mRNA_H-elongata_contig1647.4080.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig1647.4080.1
Unique NamemRNA_H-elongata_contig1647.4080.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig1647.4080.1 vs. uniprot
Match: A0A6H5J814_9PHAE (Polyketide_cyc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J814_9PHAE)

HSP 1 Score: 389 bits (998), Expect = 4.120e-125
Identity = 222/343 (64.72%), Postives = 254/343 (74.05%), Query Frame = 3 
Query:  459 FVTSAALLFSCAWITGTPIVCS-AFLVQAPSAVTSRC-TCNSEQFYGVGRSNSLRRPLAQGTSGATNPEWSDDLAGGFRMLWSGGKRTKGNEVTVNIERPGINSRRISGSIVINRPIEVVWLTLTDYNRLAEYVPNLTQSTVRGSDDGTIRLWQEGAQKIVGFDFRASVEMFMDEHFGDPENKTAQRKLTFGLLKSRMFQDFFGEWRMQFNSRKQRPGPQEREYEYSTKLFYMVNIKPKGPVPVLALEWQISNEVPNNLKGLKRAAESATPEYVEMRRKERNEFEEINISQGLDRENGCDDDQ-----TTAKVGAEAFVPRGND---IARPEWDTDETLEAYI 1457
            FVTS  LL SC      P  C+ AF+V+AP+A  S C  C +EQ   + RS+ LRRPL     G+T     D  A   +MLWSGG+RT+GNEVTVNIER   NSRRISGSIVINRPIE VWLTLTDYNRLA+YVPNLT+S +R S+DG IRLWQEGAQKIVGFDFRASVEMFM+EHFGDPENK AQRKLTFGLL+SRMF +F GEWRMQFNSRKQ    Q  +Y+Y+TKLFYMV+I+PKGPVPVLALEWQISNEVPNNL  LK AAE+ TPEYVEMRRKER    E   ++        DD +       AK GAEAFV +GN      +PEW++DETLEAY+
Sbjct:   23 FVTS--LLLSCL-----PAYCTTAFVVRAPAATGSFCGECGNEQVKALARSD-LRRPLPYPARGSTKIA-RDGEASRLQMLWSGGRRTRGNEVTVNIERTSRNSRRISGSIVINRPIEDVWLTLTDYNRLAKYVPNLTESKLRPSNDGGIRLWQEGAQKIVGFDFRASVEMFMEEHFGDPENKMAQRKLTFGLLESRMFNEFDGEWRMQFNSRKQFNTAQGPQYQYTTKLFYMVHIRPKGPVPVLALEWQISNEVPNNLSALKLAAEAVTPEYVEMRRKER----EQEAAKRFASPPPADDREKRQANAIAKGGAEAFVAKGNGDEGYGQPEWESDETLEAYL 352
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BLAST of mRNA_H-elongata_contig1647.4080.1 vs. uniprot
Match: D7G841_ECTSI (Polyketide_cyc domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G841_ECTSI)

HSP 1 Score: 353 bits (907), Expect = 7.650e-113
Identity = 187/267 (70.04%), Postives = 208/267 (77.90%), Query Frame = 3 
Query:  690 MLWSGGKRTKGNEVTVNIERPGINSRRISGSIVINRPIEVVWLTLTDYNRLAEYVPNLTQSTVRGSDDGTIRLWQEGAQKIVGFDFRASVEMFMDEHFGDPENKTAQRKLTFGLLKSRMFQDFFGEWRMQFNSRKQRPGPQEREYEYSTKLFYMVNIKPKGPVPVLALEWQISNEVPNNLKGLKRAAESATPEYVEMRRKERNEFEEINISQGLDR--------ENGCDDDQTTAKVGAEAFVPRGND---IARPEWDTDETLEAYI 1457
            MLWSGG+RT+GNEVTVNIER   NSRRISGSIV+NRPIE VWLTLTDY+RLA+YVPNLTQS VR S+DG IRLWQEGAQKIVGFDFRASVEMFM+EHFGDPEN+ AQRKLTFGLL SRMF +F GEWRMQFNSRKQ    Q  EY+Y+TKLFYMV+I+PKGPVPVLALEWQISNEVPNNL  LK AAE+ TPEYVEMRR+ER                      E    +    AK GAEAFV +GN      +PEW++DETLEAY+
Sbjct:    1 MLWSGGRRTQGNEVTVNIERTSRNSRRISGSIVVNRPIEDVWLTLTDYDRLAKYVPNLTQSKVRPSNDGGIRLWQEGAQKIVGFDFRASVEMFMEEHFGDPENRMAQRKLTFGLLDSRMFNEFDGEWRMQFNSRKQFNTAQGPEYQYTTKLFYMVHIRPKGPVPVLALEWQISNEVPNNLAALKLAAEAVTPEYVEMRRRERXXXXXXXXXXXXXXXXXXXXXDEREKREANAIAKGGAEAFVAKGNGDEGYGQPEWESDETLEAYL 267
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BLAST of mRNA_H-elongata_contig1647.4080.1 vs. uniprot
Match: A0A835ZJC3_9STRA (Polyketide_cyc domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJC3_9STRA)

HSP 1 Score: 260 bits (664), Expect = 6.850e-77
Identity = 145/283 (51.24%), Postives = 184/283 (65.02%), Query Frame = 3 
Query:  690 MLWSGGKRTKGNEVTVNIERPGINSRRISGSIVINRPIEVVWLTLTDYNRLAEYVPNLTQSTVRGSDDGTIRLWQEGAQKIVGFDFRASVEMFMDEHFGDPENKTAQRKLTFGLLKSRMFQDFFGEWRMQFNSR--KQRPGPQEREYEYSTKLFYMVNIKPKGPVPVLALEWQISNEVPNNLKGLKRAAESATPEYVEMRRKERNEFEEINISQGLDRENGCDDDQTTAKVGAEAF--------------------VPRGNDIARPE---WDTDETLEAYIAK 1463
            MLWSGG+RT+ ++VTVNIERP +NSRRISGSI++++PIE VWL LTDY+RL++YVPNLTQS    S  G IRL+QEGAQ+IVGFDFRAS+ M M+EH+GDP++K A RK+ F L+ S MF DF GEWR+QFNSR   +  GP + +Y YSTK+FYMVNI+PKG VPV+ALEWQIS EVPNNL  +KR AE     + + R++     +   +  G+          T A V                         +P     A  +   W+TDETLEAYI K
Sbjct:    1 MLWSGGRRTRPDQVTVNIERPSLNSRRISGSIIVDKPIEDVWLVLTDYDRLSDYVPNLTQSRQVPSPTGGIRLFQEGAQQIVGFDFRASLVMDMEEHYGDPDDKLAMRKIKFKLVDSAMFTDFSGEWRLQFNSRIVNKGAGPGQEKYTYSTKVFYMVNIRPKGVVPVVALEWQISEEVPNNLAAVKRTAEVMDSAFFDARQQA---MDARQLRSGVYISGYSQASATAAAVXXXXXANVALTTQQPVLQQQQQRYPLPPDQSAAGVDSNGWETDETLEAYIQK 280
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BLAST of mRNA_H-elongata_contig1647.4080.1 vs. uniprot
Match: A0A4D9CWA6_9STRA (Polyketide_cyc domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CWA6_9STRA)

HSP 1 Score: 200 bits (509), Expect = 1.670e-53
Identity = 122/279 (43.73%), Postives = 153/279 (54.84%), Query Frame = 3 
Query:  663 SDDLAGGFRML-----WSGGKRTKGNEVTVNIERPGINSRRISGSIVINRPIEVVWLTLTDYNRLAEYVPNLTQSTVRGSDDG--------TIRLWQEGAQKIVGFDFRASVEMFMDEHFGDPENKTAQRKLTFGLLKSRMFQDFFGEWRMQFNSRKQRPGPQEREYEYSTKLFYMVNIKPKGPVPVLALEWQISNEVPNNLKGLKRAAESATPEYVEMRRKERNEFEEINISQGLDRENGCDDDQTT-AKVGAEAFVPRGNDIARPEWDTDETLEAYI 1457
            S    G   M+     W GGK     EV VNIE P  N RRIS SIV+NRP+  VW  LTDYN L+EYVPNLTQS +  +  G         +RL+QEGAQ IVGF+F+AS+ M M+E     + K  QR++ F L+ S MF DF GEWR+Q  SR  R   +  E+ YSTKLFYMVN+KPKGPVPV ALEW+I  +VP NL+ +K A+E    +                          C+ DQ   A + A     +       +W +DETL AYI
Sbjct:   73 SSQRTGSLEMISSMFRWRGGKNEDEEEVLVNIESPSANVRRISSSIVVNRPLSDVWKILTDYNNLSEYVPNLTQSRLVATPPGWEARGKNKEVRLFQEGAQTIVGFNFKASLTMDMEEVVEAEDEKLGQRRIKFRLVDSAMFSDFSGEWRLQCYSRM-RTACENEEWTYSTKLFYMVNVKPKGPVPVGALEWRIKEDVPTNLRAVKVASEKLPWD--------------------------CEQDQAALAALAAGRREQQSRMTVAQDWMSDETLGAYI 324
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BLAST of mRNA_H-elongata_contig1647.4080.1 vs. uniprot
Match: W7TTP4_9STRA (START-like domain protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TTP4_9STRA)

HSP 1 Score: 202 bits (515), Expect = 3.500e-53
Identity = 120/263 (45.63%), Postives = 150/263 (57.03%), Query Frame = 3 
Query:  696 WSGGKRTKGNEVTVNIERPGINSRRISGSIVINRPIEVVWLTLTDYNRLAEYVPNLTQSTVRGSDDG--------TIRLWQEGAQKIVGFDFRASVEMFMDEHFGDPENKTAQRKLTFGLLKSRMFQDFFGEWRMQFNSRKQRPGPQEREYEYSTKLFYMVNIKPKGPVPVLALEWQISNEVPNNLKGLKRAAESATPEYVEMRRKERNEFEEINISQGLDRENGCDDDQTT-AKVGAEAFVPRGNDIARPEWDTDETLEAYI 1457
            W GGK     EV VNIE P  N RRIS SIV+NRP+  VW  LTDYN L+EYVPNLTQS +  +  G         +RL+QEGAQ IVGF+F+AS+ M M+E F   + K  QR++ F L+ S MF DF GEWR+Q  SR  R   +  E+ YSTKLFYMVN+KPKGPVPV ALEW+I  +VP NL+ +K A+E    +                          C+ DQ   A + A     +       +W +DETL AYI
Sbjct:  201 WRGGKNEDEEEVLVNIESPSANVRRISSSIVVNRPLSDVWKILTDYNNLSEYVPNLTQSRLVATPPGWEARGKNKEVRLFQEGAQTIVGFNFKASLTMDMEEVFEAEDEKLGQRRIKFRLVDSAMFSDFSGEWRLQCYSRM-RTACENEEWTYSTKLFYMVNVKPKGPVPVGALEWRIKEDVPTNLRAVKVASEKLPWD--------------------------CEQDQAALAALAAGRREQQARMTVAQDWMSDETLGAYI 436
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BLAST of mRNA_H-elongata_contig1647.4080.1 vs. uniprot
Match: A0A6V1KTJ0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1KTJ0_HETAK)

HSP 1 Score: 187 bits (474), Expect = 2.530e-49
Identity = 102/195 (52.31%), Postives = 134/195 (68.72%), Query Frame = 3 
Query:  690 MLWSGGKRTKGN-----EVTVNIERPGINSRRISGSIVINRPIEVVWLTLTDYNRLAEYVPNLTQSTVRGSDDGTIRLWQEGAQKIVGFDFRASVEMFMDEHFGDPENKTAQRKLTFGLLKSRMFQDFFGEWRMQFNSRKQRPGPQ--EREYEYSTKLFYMVNIKPKGPVPVLALEWQISNEVPNNLKGLKRAAE 1253
            M++  G+R  G+      V V IE P +NSR+ISGSIVI+RP++ VW  L+DY+ LA+ VPNLTQS +     G IRL+QEGAQKI+GFDFRAS+ M M E     E K  QRK+ F L++S MF  F GEW +Q  SR + P P   + ++ Y++K+FY V +KP+GPVPV ALEWQI +EVPNNL+ +K A E
Sbjct:   68 MVFGFGRRKDGSPGHEDNVDVRIEAPSMNSRKISGSIVIDRPVDDVWKILSDYDHLADNVPNLTQSKLVPHPTGGIRLFQEGAQKIIGFDFRASLTMDMTEVMEKAEEKFGQRKILFKLVESAMFNGFDGEWSIQNYSRIKNPNPTGTDDQWIYTSKVFYSVVVKPRGPVPVAALEWQIKSEVPNNLRAVKLATE 262
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BLAST of mRNA_H-elongata_contig1647.4080.1 vs. uniprot
Match: A0A0G4H7W0_VITBC (Polyketide_cyc domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4H7W0_VITBC)

HSP 1 Score: 183 bits (465), Expect = 2.930e-47
Identity = 105/231 (45.45%), Postives = 140/231 (60.61%), Query Frame = 3 
Query:  612 LRRPLAQGTSGATNPEW---SDDLAGGFRMLWSGGKRTKGNEVTVNIERPGINSRRISGSIVINRPIEVVWLTLTDYNRLAEYVPNLT------------QSTVRGSDDGTIRLWQEGAQKIVGFDFRASVEMFMDEHFGDPENKTAQRKLTFGLLKSRMFQDFFGEWRMQFNSRKQR--PGPQEREYEYSTKLFYMVNIKPKGPVPVLALEWQISNEVPNNLKGLKRAAE 1253
            LR PLA  + G +  E     D +  G             + V+VNIERP  N RRISGS++++  +E  W  LTDY+ LA +VPNL              S + G D   +RL+QEGAQKI+GFDFRA+V M M E  GDPEN+ A R + F L  S+ F  F GEW++Q ++R+ R  P   + E  Y+TKLFY+V ++PKGPVPV+ALEW+I  +VP NLK +K+AAE
Sbjct:  104 LRAPLAPASVGPSVDEEMGRGDAVRLGLTTFRRRAMLDTEDSVSVNIERPAANVRRISGSVIVDTSMEDCWSILTDYDNLAAHVPNLVVSQRVPLPRSLASSGLNGDDMWQMRLYQEGAQKIIGFDFRAAVTMDMREVLGDPENRMAPRLIEFKLADSQFFSQFDGEWKIQAHTRRVRRHPATGDDEISYTTKLFYVVTVRPKGPVPVMALEWRIKEDVPTNLKAVKQAAE 334
[Close]
BLAST of mRNA_H-elongata_contig1647.4080.1 vs. uniprot
Match: A0A7S2SEL4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SEL4_9STRA)

HSP 1 Score: 176 bits (445), Expect = 3.130e-45
Identity = 105/244 (43.03%), Postives = 140/244 (57.38%), Query Frame = 3 
Query:  726 EVTVNIERPGINSRRISGSIVINRPIEVVWLTLTDYNRLAEYVPNLTQSTVRGSDDGTIRLWQEGAQKIVGFDFRASVEMFMDEHFGDPENKTAQRKLTFGLLKSRMFQDFFGEWRMQFNSRKQRPGPQEREYEYSTKLFYMVNIKPKGPVPVLALEWQISNEVPNNLKGLKRAAESATPEYVEMRRKERNEFEEINISQGLDRENGCDDDQTTAKVGAEAFVPRGNDIARPEWDTDETLEAYI 1457
            ++ V IERP +NSRRIS SIVI+RP E VW  LTDYN LA +VPNL QS +     G +RL+QEGAQKI+GFDF AS+ M M+E   D    ++++ + F L++SR F +F G W++Q +SR  RP P    + Y+TKLFY V I+P GPVPVL LEW+I  +VP NL+G+K A+E                         LD   G                PRG      +W+ +ETL+ Y+
Sbjct:  132 KIPVLIERPTMNSRRISASIVIDRPPEDVWSILTDYNNLATHVPNLVQSRLLDRPGGGLRLYQEGAQKIIGFDFSASLVMDMEEVL-DSRAGSSKKAIQFKLVESRFFSEFDGIWQLQVHSR--RPIPGTNTFTYTTKLFYEVFIRPNGPVPVLPLEWRIREDVPTNLRGVKTASER------------------------LDAPGG-------------PMQPRGTTTPVVDWEAEETLQLYM 335
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BLAST of mRNA_H-elongata_contig1647.4080.1 vs. uniprot
Match: A0A7R9YDQ6_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YDQ6_9STRA)

HSP 1 Score: 172 bits (435), Expect = 2.470e-44
Identity = 108/260 (41.54%), Postives = 153/260 (58.85%), Query Frame = 3 
Query:  705 GKRTKGNEVTVNIERPGINSRRISGSIVINRPIEVVWLTLTDYNRLAEYVPNLTQSTVRGSDDGTIRLWQEGAQKIVGFDFRASVEMFMDEHFGDPENKTAQRK-LTFGLLKSRMFQDFFGEWRMQFNSRKQRPGPQERE----YEYSTKLFYMVNIKPKGPVPVLALEWQISNEVPNNLKGLKRAAESATPEYVEMRRKERNEFEEINISQGLDRENGCDDDQTTAKVGAEAFVPRGNDIARPEW--DTDETLEAYIAK 1463
            G+ +K +EV V IER   N RRISG+ V++  ++ VW  LTDY+ LA++VPNLTQS       G IRL+QEGAQKIVGF+FRAS+ M M     D +   A+++ + F L++S+MF+DF GEWR++  SRK++  P        Y YST +FY V IKP+G VPV ALEW+I  +VP N+  +K+A+E    E +  R++ R    E+                       E   P+    A+ +W  + DETLEAY+A+
Sbjct:   59 GRSSKDSEVVVTIERLASNIRRISGTCVVDSSVDDVWAILTDYDNLADHVPNLTQSRRLNHPQGGIRLFQEGAQKIVGFNFRASLTMDMTVKIDDDKADAARKRAIGFELVESQMFKDFSGEWRLEPFSRKKKRDPVSGNVIPGYTYSTMMFYTVTIKPRGVVPVGALEWRIKEDVPTNMLAVKKASEEKG-ELIRTRQEARLAAAELE----------------------EQMKPKR--AAKSQWAFEADETLEAYMAR 293
[Close]
BLAST of mRNA_H-elongata_contig1647.4080.1 vs. uniprot
Match: A0A7S3T1R0_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3T1R0_EMIHU)

HSP 1 Score: 160 bits (406), Expect = 8.100e-41
Identity = 89/177 (50.28%), Postives = 118/177 (66.67%), Query Frame = 3 
Query:  729 VTVNIERPGINSRRISGSIVINRPIEVVWLTLTDYNRLAEYVPNLTQSTVRGSDDGTIRLWQEGAQKIVGFDFRASVEMFMDEHFGDPENKTAQ--RKLTFGLLKSRMFQDFFGEWRMQFNSRKQRPGPQEREYEYSTKLFYMVNIKPKGPVPVLALEWQISNEVPNNLKGLKRAAE 1253
            V V+I   G NSR IS SIV++ P E VW  LTDY+ L+ +VPNL  S +R    G IRL+QEGAQ+IVGFDFRAS+ M M E  G  + + A+  R++ F L++S MF  F GEWR+Q  SR +  G     +EY+T+L Y V+I P+G VPV ALEW+I  +VP NL+ ++ AAE
Sbjct:   74 VPVSISTTGFNSRCISASIVVSAPPEAVWAILTDYDNLSTHVPNLVSSELRPHPTGGIRLFQEGAQRIVGFDFRASLTMDMTERKGGNDAREARGMRRIEFSLIESAMFGAFEGEWRVQPYSRTRARGGSRDAFEYTTRLSYKVDITPRGLVPVPALEWRIREDVPLNLRAVRAAAE 250
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1647.4080.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J814_9PHAE4.120e-12564.72Polyketide_cyc domain-containing protein n=1 Tax=E... [more]
D7G841_ECTSI7.650e-11370.04Polyketide_cyc domain-containing protein n=1 Tax=E... [more]
A0A835ZJC3_9STRA6.850e-7751.24Polyketide_cyc domain-containing protein n=1 Tax=T... [more]
A0A4D9CWA6_9STRA1.670e-5343.73Polyketide_cyc domain-containing protein n=1 Tax=N... [more]
W7TTP4_9STRA3.500e-5345.63START-like domain protein n=1 Tax=Nannochloropsis ... [more]
A0A6V1KTJ0_HETAK2.530e-4952.31Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A0G4H7W0_VITBC2.930e-4745.45Polyketide_cyc domain-containing protein n=1 Tax=V... [more]
A0A7S2SEL4_9STRA3.130e-4543.03Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7R9YDQ6_9STRA2.470e-4441.54Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S3T1R0_EMIHU8.100e-4150.28Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1647contigH-elongata_contig1647:1226..6245 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score356.7
Seed ortholog evalue1.3e-95
Seed eggNOG ortholog2880.D7G841
EggNOG free text desc.Polyketide cyclase / dehydrase and lipid transport
EggNOG OGs2CXIA@1,2RXSU@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionStreptomyces cyclase/dehydrase
Ec32 orthologEc-12_001590.1
Exons7
Model size2472
Cds size1128
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929963.2171993-UTR-H-elongata_contig1647:1225..22281622929963.2171993-UTR-H-elongata_contig1647:1225..2228Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1647 1226..2228 -
1691679225.7158937-UTR-H-elongata_contig1647:1225..22281691679225.7158937-UTR-H-elongata_contig1647:1225..2228Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1647 1226..2228 -
1622929963.348667-UTR-H-elongata_contig1647:5904..62451622929963.348667-UTR-H-elongata_contig1647:5904..6245Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1647 5905..6245 -
1691679225.786462-UTR-H-elongata_contig1647:5904..62451691679225.786462-UTR-H-elongata_contig1647:5904..6245Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1647 5905..6245 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929963.240662-CDS-H-elongata_contig1647:2228..24201622929963.240662-CDS-H-elongata_contig1647:2228..2420Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1647 2229..2420 -
1691679225.727762-CDS-H-elongata_contig1647:2228..24201691679225.727762-CDS-H-elongata_contig1647:2228..2420Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1647 2229..2420 -
1622929963.2571518-CDS-H-elongata_contig1647:2691..28741622929963.2571518-CDS-H-elongata_contig1647:2691..2874Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1647 2692..2874 -
1691679225.7364707-CDS-H-elongata_contig1647:2691..28741691679225.7364707-CDS-H-elongata_contig1647:2691..2874Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1647 2692..2874 -
1622929963.271359-CDS-H-elongata_contig1647:3124..32341622929963.271359-CDS-H-elongata_contig1647:3124..3234Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1647 3125..3234 -
1691679225.7469075-CDS-H-elongata_contig1647:3124..32341691679225.7469075-CDS-H-elongata_contig1647:3124..3234Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1647 3125..3234 -
1622929963.2901964-CDS-H-elongata_contig1647:3600..37781622929963.2901964-CDS-H-elongata_contig1647:3600..3778Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1647 3601..3778 -
1691679225.7548823-CDS-H-elongata_contig1647:3600..37781691679225.7548823-CDS-H-elongata_contig1647:3600..3778Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1647 3601..3778 -
1622929963.308228-CDS-H-elongata_contig1647:4084..41621622929963.308228-CDS-H-elongata_contig1647:4084..4162Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1647 4085..4162 -
1691679225.762059-CDS-H-elongata_contig1647:4084..41621691679225.762059-CDS-H-elongata_contig1647:4084..4162Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1647 4085..4162 -
1622929963.3238444-CDS-H-elongata_contig1647:4476..46201622929963.3238444-CDS-H-elongata_contig1647:4476..4620Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1647 4477..4620 -
1691679225.7695913-CDS-H-elongata_contig1647:4476..46201691679225.7695913-CDS-H-elongata_contig1647:4476..4620Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1647 4477..4620 -
1622929963.336657-CDS-H-elongata_contig1647:5661..59041622929963.336657-CDS-H-elongata_contig1647:5661..5904Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1647 5662..5904 -
1691679225.7779236-CDS-H-elongata_contig1647:5661..59041691679225.7779236-CDS-H-elongata_contig1647:5661..5904Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1647 5662..5904 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1647.4080.1prot_H-elongata_contig1647.4080.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig1647 2229..5904 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig1647.4080.1

>prot_H-elongata_contig1647.4080.1 ID=prot_H-elongata_contig1647.4080.1|Name=mRNA_H-elongata_contig1647.4080.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=376bp
MNPLFIRRTRRWDTKTKRCRRDSSSKYGSGVIMPRARVAFVTSAALLFSC
AWITGTPIVCSAFLVQAPSAVTSRCTCNSEQFYGVGRSNSLRRPLAQGTS
GATNPEWSDDLAGGFRMLWSGGKRTKGNEVTVNIERPGINSRRISGSIVI
NRPIEVVWLTLTDYNRLAEYVPNLTQSTVRGSDDGTIRLWQEGAQKIVGF
DFRASVEMFMDEHFGDPENKTAQRKLTFGLLKSRMFQDFFGEWRMQFNSR
KQRPGPQEREYEYSTKLFYMVNIKPKGPVPVLALEWQISNEVPNNLKGLK
RAAESATPEYVEMRRKERNEFEEINISQGLDRENGCDDDQTTAKVGAEAF
VPRGNDIARPEWDTDETLEAYIAKG*
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mRNA from alignment at H-elongata_contig1647:1226..6245-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig1647.4080.1 ID=mRNA_H-elongata_contig1647.4080.1|Name=mRNA_H-elongata_contig1647.4080.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=5020bp|location=Sequence derived from alignment at H-elongata_contig1647:1226..6245- (Himanthalia elongata Himel1 dioecious)
GCGAAAGCAAATTCTAAAACTTGCTCCCTGGAAGACTGGAACATAACATG
TCATGTTCAACCCTGTCACGTGACGAACTTCACCTTTAAGCAGTGAACTA
TCTATCCACCCTACTATTACCAAAAAGTCGGCGATCGAGAGCACCCCGAA
GACTCGAGCACCAACCACCTTCCCCGTTTTCTATACACGTTGTACCCAAA
CACGTACTAAGGGCACGCTCCGGTTATTCGATCATCCGGTCATCAACCTA
ACTTGCGCTGGGACTGTGACCCTCTTCGACTGTCTTCACAAAGCGTCCAC
TTGGACAATCTACACCCCTTACACGCACGAATCAGGGGTCGATGAATCCC
CTGTTCATTCGTCGCACGAGACGGTGGGATACAAAGACAAAGAGGTGCAG
AAGGGACAGCAGCAGCAAATACGGCAGCGGTGTCATAATGCCTCGTGCTC
GGGTCGCATTCGTGACCTCTGCTGCACTTCTGTTTTCCTGTGCATGGATA
ACGGGAACGCCGATCGTATGTTCGGCGTTTTTGGTGCAGGCGCCATCAGC
AGTAACGAGCCGCTGCACCTGCAATAGCGAACAGGTGGGTGACGAGGTTT
GTGCAACCGAATAGGGCCCGCAGGAATCCTCCTCCCATACACGTCATGCG
TACGTCTTTTTTTTTCCCCCTAAAAAACATATGAATTCTTACTACAAATC
GATCGGCTACTGTAATGTACCATGCACCGGAAAAACTATGGAGTTGTTGG
AGAAGCCTTCGCCTTCCGGACTTTCCCCTGTCCCAGTGGCACTTTAATTG
CAGTCGGATTTTGGACGTTTCCCTCTTCAGTAGTGTTTTCGGCATTGCCG
ATGGCCATTCGGAAGAGGCCAGTCAAGAGCGCATCTCAAGCTGGGTGTTG
AAGTATGGTCCGCCGTATTGTACTCGTAGTTTGCAACTAATGGTCCACTT
CTCCAGTTATAATTTAGAGGAGAGAGTGCTCAACCGGTTGGGCCGGCGTT
CAGCCAAAACGCTCCGGAAACGCCCTCATATCCTAGTTCCTTCAGCAGAT
ATATTTCTTCGTCATACGGAATTTTTGCGCTCCGTTTTTTTCTCAGCGTT
TGGCCATCCGAAGAGGGTGTTCAATGTTCGCCAGCTACTCATTCCCTTGA
GGGGGGAAACCCACTATAGAGTGCTGGCCTCCGCGCTCCCTTGTGCTCGT
CCTAACAACGCGTGCCTTGGCCCTCCTGTAAGAGGCGCTCTCTCTAAGTC
TCTTACAACATTACTATTAATGGAAAGCAGATATTTACTCCTTCGTTGCC
TACCTTCTATAGCGTTCGTATTTTGAAATTAAGAGGTGTTCCCGAATGCC
GGTACCTAACGCGGCCAGATATATACACTACCATTAATAATGCCTGTTTG
TGCGGTTGTTGTAGAGTACTCAAGGATACGAATCCGCCATGCTCCTCATA
ACCTTTTTGTTACGACGGCTTGCGGTTGACCAATCTTCTCGGAAAGCCAC
CGCTGCGGAGTTAGTTATATTAGTAAATATATATTTGATGTTTTTCATCG
TGGTGTGCGTTGCGTCGCCGCACTATCAAATAACTTTGGCCAACCTCCGC
TCCGCGAAAATACCAAAATATTCAGTTTTATGGTGTGGGCAGATCGAACA
GCTTGAGAAGACCATTAGCCCAGGGAACCTCAGGCGCCACAAACCCTGAA
TGGAGTGACGACCTCGCTGGGGGCTTCAGGATGCTCTGGTCTGGCGGTAA
ACGGACTAAAGGAAACGAGGCGCGTCGTGGACATGCATGTAGACGTATGC
GAAAACCTCCTTTTGCCTTCCGAGCGTCCGAATTTTGCCCTGACTCTTAT
CGGAATTCGCGAAGCAACATTTGGGCTAGTTGGATCTTATCACTCAGGAC
GCGCGTGAAATATCCCTCCGTAGAACATTGCGACCATCCTGCTTTTCTCT
TTCTATGTGTGGGATTAGAGGTAGGTTCTACGCGTGAGGAGGAGGGGAGG
GGGTGCTCCCTTGTCGACTCTTAGTTGGGTGGAAACCTAACATGCATCCA
CGTGCTCGTGCGTGCTCACGGGACGGACGGCAGGTGACCGTGAATATCGA
GCGACCGGGTATCAATTCCCGTCGCATCTCCGGGAGCATCGTGATCAATC
GTCCTATCGAGGTGGGCAAGCGAGACAATGATTGCACTCGGCGCGGTCTT
TTCTACGGCTCCTCAACACGGCGGCGATTGCCGCTGCCTTGTGCCCTAAA
AAGGATTGGCGAAATCGTTTTGAACACCGAAAATAGATCCCGTGTTATAA
TAGCAACATTCACGAGGTCGTTCTTGTTGGAGTTCTGCTCTTACGTGAGA
ACTGAGGAATCTACGCCCACCTAGATAAGGTAACACTGTTGTGCGCTCTT
TCTCCGGCCTCCCCATCTCCGCTTGCGACCGCCCTCGTGTGTCCGACTTC
TTGTGCTGAATGTCTAGGTTGTCTGGCTTACCTTGACGGACTACAACCGT
TTGGCGGAATACGTACCGAACTTAACCCAGAGCACGGTCCGTGGTAGTGA
CGACGGCACGATCAGGCTCTGGCAGGAAGGGGCGCAGAAAATCGTGGGAT
TCGATTTCCGAGCGTCCGTGGAGATGTTTATGGATGAGCACTTTGGTGAG
CGTCGCTAGGGGGCGGTTTCGCCATTGTGTGTTTACGTCTTTTGTGTATT
TGTTATTTTTATTACTATGTTAACCTTACGCCATCGTTTCATGCTCTCGA
CAATATCTTACGGTGTTGTGTACCCTCCCCCCGTCCGGCCAGATGTTGGA
TGTATGTAACGGTTGATCCTTGAAAATATTAGCGTCAGGTGTCGTCGCAG
CCGAAGCAATGTTGGTGTCGAGTTTGACTCGATCGTTGTGGCGTCAACTC
ATCGTGCGCACATGTTACCGCGTCTCAACTCGTGGTAAATGTATCGTTAC
TTTTTGTTGGGGGTTGTCGCATGTTGGATCCATTCTGCCTTTGCTATTTG
CCTTGCTACAGGCGATCCAGAAAACAAAACGGCGCAGAGAAAGCTAACGT
TCGGACTGCTGAAGTCGCGGATGTTCCAAGATTTTTTCGGAGAATGGAGG
ATGCAGTTCAACAGCCGTAAGGTGTGTGGAACACCCGAACTAATATTTAA
CGTAGGGAGCAGAGTGGTCGGTAAAGTTGGTACCCCGTGGCGGTGGTATG
CGCCAGCCAAACGGTGAATGACTCGAACGGCGTGTGCAAGGCGAATGTCG
GCCCGCCCATGTCCGCCAGGAGAGACAAGCTGAACGGCTCCGATGTACAG
GCAGTGCACCCCCTTCCAATCTTCATCCCCCCGCCCCCCAATCACGCCTC
CATGCGCGCGGGAAAATATAGCAACGCCCGGGTCCCCAAGAGCGGGAGTA
CGAATACTCTACAAAGCTGTTCTACATGGTAAACATCAAGCCCAAGGGGC
CTGTCCCAGTGCTTGCCCTTGAGTGGCAGATATCGAACGAGGTGCCGAAC
AACCTGAAGGGTCTCAAGCGAGCGGCAGAGTCGGCCACGCCAGAGTACGT
TGAGGTGAGAGGCGTCAGGCCGAAGCACGGAGATCTAGACGAACAAAACG
ACATGTGGCGCCATCCAAGTCGTCCGATAATACGAGCCCACATAATATCG
ATACCGCGATAGGAATATGAAAAGTTACGTTGTGTGTTGTGAGTTAATCC
GTAAAGCCCCGACCAAATAAAGGCCGGAATTTCGAGTTGCGAGTAGGCGC
CGTGTTGTTTTATAACCCACTCCACCCTCCTCTGCATTCTCCTCCATCTT
CCTCCCGACGCGACGCCCTGGCCAGATGCGGAGAAAGGAAAGAAATGAGT
TTGAAGAGATAAATATATCTCAAGGACTCGACAGGGAAAACGGTTGTGAT
GATGACCAGACGACTGCGAAAGTCGGAGCGGAGGCGTTCGTTCCAAGGGG
AAACGATATCGCCCGTCCGGAGTGGGACACCGACGAGACGCTGGAAGCTT
ACATTGCCAAGGGATGAGTGACCAAAGCGACCGCACGGCGTTGTATGGAT
TTATGCCCAGGTTCGTTGCGAAAATACGTGTTGGGTCTTGTCGAAGCATA
GGTTCCTCTGGTGTTGTGTCCTGATGTTTGGCTTAAAAGGAGATAGAGAG
CCCCGTACGAATATTGTTAGAGGAAACTAAAAGTCGATGTAGAAAGAGAC
GCGTGTTAAGTGGGCCAAGGCTCTGTCTGGAAGAATGCGGAGTGCGCCGG
TCAGCGACGTGTGACGCCGTCTTGAACGACGATCGACCAGTGCATCACCT
AGAGGGAGGACGAAGGATCTCCTGTGTATTGACAATATTATGTTTTTTTT
CGTAGGAGCGAGCGTGTTTACTTATTGTTTAAAGTATGTCGTTTGATTCT
TGGTGTGGTAGCCGCGGAACGCCGTGCATGGTGTTGGGGGAAGAGTAGGG
CAGAGAGCGCAGCAAACTATAGCGCGCGTCAGAAGAAATGGAGGACATGA
TTGAATTTCCAGCCATGACGATATTTCGCTTGTCGAGCGAGGATAGCGGA
CGCCTCTTCACATACGCGCAAGTGATCTGTATAAAATTTTCTTGGGGTGC
TGAGTTGATATTTCGCCCGGAGGGGGTGGGCGTTGAAAAAAAACGGCAGA
GATGACGTGCCGCCGAAAAATTGCGTCTTCATATCTTAGCGCAGCCTCCC
GCTTCGGAGAGCTCTTTAATATGCTCTTGTATTGTTGATAACATCGACCA
CTGACCGCGGCACCACCAGAAGGGCCTAGCCCTAAATCCAAGCATTCGTT
GATTAGACTATCCCCCCTACTGGCTTCCGATGCCGCTTTCGCGCTATAGC
AGTTTAACTTACTATTAGTGTAGGTTCAAGAGCGAGAAACTGATTGACTC
AAAACCGTGACTGCCACCCTCTCCTGTTGCAGGCCTTGATTGTTATCCAA
ACACTCGCCATCACTCTATTAGCTAACCCCGTGTGACCTCCATGTTATAT
TCGCTGAAAAGCAATACCAG
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Coding sequence (CDS) from alignment at H-elongata_contig1647:1226..6245-

>mRNA_H-elongata_contig1647.4080.1 ID=mRNA_H-elongata_contig1647.4080.1|Name=mRNA_H-elongata_contig1647.4080.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2256bp|location=Sequence derived from alignment at H-elongata_contig1647:1226..6245- (Himanthalia elongata Himel1 dioecious)
ATGAATCCCCTGTTCATTCGTCGCACGAGACGGTGGGATACAAAGACAAA
GAGGTGCAGAAGGGACAGCAGCAGCAAATACGGCAGCGGTGTCATAATGC
CTCGTGCTCGGGTCGCATTCGTGACCTCTGCTGCACTTCTGTTTTCCTGT
GCATGGATAACGGGAACGCCGATCGTATGTTCGGCGTTTTTGGTGCAGGC
GCCATCAGCAGTAACGAGCCGCTGCACCTGCAATAGCGAACAGATGAATC
CCCTGTTCATTCGTCGCACGAGACGGTGGGATACAAAGACAAAGAGGTGC
AGAAGGGACAGCAGCAGCAAATACGGCAGCGGTGTCATAATGCCTCGTGC
TCGGGTCGCATTCGTGACCTCTGCTGCACTTCTGTTTTCCTGTGCATGGA
TAACGGGAACGCCGATCGTATGTTCGGCGTTTTTGGTGCAGGCGCCATCA
GCAGTAACGAGCCGCTGCACCTGCAATAGCGAACAGTTTTATGGTGTGGG
CAGATCGAACAGCTTGAGAAGACCATTAGCCCAGGGAACCTCAGGCGCCA
CAAACCCTGAATGGAGTGACGACCTCGCTGGGGGCTTCAGGATGCTCTGG
TCTGGCGGTAAACGGACTAAAGGAAACGAGTTTTATGGTGTGGGCAGATC
GAACAGCTTGAGAAGACCATTAGCCCAGGGAACCTCAGGCGCCACAAACC
CTGAATGGAGTGACGACCTCGCTGGGGGCTTCAGGATGCTCTGGTCTGGC
GGTAAACGGACTAAAGGAAACGAGGTGACCGTGAATATCGAGCGACCGGG
TATCAATTCCCGTCGCATCTCCGGGAGCATCGTGATCAATCGTCCTATCG
AGGTGACCGTGAATATCGAGCGACCGGGTATCAATTCCCGTCGCATCTCC
GGGAGCATCGTGATCAATCGTCCTATCGAGGTTGTCTGGCTTACCTTGAC
GGACTACAACCGTTTGGCGGAATACGTACCGAACTTAACCCAGAGCACGG
TCCGTGGTAGTGACGACGGCACGATCAGGCTCTGGCAGGAAGGGGCGCAG
AAAATCGTGGGATTCGATTTCCGAGCGTCCGTGGAGATGTTTATGGATGA
GCACTTTGGTTGTCTGGCTTACCTTGACGGACTACAACCGTTTGGCGGAA
TACGTACCGAACTTAACCCAGAGCACGGTCCGTGGTAGTGACGACGGCAC
GATCAGGCTCTGGCAGGAAGGGGCGCAGAAAATCGTGGGATTCGATTTCC
GAGCGTCCGTGGAGATGTTTATGGATGAGCACTTTGGCGATCCAGAAAAC
AAAACGGCGCAGAGAAAGCTAACGTTCGGACTGCTGAAGTCGCGGATGTT
CCAAGATTTTTTCGGAGAATGGAGGATGCAGTTCAACAGCCGTAAGGCGA
TCCAGAAAACAAAACGGCGCAGAGAAAGCTAACGTTCGGACTGCTGAAGT
CGCGGATGTTCCAAGATTTTTTCGGAGAATGGAGGATGCAGTTCAACAGC
CGTAAGCAACGCCCGGGTCCCCAAGAGCGGGAGTACGAATACTCTACAAA
GCTGTTCTACATGGTAAACATCAAGCCCAAGGGGCCTGTCCCAGTGCTTG
CCCTTGAGTGGCAGATATCGAACGAGGTGCCGAACAACCTGAAGGGTCTC
AAGCGAGCGGCAGAGTCGGCCACGCCAGAGTACGTTGAGCAACGCCCGGG
TCCCCAAGAGCGGGAGTACGAATACTCTACAAAGCTGTTCTACATGGTAA
ACATCAAGCCCAAGGGGCCTGTCCCAGTGCTTGCCCTTGAGTGGCAGATA
TCGAACGAGGTGCCGAACAACCTGAAGGGTCTCAAGCGAGCGGCAGAGTC
GGCCACGCCAGAGTACGTTGAGATGCGGAGAAAGGAAAGAAATGAGTTTG
AAGAGATAAATATATCTCAAGGACTCGACAGGGAAAACGGTTGTGATGAT
GACCAGACGACTGCGAAAGTCGGAGCGGAGGCGTTCGTTCCAAGGGGAAA
CGATATCGCCCGTCCGGAGTGGGACACCGACGAGACGCTGGAAGCTTACA
TTGCCAAGGGATGAATGCGGAGAAAGGAAAGAAATGAGTTTGAAGAGATA
AATATATCTCAAGGACTCGACAGGGAAAACGGTTGTGATGATGACCAGAC
GACTGCGAAAGTCGGAGCGGAGGCGTTCGTTCCAAGGGGAAACGATATCG
CCCGTCCGGAGTGGGACACCGACGAGACGCTGGAAGCTTACATTGCCAAG
GGATGA
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