mRNA_H-elongata_contig16483.4086.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig16483.4086.1
Unique NamemRNA_H-elongata_contig16483.4086.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig16483.4086.1 vs. uniprot
Match: A0A5Q4ET32_9BACT (NADAR family protein n=1 Tax=Phycisphaeraceae bacterium TaxID=2026777 RepID=A0A5Q4ET32_9BACT)

HSP 1 Score: 108 bits (269), Expect = 1.350e-27
Identity = 53/109 (48.62%), Postives = 71/109 (65.14%), Query Frame = 1 
Query:    1 MASKARLLGDDSALSAIFAANSPRKQKRLGRHVRHFEHDFWQQE*KQIVFQGTLSKCSQNEDMRQLLLNTGQCCLAKPSPHDTLWGTGLSACDYRAAFPATWRGSNLLG 327
            M+ KAR+ GD  AL+ I A  +PRKQK  GR V+ F+ D W  E +Q+VF+G L+K  QN+++R+LLL TG   +A+ SP D +WG GL A    A  P  WRG+N LG
Sbjct:   41 MSEKARMFGDLDALNRIMATRNPRKQKAFGRSVKPFDADLWAAECQQVVFRGNLAKFEQNDELRELLLATGDRLIAEASPEDEVWGIGLPAEHPDALIPEKWRGTNWLG 149
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BLAST of mRNA_H-elongata_contig16483.4086.1 vs. uniprot
Match: A0A371YUE5_9GAMM (NADAR family protein n=1 Tax=Acinetobacter sichuanensis TaxID=2136183 RepID=A0A371YUE5_9GAMM)

HSP 1 Score: 103 bits (258), Expect = 8.440e-26
Identity = 53/109 (48.62%), Postives = 69/109 (63.30%), Query Frame = 1 
Query:    1 MASKARLLGDDSALSAIFAANSPRKQKRLGRHVRHFEHDFWQQE*KQIVFQGTLSKCSQNEDMRQLLLNTGQCCLAKPSPHDTLWGTGLSACDYRAAFPATWRGSNLLG 327
            MA KA+L GDD  L+ I     P++ K LGR V+ ++   W +    IV QG L+K SQNED++Q LLNTG+  L + SP D +WG GLSA D +A  P  W+G NLLG
Sbjct:   64 MAQKAKLFGDDEILNKILRTADPKEIKVLGRLVKGYQESVWLEHRFNIVVQGNLAKFSQNEDLKQFLLNTGERVLVEASPVDKIWGIGLSAEDEKAEKPLQWKGLNLLG 172
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BLAST of mRNA_H-elongata_contig16483.4086.1 vs. uniprot
Match: I6X1R0_ARAPF (NADAR domain-containing protein n=6 Tax=Arachnia TaxID=2801844 RepID=I6X1R0_ARAPF)

HSP 1 Score: 103 bits (256), Expect = 1.730e-25
Identity = 53/109 (48.62%), Postives = 68/109 (62.39%), Query Frame = 1 
Query:    1 MASKARLLGDDSALSAIFAANSPRKQKRLGRHVRHFEHDFWQQE*KQIVFQGTLSKCSQNEDMRQLLLNTGQCCLAKPSPHDTLWGTGLSACDYRAAFPATWRGSNLLG 327
            MA KARL GDD A   I  A+ P   KRLGR VR F+ D W +    +V +G  +K SQ+ D+++ LL TG+  L + SP D +WG GL+A D R A P +WRG NLLG
Sbjct:   61 MAGKARLFGDDGAADRIVKASHPDCAKRLGREVRGFDQDRWDEHRFDLVMEGNRAKFSQHPDLQEFLLGTGERVLVEASPVDRIWGAGLAADDDRIADPHSWRGLNLLG 169
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BLAST of mRNA_H-elongata_contig16483.4086.1 vs. uniprot
Match: A0A1R1ES34_9BACL (NADAR domain-containing protein n=13 Tax=Paenibacillus TaxID=44249 RepID=A0A1R1ES34_9BACL)

HSP 1 Score: 103 bits (256), Expect = 1.780e-25
Identity = 53/109 (48.62%), Postives = 67/109 (61.47%), Query Frame = 1 
Query:    1 MASKARLLGDDSALSAIFAANSPRKQKRLGRHVRHFEHDFWQQE*KQIVFQGTLSKCSQNEDMRQLLLNTGQCCLAKPSPHDTLWGTGLSACDYRAAFPATWRGSNLLG 327
            MA KARL GD+     I AA  P++ K LGR VR F+   W +E   IV +G  +K SQN+D++Q LL TGQ  L + SP D++WG GL+A D     P  WRG NLLG
Sbjct:   61 MAEKARLFGDEEIREQILAARHPKQAKDLGRKVRGFDPAVWDREGYSIVVRGNEAKFSQNDDLKQFLLGTGQRVLVEASPVDSIWGVGLAADDEAVLNPLLWRGKNLLG 169
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BLAST of mRNA_H-elongata_contig16483.4086.1 vs. uniprot
Match: UPI00190549E5 (NADAR family protein n=1 Tax=Chryseobacterium paridis TaxID=2800328 RepID=UPI00190549E5)

HSP 1 Score: 102 bits (254), Expect = 3.210e-25
Identity = 48/109 (44.04%), Postives = 68/109 (62.39%), Query Frame = 1 
Query:    1 MASKARLLGDDSALSAIFAANSPRKQKRLGRHVRHFEHDFWQQE*KQIVFQGTLSKCSQNEDMRQLLLNTGQCCLAKPSPHDTLWGTGLSACDYRAAFPATWRGSNLLG 327
            MA KARL  D+   + I   N P++ K LGR +++F+H  W +   +IV +G L K SQN D+R+ LL+T Q  + + SP+DT+WG G+   D +A  P  WRG NLLG
Sbjct:   60 MAEKARLFNDNEIRTLIIEINDPKEAKSLGRKIKNFDHQIWDERKYEIVKRGNLLKFSQNADLREFLLSTDQKVIVEASPYDTIWGIGMLESDPKAKNPNQWRGENLLG 168
[Close]
BLAST of mRNA_H-elongata_contig16483.4086.1 vs. uniprot
Match: UPI001CD9AEA9 (NADAR family protein n=1 Tax=Nonomuraea sp. NEAU-L178 TaxID=2878562 RepID=UPI001CD9AEA9)

HSP 1 Score: 101 bits (252), Expect = 9.110e-25
Identity = 54/109 (49.54%), Postives = 66/109 (60.55%), Query Frame = 1 
Query:    1 MASKARLLGDDSALSAIFAANSPRKQKRLGRHVRHFEHDFWQQE*KQIVFQGTLSKCSQNEDMRQLLLNTGQCCLAKPSPHDTLWGTGLSACDYRAAFPATWRGSNLLG 327
            MA KA L  D    + I AA+ P + K+LGR VR FE D W      IV +G L+K +Q+ D+   LL T    L + SPHD +WG GL+A D RAA PATWRG NLLG
Sbjct:   71 MAHKAWLFDDQQTAAEILAADHPGEAKKLGRAVRGFEEDVWNARRFDIVVRGNLAKFAQHPDLAGFLLGTRNRVLVEASPHDRIWGIGLTADDERAASPATWRGLNLLG 179
[Close]
BLAST of mRNA_H-elongata_contig16483.4086.1 vs. uniprot
Match: UPI001BEC34E8 (NADAR family protein n=1 Tax=Chryseobacterium sp. ISL-6 TaxID=2819143 RepID=UPI001BEC34E8)

HSP 1 Score: 100 bits (250), Expect = 1.280e-24
Identity = 46/109 (42.20%), Postives = 67/109 (61.47%), Query Frame = 1 
Query:    1 MASKARLLGDDSALSAIFAANSPRKQKRLGRHVRHFEHDFWQQE*KQIVFQGTLSKCSQNEDMRQLLLNTGQCCLAKPSPHDTLWGTGLSACDYRAAFPATWRGSNLLG 327
            MA KARL  DD  +  I  + +P++ K LGR +++F+H  W     +IV +G   K SQN + R+ LL+T    + + SP+DT+WG G+S  D +A  P+ WRG NLLG
Sbjct:   60 MAEKARLFNDDETMLKILESGNPKEAKSLGREIKNFDHQTWDNHKYEIVKRGNFLKFSQNSEFREFLLSTEDKVIVEASPYDTIWGIGISESDSKAENPSQWRGENLLG 168
[Close]
BLAST of mRNA_H-elongata_contig16483.4086.1 vs. uniprot
Match: A0A8J8GV93_9ACTN (NADAR family protein n=1 Tax=Hamadaea sp. TaxID=2024425 RepID=A0A8J8GV93_9ACTN)

HSP 1 Score: 100 bits (250), Expect = 1.420e-24
Identity = 51/109 (46.79%), Postives = 64/109 (58.72%), Query Frame = 1 
Query:    1 MASKARLLGDDSALSAIFAANSPRKQKRLGRHVRHFEHDFWQQE*KQIVFQGTLSKCSQNEDMRQLLLNTGQCCLAKPSPHDTLWGTGLSACDYRAAFPATWRGSNLLG 327
            M SKA+L GDD     + A   PR+ K LGR VR F+   W      IV  G+++K  Q+ D+R  LL TG+  L + SP D +WG GL A D RA+ PA WRG NLLG
Sbjct:   63 MWSKAKLFGDDEMADKVLAVKHPRQAKELGRQVRGFDQQTWDDNRYAIVVAGSVAKFGQHHDLRAYLLGTGERVLVEASPLDRIWGIGLGAADPRASDPAQWRGLNLLG 171
[Close]
BLAST of mRNA_H-elongata_contig16483.4086.1 vs. uniprot
Match: A0A1G8WRD4_9ACTN (NADAR domain-containing protein n=2 Tax=Nonomuraea maritima TaxID=683260 RepID=A0A1G8WRD4_9ACTN)

HSP 1 Score: 102 bits (254), Expect = 1.560e-24
Identity = 53/109 (48.62%), Postives = 68/109 (62.39%), Query Frame = 1 
Query:    1 MASKARLLGDDSALSAIFAANSPRKQKRLGRHVRHFEHDFWQQE*KQIVFQGTLSKCSQNEDMRQLLLNTGQCCLAKPSPHDTLWGTGLSACDYRAAFPATWRGSNLLG 327
            MA KA L GD+++ +AI AA  PR  K LGR VR F+   W+     IV +G ++K  Q  ++   LL+TG   L + SPHD +WG GLSA D RAA P TW+G NLLG
Sbjct:  119 MAHKAWLFGDEASAAAILAAGHPRDAKNLGRAVRGFDQAVWESRRFDIVVRGNVAKFGQQPELLGFLLSTGDRVLVEASPHDRVWGIGLSAGDDRAASPTTWQGLNLLG 227
[Close]
BLAST of mRNA_H-elongata_contig16483.4086.1 vs. uniprot
Match: A0A0K1PK87_9DELT (GTP cyclohydrolase II n=1 Tax=Labilithrix luteola TaxID=1391654 RepID=A0A0K1PK87_9DELT)

HSP 1 Score: 100 bits (249), Expect = 2.450e-24
Identity = 52/109 (47.71%), Postives = 66/109 (60.55%), Query Frame = 1 
Query:    1 MASKARLLGDDSALSAIFAANSPRKQKRLGRHVRHFEHDFWQQE*KQIVFQGTLSKCSQNEDMRQLLLNTGQCCLAKPSPHDTLWGTGLSACDYRAAFPATWRGSNLLG 327
            MA KARL GDD ALS I AA SP + K LGR VR+++ D W       V +G L+K  Q+E +   L +TG+  L + SPHD +WG GL   +  A  P+ WRG NLLG
Sbjct:   61 MAEKARLFGDDDALSNILAAKSPPEAKALGRTVRNYDDDAWSAARVDAVVRGNLAKFGQDEALGAFLRSTGRRILVEASPHDRIWGIGLGGSNPAAQQPSQWRGQNLLG 169
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16483.4086.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5Q4ET32_9BACT1.350e-2748.62NADAR family protein n=1 Tax=Phycisphaeraceae bact... [more]
A0A371YUE5_9GAMM8.440e-2648.62NADAR family protein n=1 Tax=Acinetobacter sichuan... [more]
I6X1R0_ARAPF1.730e-2548.62NADAR domain-containing protein n=6 Tax=Arachnia T... [more]
A0A1R1ES34_9BACL1.780e-2548.62NADAR domain-containing protein n=13 Tax=Paenibaci... [more]
UPI00190549E53.210e-2544.04NADAR family protein n=1 Tax=Chryseobacterium pari... [more]
UPI001CD9AEA99.110e-2549.54NADAR family protein n=1 Tax=Nonomuraea sp. NEAU-L... [more]
UPI001BEC34E81.280e-2442.20NADAR family protein n=1 Tax=Chryseobacterium sp. ... [more]
A0A8J8GV93_9ACTN1.420e-2446.79NADAR family protein n=1 Tax=Hamadaea sp. TaxID=20... [more]
A0A1G8WRD4_9ACTN1.560e-2448.62NADAR domain-containing protein n=2 Tax=Nonomuraea... [more]
A0A0K1PK87_9DELT2.450e-2447.71GTP cyclohydrolase II n=1 Tax=Labilithrix luteola ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16483contigH-elongata_contig16483:340..669 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score60.5
Seed ortholog evalue2.5e-07
Seed eggNOG ortholog644283.Micau_3582
Preferred nameybiA
KEGG koko:K09935
EggNOG free text desc.peptidyl-tyrosine sulfation
EggNOG OGs2HQRT@201174,4DDHA@85008,COG3236@2,COG5113@1
COG Functional cat.O
Best tax levelMicromonosporales
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size330
Cds size144
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929964.0091279-UTR-H-elongata_contig16483:339..5251622929964.0091279-UTR-H-elongata_contig16483:339..525Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16483 340..525 +
1691679226.150142-UTR-H-elongata_contig16483:339..5251691679226.150142-UTR-H-elongata_contig16483:339..525Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16483 340..525 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929964.0256064-CDS-H-elongata_contig16483:525..6691622929964.0256064-CDS-H-elongata_contig16483:525..669Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16483 526..669 +
1691679226.163816-CDS-H-elongata_contig16483:525..6691691679226.163816-CDS-H-elongata_contig16483:525..669Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16483 526..669 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16483.4086.1prot_H-elongata_contig16483.4086.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig16483 526..669 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig16483.4086.1

>prot_H-elongata_contig16483.4086.1 ID=prot_H-elongata_contig16483.4086.1|Name=mRNA_H-elongata_contig16483.4086.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=48bp
MRQLLLNTGQCCLAKPSPHDTLWGTGLSACDYRAAFPATWRGSNLLG*
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mRNA from alignment at H-elongata_contig16483:340..669+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig16483.4086.1 ID=mRNA_H-elongata_contig16483.4086.1|Name=mRNA_H-elongata_contig16483.4086.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=330bp|location=Sequence derived from alignment at H-elongata_contig16483:340..669+ (Himanthalia elongata Himel1 dioecious)
ATGGCCTCCAAAGCTCGCCTTTTGGGCGACGACTCGGCACTCTCCGCTAT
ATTTGCTGCTAACAGTCCCCGAAAGCAAAAACGCCTCGGCCGTCACGTAC
GCCACTTTGAGCACGATTTCTGGCAGCAAGAATAAAAACAAATAGTCTTC
CAAGGCACGCTGTCAAAATGTTCTCAAAATGAGGACATGCGCCAGCTCCT
CCTGAACACTGGCCAATGCTGCCTCGCCAAACCAAGCCCCCATGACACAT
TGTGGGGCACCGGTTTGAGTGCCTGCGATTACCGCGCCGCGTTCCCTGCC
ACTTGGCGTGGCTCCAACCTGCTAGGATAG
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Coding sequence (CDS) from alignment at H-elongata_contig16483:340..669+

>mRNA_H-elongata_contig16483.4086.1 ID=mRNA_H-elongata_contig16483.4086.1|Name=mRNA_H-elongata_contig16483.4086.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=288bp|location=Sequence derived from alignment at H-elongata_contig16483:340..669+ (Himanthalia elongata Himel1 dioecious)
ATGCGCCAGCTCCTCCTGAACACTGGCCAATGCTGCCTCGCCAAACCAAG
CCCCCATGACACATTGTGGGGCACCGGTTTGAGTGCCTGCGATTACCGCG
CCGCGTTCCCTGCCACTTGGCGTGGCTCCAACCTGCTAGGATAGATGCGC
CAGCTCCTCCTGAACACTGGCCAATGCTGCCTCGCCAAACCAAGCCCCCA
TGACACATTGTGGGGCACCGGTTTGAGTGCCTGCGATTACCGCGCCGCGT
TCCCTGCCACTTGGCGTGGCTCCAACCTGCTAGGATAG
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