mRNA_H-elongata_contig164645.4077.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig164645.4077.1
Unique NamemRNA_H-elongata_contig164645.4077.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig164645.4077.1 vs. uniprot
Match: A0A6H5JZU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZU3_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 1.800e-10
Identity = 46/130 (35.38%), Postives = 70/130 (53.85%), Query Frame = 3 
Query:    3 GGEDTYISQATFLMKELMEIMNTECLQIRV--------PDKPGMNPVPYEQVNKS-------------ELFPEVETAVEVYREVMEEKDLGRALNPTERISVFLDPRRKIISENDCIGGGNALQTMAISD 329
            G  DT++SQATF++ E+++++ T+   IRV        P   G+ P   E  N+S             +L  E +  V+V  EVM+EK +G+AL   ER+SV LDPRRK + +     G + L+T A +D
Sbjct:  332 GATDTHLSQATFIINEVIDMLTTDYHPIRVESAIVTPPPPAAGIIPTEGEGQNESSLDGISTAETQVTDLTLEAQDVVQVLLEVMDEKGVGKALQWVERLSVLLDPRRKTLDDTHLRNGSSDLKTQAEAD 461
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BLAST of mRNA_H-elongata_contig164645.4077.1 vs. uniprot
Match: A0A6H5KDJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDJ6_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 4.850e-9
Identity = 44/129 (34.11%), Postives = 65/129 (50.39%), Query Frame = 3 
Query:    3 GGEDTYISQATFLMKELMEIMNTECLQIRV------PDKPGMNPVPYEQ--------------VNKSELFPEVETAVEVYREVMEEKDLGRALNPTERISVFLDPRRKIISENDCIGGGNALQTMAISD 329
            G +DT+ISQA FL+ E+ME++  E   IR       P  P ++ +P E+              ++  +L  E +   +V  EVMEEK +G+AL   ER+S  LDPRRK +       G   L+  A +D
Sbjct:  186 GAQDTHISQAMFLIHEVMEMLKDETHPIRTANAIVTPPPPALDVIPTEEEENQPQKGGVSTEDIHVEDLTTEAQGVRKVLLEVMEEKGVGKALQRVERLSALLDPRRKDLDATQVGNGDEDLRIAAEAD 314
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BLAST of mRNA_H-elongata_contig164645.4077.1 vs. uniprot
Match: A0A6H5KAN7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAN7_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 1.220e-8
Identity = 32/75 (42.67%), Postives = 46/75 (61.33%), Query Frame = 1 
Query:  370 LRQELTNCREQNVEADVCGFSLPGFWLRKSESTLAQSTSELVAPPDLPHLALLTRLYHGVEETSCKAEHNFSSLS 594
            + +EL     ++   +   FSL  FW R+S+      T E+   P LPHLAL+ RL+HG+E TSC+AE NFS+L+
Sbjct:  367 VERELRMYLAEDPAEEEYDFSLLEFWQRRSKPRTCAETGEV--EPGLPHLALIARLFHGIESTSCQAERNFSALA 439
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BLAST of mRNA_H-elongata_contig164645.4077.1 vs. uniprot
Match: A0A6H5KJ52_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ52_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 1.380e-8
Identity = 32/75 (42.67%), Postives = 46/75 (61.33%), Query Frame = 1 
Query:  370 LRQELTNCREQNVEADVCGFSLPGFWLRKSESTLAQSTSELVAPPDLPHLALLTRLYHGVEETSCKAEHNFSSLS 594
            + +EL     ++   +   FSL  FW R+S+      T E+   P LPHLAL+ RL+HG+E TSC+AE NFS+L+
Sbjct:  695 VERELRMYLAEDPAEEEYDFSLLEFWQRRSKPRTCAETGEV--EPGLPHLALIARLFHGIESTSCQAERNFSALA 767
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BLAST of mRNA_H-elongata_contig164645.4077.1 vs. uniprot
Match: A0A6H5JRT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT6_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 3.340e-8
Identity = 38/109 (34.86%), Postives = 58/109 (53.21%), Query Frame = 3 
Query:    3 GGEDTYISQATFLMKELMEIMNTECLQIRVPDKPGMNPVPYEQVNKSELFPEVETAVEVYREVMEEKDLGRALNPTERISVFLDPRRKIISENDCIGGGNALQTMAISD 329
            G +DT+ISQA F++ E+ME++  +   IR       N    E++   EL    +  +EV  +VMEEK +G+A+   ER+S  +DPRRK +       G   L+  A  D
Sbjct:  516 GAKDTHISQAMFIIHEVMEMLREDSHPIR-----AQNATEPEEMQVLELSSAAQGVLEVLLDVMEEKQVGKAVQQVERLSALMDPRRKSLDGAKLENGSATLRKKAEED 619
[Close]
BLAST of mRNA_H-elongata_contig164645.4077.1 vs. uniprot
Match: A0A6H5JQI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQI6_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 2.650e-7
Identity = 39/109 (35.78%), Postives = 60/109 (55.05%), Query Frame = 3 
Query:    3 GGEDTYISQATFLMKELMEIMNTECLQIRVPDKPGMNPVPYEQVNKSELFPEVETAVEVYREVMEEKDLGRALNPTERISVFLDPRRKIISENDCIGGGNALQTMAISD 329
            G  +T++SQATF++ E  E  N   L          + +  E+   + L  E +  V+V RE+M+EK +G+AL   ER+SV LDPRRK + +     G + L+T A +D
Sbjct:  332 GATETHLSQATFIINE-GEGQNESSL----------DGISTEETQVTGLTLEAQDVVQVLREMMDEKGVGKALQRVERLSVLLDPRRKTLDDTHLRNGSSDLKTQAEAD 429
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig164645.4077.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JZU3_9PHAE1.800e-1035.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDJ6_9PHAE4.850e-934.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAN7_9PHAE1.220e-842.67Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KJ52_9PHAE1.380e-842.67Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JRT6_9PHAE3.340e-834.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQI6_9PHAE2.650e-735.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig164645contigH-elongata_contig164645:510..1311 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size595
Cds size348
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig164645.4077.1prot_H-elongata_contig164645.4077.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig164645 551..1105 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929962.702315-UTR-H-elongata_contig164645:509..5501622929962.702315-UTR-H-elongata_contig164645:509..550Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig164645 510..550 +
1691679225.4771798-UTR-H-elongata_contig164645:509..5501691679225.4771798-UTR-H-elongata_contig164645:509..550Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig164645 510..550 +
1622929962.7872455-UTR-H-elongata_contig164645:1105..13111622929962.7872455-UTR-H-elongata_contig164645:1105..1311Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig164645 1106..1311 +
1691679225.5184562-UTR-H-elongata_contig164645:1105..13111691679225.5184562-UTR-H-elongata_contig164645:1105..1311Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig164645 1106..1311 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929962.7205353-CDS-H-elongata_contig164645:550..8381622929962.7205353-CDS-H-elongata_contig164645:550..838Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig164645 551..838 +
1691679225.4855764-CDS-H-elongata_contig164645:550..8381691679225.4855764-CDS-H-elongata_contig164645:550..838Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig164645 551..838 +
1622929962.761705-CDS-H-elongata_contig164645:1045..11051622929962.761705-CDS-H-elongata_contig164645:1045..1105Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig164645 1046..1105 +
1691679225.494609-CDS-H-elongata_contig164645:1045..11051691679225.494609-CDS-H-elongata_contig164645:1045..1105Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig164645 1046..1105 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig164645.4077.1

>prot_H-elongata_contig164645.4077.1 ID=prot_H-elongata_contig164645.4077.1|Name=mRNA_H-elongata_contig164645.4077.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=116bp
MKELMEIMNTECLQIRVPDKPGMNPVPYEQVNKSELFPEVETAVEVYREV
MEEKDLGRALNPTERISVFLDPRRKIISENDCIGGGNALQTMAISDGEGG
GTAYNSPRRPSTRTN*
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mRNA from alignment at H-elongata_contig164645:510..1311+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig164645.4077.1 ID=mRNA_H-elongata_contig164645.4077.1|Name=mRNA_H-elongata_contig164645.4077.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=802bp|location=Sequence derived from alignment at H-elongata_contig164645:510..1311+ (Himanthalia elongata Himel1 dioecious)
AAGGAGGTGAGGACACGTACATCAGCCAGGCGACCTTCCTGATGAAGGAA
CTGATGGAGATCATGAACACTGAGTGTCTTCAGATCAGGGTTCCAGACAA
GCCAGGCATGAATCCCGTACCATACGAACAAGTAAACAAATCTGAGCTTT
TTCCGGAGGTTGAAACGGCGGTCGAGGTCTATAGAGAAGTAATGGAGGAA
AAGGACCTGGGTAGGGCTTTAAACCCAACTGAGCGCATCAGCGTCTTTCT
CGATCCGAGAAGGAAAATCATATCCGAGAACGATTGCATTGGCGGTGGCA
ATGCGCTTCAGACGATGGCAATTTCGGACGTCGAAGAGCTCGACCATCAC
TTCGTCGGGAACGTCGCGCAGAATTCTAGCAGGACAGCAGCCCCTGCACC
AGTTCTAGCTCCTGGGCCAGCTCCCGGTTTGGCGACTCCAGCCATAACTT
TGCCTCGGGTTTCTTCAGTAATGGAGCAAAGACGCCTGGCCCGATTGGCT
GCAACTGGACATGAAAGTAGTTCACATCGGGCACAGGGAGAGGGGGGGGG
TACAGCCTATAACTCACCACGTCGCCCTTCGACAAGAACTAACTAACTGT
CGAGAGCAAAACGTCGAGGCAGACGTGTGCGGCTTTTCGCTGCCAGGTTT
TTGGCTCCGCAAGAGCGAGTCGACGCTTGCTCAGAGCACGAGCGAGCTTG
TGGCGCCACCGGATCTGCCCCATCTAGCACTCCTTACTCGTCTTTACCAC
GGGGTCGAAGAGACCAGTTGCAAAGCGGAGCACAACTTTTCTTCGCTGTC
GG
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Coding sequence (CDS) from alignment at H-elongata_contig164645:510..1311+

>mRNA_H-elongata_contig164645.4077.1 ID=mRNA_H-elongata_contig164645.4077.1|Name=mRNA_H-elongata_contig164645.4077.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=696bp|location=Sequence derived from alignment at H-elongata_contig164645:510..1311+ (Himanthalia elongata Himel1 dioecious)
ATGAAGGAACTGATGGAGATCATGAACACTGAGTGTCTTCAGATCAGGGT
TCCAGACAAGCCAGGCATGAATCCCGTACCATACGAACAAGTAAACAAAT
CTGAGCTTTTTCCGGAGGTTGAAACGGCGGTCGAGGTCTATAGAGAAGTA
ATGGAGGAAAAGGACCTGGGTAGGGCTTTAAACCCAACTGAGCGCATCAG
CGTCTTTCTCGATCCGAGAAGGAAAATCATATCCGAGAACGATTGCATTG
GCGGTGGCAATGCGCTTCAGACGATGGCAATTTCGGACATGAAGGAACTG
ATGGAGATCATGAACACTGAGTGTCTTCAGATCAGGGTTCCAGACAAGCC
AGGCATGAATCCCGTACCATACGAACAAGTAAACAAATCTGAGCTTTTTC
CGGAGGTTGAAACGGCGGTCGAGGTCTATAGAGAAGTAATGGAGGAAAAG
GACCTGGGTAGGGCTTTAAACCCAACTGAGCGCATCAGCGTCTTTCTCGA
TCCGAGAAGGAAAATCATATCCGAGAACGATTGCATTGGCGGTGGCAATG
CGCTTCAGACGATGGCAATTTCGGACGGAGAGGGGGGGGGTACAGCCTAT
AACTCACCACGTCGCCCTTCGACAAGAACTAACTAAGGAGAGGGGGGGGG
TACAGCCTATAACTCACCACGTCGCCCTTCGACAAGAACTAACTAA
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