTYRRVSSPAMLAAPPGTA--DSPWL 567
            S++VA EKIRHLE +S  +L A E REKEA S +E A              ASALEQLSDSGVSQSKKL ELADV +EL++T+AALERAERLVF+QR+EADE          ET+ALRDKL + ERKNTELM K AAGRLAK+  GNFGRSSTFC+SFCSCFR +P YRRV+SPA  A P G++  DSPWL
Sbjct:  109 SIKVAHEKIRHLEAESSDLLAAAEVREKEACSMQEKAXXXXXXXXXXXXXXASALEQLSDSGVSQSKKLAELADVTQELKRTKAALERAERLVFDQRREADERQCDEDRRRAETEALRDKLTRVERKNTELMAKQAAGRLAKRMRGNFGRSSTFCASFCSCFRGKPAYRRVASPAPFAPPLGSSPGDSPWL 299
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1649.4090.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LU91_ECTSI4.210e-6364.40Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KW87_9PHAE1.740e-6063.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1649contigH-elongata_contig1649:12717..15333 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1162
Cds size519
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1649.4090.1prot_H-elongata_contig1649.4090.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig1649 13306..15279 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929964.6781743-UTR-H-elongata_contig1649:12716..133051622929964.6781743-UTR-H-elongata_contig1649:12716..13305Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1649 12717..13305 -
1691679226.4068182-UTR-H-elongata_contig1649:12716..133051691679226.4068182-UTR-H-elongata_contig1649:12716..13305Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1649 12717..13305 -
1622929964.748446-UTR-H-elongata_contig1649:15279..153331622929964.748446-UTR-H-elongata_contig1649:15279..15333Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1649 15280..15333 -
1691679226.454567-UTR-H-elongata_contig1649:15279..153331691679226.454567-UTR-H-elongata_contig1649:15279..15333Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1649 15280..15333 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929964.6898067-CDS-H-elongata_contig1649:13305..134881622929964.6898067-CDS-H-elongata_contig1649:13305..13488Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1649 13306..13488 -
1691679226.4196308-CDS-H-elongata_contig1649:13305..134881691679226.4196308-CDS-H-elongata_contig1649:13305..13488Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1649 13306..13488 -
1622929964.7047155-CDS-H-elongata_contig1649:13828..139201622929964.7047155-CDS-H-elongata_contig1649:13828..13920Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1649 13829..13920 -
1691679226.4286585-CDS-H-elongata_contig1649:13828..139201691679226.4286585-CDS-H-elongata_contig1649:13828..13920Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1649 13829..13920 -
1622929964.7174191-CDS-H-elongata_contig1649:14320..144471622929964.7174191-CDS-H-elongata_contig1649:14320..14447Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1649 14321..14447 -
1691679226.4375226-CDS-H-elongata_contig1649:14320..144471691679226.4375226-CDS-H-elongata_contig1649:14320..14447Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1649 14321..14447 -
1622929964.7328238-CDS-H-elongata_contig1649:15162..152791622929964.7328238-CDS-H-elongata_contig1649:15162..15279Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1649 15163..15279 -
1691679226.4459865-CDS-H-elongata_contig1649:15162..152791691679226.4459865-CDS-H-elongata_contig1649:15162..15279Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1649 15163..15279 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig1649.4090.1

>prot_H-elongata_contig1649.4090.1 ID=prot_H-elongata_contig1649.4090.1|Name=mRNA_H-elongata_contig1649.4090.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=173bp
MLDAVEFREKEASSFREGARLAEERAHAHEKALASALEQLSDSGVSQSKK
LVELADVNEELRQTRAALERAERLVFEQRQEADEKQRAEDRRRAETDALR
DKLGQAERKNTELMTKNAAGRLAKKAEGNFGRSSTFCSSFCSCFRSRPTY
RRVSSPAMLAAPPGTADSPWLT*
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mRNA from alignment at H-elongata_contig1649:12717..15333-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig1649.4090.1 ID=mRNA_H-elongata_contig1649.4090.1|Name=mRNA_H-elongata_contig1649.4090.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2617bp|location=Sequence derived from alignment at H-elongata_contig1649:12717..15333- (Himanthalia elongata Himel1 dioecious)
AGCTTGCGCGTGGCTCTGGAGAAGATCCGGCATCTCGAGACGGATAGCAA
GGGCATGTTGGACGCGGTGGAGTTCCGGGAAAAAGAGGCGTCTTCTTTCA
GGGAGGGCGCACGCCTCGCGGAGGAGCGGGCCCACGCCCACGAAAAGGCC
TTGGCGAGCGCGCTTGAGCAGGTGCTAACAGTATTTGTCTCTGTCAAGAG
CAGAAAATGTAATTCTTCTCGGTAATTCGCGCGATGAAATATCGGTATCG
AATTGTGCTCTCTTCTCTGTTCGCTTTACCGTTCAGTACCATTTATATAT
TTATATATATAAGCATCGTCAGTTTGGTGCGCGTTGCCGACGCGGAAGTC
TTCTCGAGGAGGTTTCTTTAGATTTGTGTGTCTCGCGAAATTTCGTTCTT
GCTTCCATTGATTTGTCTGCCTTTGAGTTATTCACGGTGGAGGCAGACGT
TTCTCCCCGGCGCTGCTGTAGTGTGATAGCACAAGTTAGAGCGGTTGATC
GGCGAGTTTATCTTACTCTTCACATTCGGAGGGTATTGATGTGGCGTGCA
TCACGAGATAGAGCAGCGCTCCGTATATTGCGTTATTTTAACACTTTGGA
GCTTTGCTAGTCTCGTGCTGCTGCTGCTGCTGTTCCTCTCTATATACATG
TTTTTCCGTCATGTCGGAGGCGTTTTAGTTTGTCTTTGAAATATGCCGGT
ATTGACTACTAAAATACCTACCACGACTTCGAAAAGTCTTCGCATCAGAT
AATCGTTACGCGCTGAGCACGAGCACGCGCCCCGCGATGTCGCAACTTTC
GGGTCCGCATTGCGATCATCCGCCTCGCGCTTCCTTCCTTTTCCCCTTCC
TCCCTCTTGACCTGTCTTGCTTGTGTTATTGCCCAGCTCTCCGATTCGGG
GGTGTCGCAGTCCAAGAAGTTGGTGGAGCTGGCCGATGTCAACGAGGAGC
TGAGACAAACGAGAGCGGCTTTGGAACGAGCGGAGAGACTCGTATTTGAG
CAACGTCAAGAAGGTGTGTTCTGTACGGAGGAAATGGGAAGGGGGTTGGG
GCAGAGAGGCGTTTTCGTTGAACGTAGGTAGGGAGAAGCTCCTGCAACCT
TGAAAATACGCCCGAGTGCTCGCGCCCGCGATGAGACGTTGTGTTCAGCG
TGTTGCGAGCCGAACGTTCCGCCGAGCGATGAGGTCATACGAGATCTGCA
GAGAGACACTACCGCAGGCGCTTCGCGACCTGTCGGCTCCTCTCCATGTT
CTCGGCCTTCTCTTCCTGCGTGAATTTTTTCTACCTTATTGTTTTTCCTC
TAATCGCTCTCGTGTCTAGTTGGCGGGTAATCTTGATATGAGTATGACTC
TCGGGCTGAGCGCTGTCCACCGGCTCGATTTTGATAACTTTTTTTTATCA
TCGCGATACGCAGCTGACGAGAAACAGCGTGCGGAGGATCGACGACGAGC
AGAGACGGACGCGCTGCGAGATAAGCTTGGACAGGCTGAGCGCAAGAACA
CGGAGGTGATCAATGATGAGAAGGAGACAGCATCCCGTAGACACTGTCGC
CCGTGGGTAGGGCTGTGTGTCCAGAGTATAGGGTAGCCAGATGCATGAAT
ATCTTGCAAAAAAAACTAGGGATATTTTTTTTGCGGTTTATTGTTCAAAA
AGATCAAAGAGATCAAGCAGTGAACATGTTTTTGTACTTATATCCCTGAG
TTTACGTTGTGCCTGCTTCCCGTTGCCACATCCACTTGGAACACGACGGC
TATGTACTGCTGCCCTCGCTCGTTCGCCCACGACTCACATCGCCCCTCCT
CTCATCACCATATTTTTATGTGGCCGCGTGGCGTGAAACACGCAGCTAAT
GACCAAGAACGCGGCCGGACGGCTCGCAAAGAAAGCGGAAGGAAATTTTG
GGAGGAGCAGCACATTTTGCTCGTCGTTTTGTAGCTGCTTTCGTAGCAGA
CCCACCTACCGGCGAGTGTCGTCTCCCGCGATGCTCGCTGCGCCTCCAGG
CACCGCAGATAGTCCTTGGCTGACGTGAGAAGTATACGTTGAGTCAATGT
AGGACGTTCGGGAGACCGTGGCATTGTTGTGCTCTGTCCTCAAGTCGTAA
AATTTCTCTCGATTTTTCCGGTTACCAGCAAGAGCTTTCTGTTTGTACGA
CTAAATAAATACACAGTTTTGGAGTGTATCTGGTGATTCGGGGCCTACTG
CTGTAGCTAGTTTTTAACTAGGTGTTTTGCTTATATATTAAAAAAAAATG
CTTGTCTGGGATGACGTAAGCTCACCAGGGGGGAACAAAGTGAAAAGAGT
AAGTGGCATGCTATCGAAGAGCATTGTGGGTAGAAGAACGGGTTGGTCGA
AGCTGTTGGGCGCACCGTGTTATTTCGCGGCGTGAGCTGATGTCGTGGTA
CGGTCCGTTTACGTTCGTTTGGACAAAAAGACAAAGAGAGAGTAACGAAG
AAACACACACTGGGGTCCGTTGGTTGCTATCGCCCGCCGTCCGTGCGCCG
TAACGTTACGGGGCGCACCTTGTTTTGATTGGTCATCACCCGATCTTTGG
GCATCATGTCAAGTGGTACTTCGGTACACACGTCTAGTTCTATCTTTTTT
ACTTATATTCCTCTGAG
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Coding sequence (CDS) from alignment at H-elongata_contig1649:12717..15333-

>mRNA_H-elongata_contig1649.4090.1 ID=mRNA_H-elongata_contig1649.4090.1|Name=mRNA_H-elongata_contig1649.4090.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1038bp|location=Sequence derived from alignment at H-elongata_contig1649:12717..15333- (Himanthalia elongata Himel1 dioecious)
ATGTTGGACGCGGTGGAGTTCCGGGAAAAAGAGGCGTCTTCTTTCAGGGA
GGGCGCACGCCTCGCGGAGGAGCGGGCCCACGCCCACGAAAAGGCCTTGG
CGAGCGCGCTTGAGCAGATGTTGGACGCGGTGGAGTTCCGGGAAAAAGAG
GCGTCTTCTTTCAGGGAGGGCGCACGCCTCGCGGAGGAGCGGGCCCACGC
CCACGAAAAGGCCTTGGCGAGCGCGCTTGAGCAGCTCTCCGATTCGGGGG
TGTCGCAGTCCAAGAAGTTGGTGGAGCTGGCCGATGTCAACGAGGAGCTG
AGACAAACGAGAGCGGCTTTGGAACGAGCGGAGAGACTCGTATTTGAGCA
ACGTCAAGAAGCTCTCCGATTCGGGGGTGTCGCAGTCCAAGAAGTTGGTG
GAGCTGGCCGATGTCAACGAGGAGCTGAGACAAACGAGAGCGGCTTTGGA
ACGAGCGGAGAGACTCGTATTTGAGCAACGTCAAGAAGCTGACGAGAAAC
AGCGTGCGGAGGATCGACGACGAGCAGAGACGGACGCGCTGCGAGATAAG
CTTGGACAGGCTGAGCGCAAGAACACGGAGCTGACGAGAAACAGCGTGCG
GAGGATCGACGACGAGCAGAGACGGACGCGCTGCGAGATAAGCTTGGACA
GGCTGAGCGCAAGAACACGGAGCTAATGACCAAGAACGCGGCCGGACGGC
TCGCAAAGAAAGCGGAAGGAAATTTTGGGAGGAGCAGCACATTTTGCTCG
TCGTTTTGTAGCTGCTTTCGTAGCAGACCCACCTACCGGCGAGTGTCGTC
TCCCGCGATGCTCGCTGCGCCTCCAGGCACCGCAGATAGTCCTTGGCTGA
CGTGACTAATGACCAAGAACGCGGCCGGACGGCTCGCAAAGAAAGCGGAA
GGAAATTTTGGGAGGAGCAGCACATTTTGCTCGTCGTTTTGTAGCTGCTT
TCGTAGCAGACCCACCTACCGGCGAGTGTCGTCTCCCGCGATGCTCGCTG
CGCCTCCAGGCACCGCAGATAGTCCTTGGCTGACGTGA
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