prot_H-elongata_contig1648.4084.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig1648.4084.1
Unique Nameprot_H-elongata_contig1648.4084.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length145
Homology
BLAST of mRNA_H-elongata_contig1648.4084.1 vs. uniprot
Match: D7G8W1_ECTSI (tRNA-binding domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8W1_ECTSI)

HSP 1 Score: 233 bits (593), Expect = 1.460e-76
Identity = 119/144 (82.64%), Postives = 133/144 (92.36%), Query Frame = 0
Query:    1 MAISQAAVEEIENMDEVPTLKDPVTISEFEALDVRVGCIVVADLIPDPEHGNKPSRKYLSLVVDLGNEKRRVVSAIRSIVDVEDAIGKTVLIAANVEEETILGRPSRGRLLSASNFSKKPMPRTLRTVLLGGGGVPAGSPISGL 144
            MA+S AA EEI NM++VP LKDPV I++FEALD+RVG IV+A+LIPDP+HGNKPSRKYLSLVVDLGNEKRRVVSA+RSIVDVEDAIGK VL+AANVEEETILG PSRG+LLS SNFSK+PMPRTLRTVLLGGGGVP GS +SGL
Sbjct:    3 MAVSHAAAEEISNMEDVPKLKDPVAIADFEALDIRVGRIVLAELIPDPDHGNKPSRKYLSLVVDLGNEKRRVVSAVRSIVDVEDAIGKAVLMAANVEEETILGLPSRGKLLSGSNFSKEPMPRTLRTVLLGGGGVPPGSAVSGL 146          
BLAST of mRNA_H-elongata_contig1648.4084.1 vs. uniprot
Match: A0A836CNH0_9STRA (tRNA-binding domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNH0_9STRA)

HSP 1 Score: 182 bits (463), Expect = 1.390e-56
Identity = 92/144 (63.89%), Postives = 116/144 (80.56%), Query Frame = 0
Query:    1 MAISQAAVEEIENMDEVPTLKDPVTISEFEALDVRVGCIVVADLIPDPEHGNKPSRKYLSLVVDLGNEKRRVVSAIRSIVDVEDAIGKTVLIAANVEEETILGRPSRGRLLSASNFSKKPMPRTLRTVLLGGGGVPAGSPISGL 144
            +A+S A  EE  +  +VP L+  V+++ +EALD+RVG IV A+ +PDP+HGNKPSRKYLSLVV LGNE R ++S +R + DVE+AIGK+VL+ AN EEE ILGRPSRGRLL A+N+SK PMPRTLRTVLLGGG VP GS ++GL
Sbjct:   16 VAVSTALGEEATDSADVPALQPDVSVASYEALDIRVGRIVKAETVPDPDHGNKPSRKYLSLVVALGNEFRSIISGVRPVFDVEEAIGKSVLVVANTEEEVILGRPSRGRLLVAANYSKAPMPRTLRTVLLGGGPVPPGSQVTGL 159          
BLAST of mRNA_H-elongata_contig1648.4084.1 vs. uniprot
Match: A0A7S0MGA1_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MGA1_9CRYP)

HSP 1 Score: 160 bits (406), Expect = 2.690e-47
Identity = 83/144 (57.64%), Postives = 114/144 (79.17%), Query Frame = 0
Query:    1 MAISQAAVEEIENMD--EVPTLKDPVTISEFEALDVRVGCIVVADLIPDPEHGNKPSRKYLSLVVDLGNEKRRVVSAIRSIVDVEDAIGKTVLIAANVEEETILGRPSRGRLLSASNFSKKPMPRTLRTVLLGGGGVPAGSPIS 142
            MA  + AV+E +N+D  ++P +KD V+ +  ++LD+RVG I  ADLIPDPEH  KPSRKYL L+V++G EKR +V+A R I DVE++IG++VL+A NVE++T+LG  S GRLLSASN +++P+PRTLRTVL  GGG+P GSP+S
Sbjct:   61 MAFVKGAVDEEDNLDPSDIPPVKDEVSNALLDSLDIRVGRIERADLIPDPEHEMKPSRKYLRLIVNIGTEKRTIVAASRGIYDVEESIGRSVLVACNVEQQTVLGVASHGRLLSASNPTRRPIPRTLRTVLSKGGGLPPGSPVS 204          
BLAST of mRNA_H-elongata_contig1648.4084.1 vs. uniprot
Match: A0A2K1L6P8_PHYPA (tRNA-binding domain-containing protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1L6P8_PHYPA)

HSP 1 Score: 96.3 bits (238), Expect = 7.620e-22
Identity = 58/131 (44.27%), Postives = 79/131 (60.31%), Query Frame = 0
Query:   18 PTLKDPVTISEFEALDVRVGCIVVADLIPDPE---HGNKP--SRKYLSLVVDLGNEKRRVVSAIRSIVDVEDAIGKTVLIAANVEEETILGRPSRGRLLSASNFSKKPMPRTLRTVLLGGGGVPAGSPISG 143
            P +K  V  S FE++DVRVG I  A  + D E      KP  SRK+L L VD+G E+R +VS  + ++DVEDA+GK VLI ANV    + G  S G +L+  N+   PMPR+ + +L G G +P GS + G
Sbjct:   89 PAVKPEVDPSIFESVDVRVGLITDAKPVQDAEMTAKRGKPTLSRKFLQLTVDIGCEQRTIVSECKYVMDVEDAVGKKVLIVANVPPTEVNGIKSHGVVLTGFNYDPTPMPRSFKVILPGLGRLPPGSQVKG 219          
BLAST of mRNA_H-elongata_contig1648.4084.1 vs. uniprot
Match: A9TWI9_PHYPA (Predicted protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9TWI9_PHYPA)

HSP 1 Score: 94.0 bits (232), Expect = 5.550e-21
Identity = 57/127 (44.88%), Postives = 77/127 (60.63%), Query Frame = 0
Query:   18 PTLKDPVTISEFEALDVRVGCIVVADLIPDPE---HGNKP--SRKYLSLVVDLGNEKRRVVSAIRSIVDVEDAIGKTVLIAANVEEETILGRPSRGRLLSASNFSKKPMPRTLRTVLLGGGGVPAGS 139
            P +K  V  S FE++DVRVG I  A  + D E      KP  SRK+L L VD+G E+R +VS  + ++DVEDA+GK VLI ANV    + G  S G +L+  N+   PMPR+ + +L G G +P GS
Sbjct:   61 PAVKPEVDPSIFESVDVRVGLITDAKPVQDAEMTAKRGKPTLSRKFLQLTVDIGCEQRTIVSECKYVMDVEDAVGKKVLIVANVPPTEVNGIKSHGVVLTGFNYDPTPMPRSFKVILPGLGRLPPGS 187          
BLAST of mRNA_H-elongata_contig1648.4084.1 vs. uniprot
Match: L0AB28_CALLD (Protein containing C-terminal region/beta chain of methionyl-tRNA synthetase n=2 Tax=Caldisphaera lagunensis TaxID=200415 RepID=L0AB28_CALLD)

HSP 1 Score: 68.2 bits (165), Expect = 4.590e-12
Identity = 36/103 (34.95%), Postives = 66/103 (64.08%), Query Frame = 0
Query:   20 LKDPVTISEFEALDVRVGCIVVADLIPDPEHGNKPSRKYLSLVVDLGNEKRRVVSAIRSIVDVEDAIGKTVLIAANVEEETILGRPSRGRLLSAS-NFSKKPM 121
            L++ +  SEF  +D+RVG ++ A+L+P+       SRK + L+VDLG E+R++++ ++     ED +GK V++ AN++ + + G  S+G +L+A     KKP+
Sbjct:    4 LEEKIDYSEFSKIDLRVGKVISAELVPN-------SRKLIKLIVDLGTEQRQILAGLQKWYKPEDFVGKFVVVVANLKSKIMGGLESQGMILAAPCGDDKKPV 99          
BLAST of mRNA_H-elongata_contig1648.4084.1 vs. uniprot
Match: A0A1F8JXF2_9BACT (Methionine--tRNA ligase n=1 Tax=Chlamydiae bacterium RIFCSPLOWO2_01_FULL_28_7 TaxID=1797606 RepID=A0A1F8JXF2_9BACT)

HSP 1 Score: 72.4 bits (176), Expect = 4.890e-12
Identity = 40/104 (38.46%), Postives = 62/104 (59.62%), Query Frame = 0
Query:   12 ENMDEVPTLKDPVTISEFEALDVRVGCIVVADLIPDPEHGNKPSRKYLSLVVDLGNEKRRVVSAIRSIVDVEDAIGKTVLIAANVEEETILGRPSRGRLLSASN 115
            EN+     LK+ +T  +F  LD+RVG I+ A+ +       + S K L + VD+G EKR++VS+I      ED IGK V+I AN++   ++G  S+G +L+A N
Sbjct:  558 ENLKSFEKLKEEITYEDFSKLDLRVGKIISAEKV-------EKSNKLLKITVDIGFEKRQIVSSIAKTFKPEDLIGKKVIIVANLKTAKLMGIDSQGMILAAGN 654          
BLAST of mRNA_H-elongata_contig1648.4084.1 vs. uniprot
Match: G0EDL9_PYRF1 (Methionyl-tRNA synthetase, beta subunit n=1 Tax=Pyrolobus fumarii (strain DSM 11204 / 1A) TaxID=694429 RepID=G0EDL9_PYRF1)

HSP 1 Score: 67.8 bits (164), Expect = 6.800e-12
Identity = 38/92 (41.30%), Postives = 55/92 (59.78%), Query Frame = 0
Query:   22 DPVTISEFEALDVRVGCIVVADLIPDPEHGNKPSRKYLSLVVDLGNEKRRVVSAIRSIVDVEDAIGKTVLIAANVEEETILGRPSRGRLLSA 113
            + +TI EF  +D+RVG +V A+ IP          + L L+VDLGNEKR+++S I      ED IGK V++ AN+  + I G  S G +L+A
Sbjct:    9 EQITIDEFARIDLRVGIVVEAEHIP--------GTRLLRLIVDLGNEKRQIISGIAEWYKPEDLIGKRVVVVANLAPKRIRGYLSEGMILAA 92          
BLAST of mRNA_H-elongata_contig1648.4084.1 vs. uniprot
Match: A0A2H0VUE8_9BACT (Methionine--tRNA ligase n=1 Tax=Chlamydiae bacterium CG10_big_fil_rev_8_21_14_0_10_42_34 TaxID=1973936 RepID=A0A2H0VUE8_9BACT)

HSP 1 Score: 71.2 bits (173), Expect = 1.240e-11
Identity = 44/111 (39.64%), Postives = 66/111 (59.46%), Query Frame = 0
Query:    9 EEIENMDEVPT-----LKDPVTISEFEALDVRVGCIVVADLIPDPEHGNKPSRKYLSLVVDLGNEKRRVVSAIRSIVDVEDAIGKTVLIAANVEEETILGRPSRGRLLSAS 114
            E+++ + EV T     LKDP+T   FE +D+RV  ++ A  +P        S+K L L+VD+G EKR +VS I    + E  +GK V+I AN+   TI+G  S+G +L+AS
Sbjct:  556 EKLKEVKEVTTTTYQPLKDPITFETFEKIDLRVAQVLEAVKVPK-------SKKLLKLLVDVGFEKRTIVSGIALSYEPEQLVGKKVVIVANLAPATIMGIESQGMILAAS 659          
BLAST of mRNA_H-elongata_contig1648.4084.1 vs. uniprot
Match: A0A0P0N3E0_9CREN (Methionine--tRNA ligase subunit beta n=1 Tax=Pyrodictium delaneyi TaxID=1273541 RepID=A0A0P0N3E0_9CREN)

HSP 1 Score: 67.0 bits (162), Expect = 1.260e-11
Identity = 37/90 (41.11%), Postives = 55/90 (61.11%), Query Frame = 0
Query:   24 VTISEFEALDVRVGCIVVADLIPDPEHGNKPSRKYLSLVVDLGNEKRRVVSAIRSIVDVEDAIGKTVLIAANVEEETILGRPSRGRLLSA 113
            +TI EF  +D+RVG +V A+ IP          + L LVVDLG+EKR+++S I      ED +GK V++ AN++ + I G  S G +L+A
Sbjct:    8 ITIDEFARIDLRVGKVVEAERIP--------GTRLLKLVVDLGSEKRQIISGIAEYYSPEDLLGKKVVVVANLKPKKIRGYLSEGMILAA 89          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1648.4084.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8W1_ECTSI1.460e-7682.64tRNA-binding domain-containing protein n=2 Tax=Ect... [more]
A0A836CNH0_9STRA1.390e-5663.89tRNA-binding domain-containing protein n=1 Tax=Tri... [more]
A0A7S0MGA1_9CRYP2.690e-4757.64Hypothetical protein n=1 Tax=Cryptomonas curvata T... [more]
A0A2K1L6P8_PHYPA7.620e-2244.27tRNA-binding domain-containing protein n=1 Tax=Phy... [more]
A9TWI9_PHYPA5.550e-2144.88Predicted protein n=1 Tax=Physcomitrium patens Tax... [more]
L0AB28_CALLD4.590e-1234.95Protein containing C-terminal region/beta chain of... [more]
A0A1F8JXF2_9BACT4.890e-1238.46Methionine--tRNA ligase n=1 Tax=Chlamydiae bacteri... [more]
G0EDL9_PYRF16.800e-1241.30Methionyl-tRNA synthetase, beta subunit n=1 Tax=Py... [more]
A0A2H0VUE8_9BACT1.240e-1139.64Methionine--tRNA ligase n=1 Tax=Chlamydiae bacteri... [more]
A0A0P0N3E0_9CREN1.260e-1141.11Methionine--tRNA ligase subunit beta n=1 Tax=Pyrod... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.50.140coord: 18..134
e-value: 2.9E-19
score: 71.0
NoneNo IPR availablePANTHERPTHR11586:SF35coord: 18..141
NoneNo IPR availablePANTHERPTHR11586FAMILY NOT NAMEDcoord: 18..141
IPR002547tRNA-binding domainPFAMPF01588tRNA_bindcoord: 55..118
e-value: 1.5E-7
score: 31.4
IPR002547tRNA-binding domainPROSITEPS50886TRBDcoord: 28..142
score: 16.253
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 23..141

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1648contigH-elongata_contig1648:522..3850 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1648.4084.1mRNA_H-elongata_contig1648.4084.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig1648 347..4424 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig1648.4084.1 ID=prot_H-elongata_contig1648.4084.1|Name=mRNA_H-elongata_contig1648.4084.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=145bp
MAISQAAVEEIENMDEVPTLKDPVTISEFEALDVRVGCIVVADLIPDPEH
GNKPSRKYLSLVVDLGNEKRRVVSAIRSIVDVEDAIGKTVLIAANVEEET
ILGRPSRGRLLSASNFSKKPMPRTLRTVLLGGGGVPAGSPISGL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002547tRNA-bd_dom
IPR012340NA-bd_OB-fold