mRNA_H-elongata_contig16464.4076.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig16464.4076.1 vs. uniprot
Match: A0A6H5JXE6_9PHAE (Calcium-transporting ATPase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JXE6_9PHAE) HSP 1 Score: 80.1 bits (196), Expect = 2.890e-16 Identity = 37/48 (77.08%), Postives = 42/48 (87.50%), Query Frame = 1
Query: 10 SILFNVFVFCQVFNEFNSRSIFDEWNVFRGLSKNPLFIAIIVVTVALQ 153
+ILFN FVFCQVFNE N+RSIFD+WN+FRGL NPLF A+IVVTV LQ
Sbjct: 997 TILFNAFVFCQVFNELNARSIFDDWNIFRGLHNNPLFAAVIVVTVILQ 1044
BLAST of mRNA_H-elongata_contig16464.4076.1 vs. uniprot
Match: A0A482SMB8_9ARCH (Cation_ATPase_C domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SMB8_9ARCH) HSP 1 Score: 70.5 bits (171), Expect = 1.620e-13 Identity = 26/49 (53.06%), Postives = 41/49 (83.67%), Query Frame = 1
Query: 10 SILFNVFVFCQVFNEFNSRSIFDEWNVFRGLSKNPLFIAIIVVTVALQV 156
+++FN F+FCQVFNE+N+RSIFD+WN+F ++KNP FI + ++T+ Q+
Sbjct: 141 TLIFNTFIFCQVFNEYNARSIFDDWNMFANINKNPTFIMVTIITIGFQI 189
BLAST of mRNA_H-elongata_contig16464.4076.1 vs. uniprot
Match: A0A812PEW5_9DINO (ATP2B3 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812PEW5_9DINO) HSP 1 Score: 71.6 bits (174), Expect = 2.770e-13 Identity = 33/47 (70.21%), Postives = 39/47 (82.98%), Query Frame = 1
Query: 16 LFNVFVFCQVFNEFNSRSIFDEWNVFRGLSKNPLFIAIIVVTVALQV 156
LFN FVFCQ+FNEFN+RSI DEWNV+ GL N LFI +IV+T+ LQV
Sbjct: 1011 LFNAFVFCQLFNEFNARSIGDEWNVYAGLETNMLFIGVIVITIILQV 1057
BLAST of mRNA_H-elongata_contig16464.4076.1 vs. uniprot
Match: A0A482SEH8_9ARCH (HAD family hydrolase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SEH8_9ARCH) HSP 1 Score: 70.1 bits (170), Expect = 9.640e-13 Identity = 27/49 (55.10%), Postives = 40/49 (81.63%), Query Frame = 1
Query: 10 SILFNVFVFCQVFNEFNSRSIFDEWNVFRGLSKNPLFIAIIVVTVALQV 156
+I+FN F+F QVFNE+N+RSIFDEWN+F G+ NP+FI + ++T+ Q+
Sbjct: 687 TIIFNTFIFAQVFNEYNARSIFDEWNMFHGIEHNPVFIVVTIITIGFQI 735
BLAST of mRNA_H-elongata_contig16464.4076.1 vs. uniprot
Match: A0A835ZDK6_9STRA (Calcium-transporting ATPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDK6_9STRA) HSP 1 Score: 70.1 bits (170), Expect = 9.650e-13 Identity = 30/49 (61.22%), Postives = 41/49 (83.67%), Query Frame = 1
Query: 10 SILFNVFVFCQVFNEFNSRSIFDEWNVFRGLSKNPLFIAIIVVTVALQV 156
S++FN FVF Q+ NEFN+RSI DEWN+ RG+ NP+FIAII++T+ LQ+
Sbjct: 1059 SLIFNTFVFAQIANEFNARSIGDEWNILRGIGGNPMFIAIILITIGLQI 1107
BLAST of mRNA_H-elongata_contig16464.4076.1 vs. uniprot
Match: A8UMT8_BRAJU (Calcium-transporting ATPase (Fragment) n=1 Tax=Brassica juncea TaxID=3707 RepID=A8UMT8_BRAJU) HSP 1 Score: 65.9 bits (159), Expect = 2.670e-12 Identity = 34/52 (65.38%), Postives = 42/52 (80.77%), Query Frame = 1
Query: 1 VARSILFNVFVFCQVFNEFNSRSIFDEWNVFRGLSKNPLFIAIIVVTVALQV 156
V +++FN FV CQVFNEFN+RS+ ++ NVFRGL KN LF+ IIVVTV LQV
Sbjct: 66 VKNTLIFNTFVLCQVFNEFNARSL-EKKNVFRGLHKNRLFVGIIVVTVVLQV 116
BLAST of mRNA_H-elongata_contig16464.4076.1 vs. uniprot
Match: A0A2J6JGU3_LACSA (Calcium-transporting ATPase n=3 Tax=Lactuca TaxID=4235 RepID=A0A2J6JGU3_LACSA) HSP 1 Score: 67.4 bits (163), Expect = 8.590e-12 Identity = 35/52 (67.31%), Postives = 43/52 (82.69%), Query Frame = 1
Query: 1 VARSILFNVFVFCQVFNEFNSRSIFDEWNVFRGLSKNPLFIAIIVVTVALQV 156
V +I+FN FVFCQVFNEFNSR + ++ NVF+GL KN LF+ IIVVTVALQ+
Sbjct: 866 VKNTIIFNTFVFCQVFNEFNSRKL-EKRNVFQGLHKNRLFMGIIVVTVALQI 916
BLAST of mRNA_H-elongata_contig16464.4076.1 vs. uniprot
Match: A0A150H159_GONPE (Calcium-transporting ATPase n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150H159_GONPE) HSP 1 Score: 66.6 bits (161), Expect = 1.600e-11 Identity = 28/51 (54.90%), Postives = 40/51 (78.43%), Query Frame = 1
Query: 4 ARSILFNVFVFCQVFNEFNSRSIFDEWNVFRGLSKNPLFIAIIVVTVALQV 156
A S+LFN F+FCQ+FNE N+R I DE+++F GL NP+F+ +I++TV QV
Sbjct: 858 ALSVLFNAFIFCQIFNEINARRINDEYSIFAGLFTNPIFVGVIIITVCFQV 908
BLAST of mRNA_H-elongata_contig16464.4076.1 vs. uniprot
Match: UPI0006AA9421 (calcium-transporting ATPase 9, plasma membrane-type-like n=1 Tax=Brassica napus TaxID=3708 RepID=UPI0006AA9421) HSP 1 Score: 63.5 bits (153), Expect = 2.450e-11 Identity = 31/52 (59.62%), Postives = 40/52 (76.92%), Query Frame = 1
Query: 1 VARSILFNVFVFCQVFNEFNSRSIFDEWNVFRGLSKNPLFIAIIVVTVALQV 156
V +++FN FV CQ+FNEFN+R DE NVF G+SKNPLF+AI+ VT LQ+
Sbjct: 36 VKNTMIFNAFVMCQIFNEFNARKP-DEMNVFSGVSKNPLFVAIVGVTFVLQI 86
BLAST of mRNA_H-elongata_contig16464.4076.1 vs. uniprot
Match: A0A398ASS2_BRACM (Cation_ATPase_N domain-containing protein n=2 Tax=Brassica campestris TaxID=3711 RepID=A0A398ASS2_BRACM) HSP 1 Score: 65.9 bits (159), Expect = 2.990e-11 Identity = 34/52 (65.38%), Postives = 42/52 (80.77%), Query Frame = 1
Query: 1 VARSILFNVFVFCQVFNEFNSRSIFDEWNVFRGLSKNPLFIAIIVVTVALQV 156
V +++FN FV CQVFNEFN+RS+ ++ NVFRGL KN LF+ IIVVTV LQV
Sbjct: 510 VKNTLIFNTFVLCQVFNEFNARSL-EKKNVFRGLHKNRLFVGIIVVTVVLQV 560 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16464.4076.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig16464.4076.1 >prot_H-elongata_contig16464.4076.1 ID=prot_H-elongata_contig16464.4076.1|Name=mRNA_H-elongata_contig16464.4076.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=52bp VARSILFNVFVFCQVFNEFNSRSIFDEWNVFRGLSKNPLFIAIIVVTVALback to top mRNA from alignment at H-elongata_contig16464:7408..7563+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig16464.4076.1 ID=mRNA_H-elongata_contig16464.4076.1|Name=mRNA_H-elongata_contig16464.4076.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=156bp|location=Sequence derived from alignment at H-elongata_contig16464:7408..7563+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig16464:7408..7563+ >mRNA_H-elongata_contig16464.4076.1 ID=mRNA_H-elongata_contig16464.4076.1|Name=mRNA_H-elongata_contig16464.4076.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=312bp|location=Sequence derived from alignment at H-elongata_contig16464:7408..7563+ (Himanthalia elongata Himel1 dioecious)back to top |