mRNA_H-elongata_contig16464.4076.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig16464.4076.1
Unique NamemRNA_H-elongata_contig16464.4076.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig16464.4076.1 vs. uniprot
Match: A0A6H5JXE6_9PHAE (Calcium-transporting ATPase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JXE6_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 2.890e-16
Identity = 37/48 (77.08%), Postives = 42/48 (87.50%), Query Frame = 1
Query:   10 SILFNVFVFCQVFNEFNSRSIFDEWNVFRGLSKNPLFIAIIVVTVALQ 153
            +ILFN FVFCQVFNE N+RSIFD+WN+FRGL  NPLF A+IVVTV LQ
Sbjct:  997 TILFNAFVFCQVFNELNARSIFDDWNIFRGLHNNPLFAAVIVVTVILQ 1044          
BLAST of mRNA_H-elongata_contig16464.4076.1 vs. uniprot
Match: A0A482SMB8_9ARCH (Cation_ATPase_C domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SMB8_9ARCH)

HSP 1 Score: 70.5 bits (171), Expect = 1.620e-13
Identity = 26/49 (53.06%), Postives = 41/49 (83.67%), Query Frame = 1
Query:   10 SILFNVFVFCQVFNEFNSRSIFDEWNVFRGLSKNPLFIAIIVVTVALQV 156
            +++FN F+FCQVFNE+N+RSIFD+WN+F  ++KNP FI + ++T+  Q+
Sbjct:  141 TLIFNTFIFCQVFNEYNARSIFDDWNMFANINKNPTFIMVTIITIGFQI 189          
BLAST of mRNA_H-elongata_contig16464.4076.1 vs. uniprot
Match: A0A812PEW5_9DINO (ATP2B3 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812PEW5_9DINO)

HSP 1 Score: 71.6 bits (174), Expect = 2.770e-13
Identity = 33/47 (70.21%), Postives = 39/47 (82.98%), Query Frame = 1
Query:   16 LFNVFVFCQVFNEFNSRSIFDEWNVFRGLSKNPLFIAIIVVTVALQV 156
            LFN FVFCQ+FNEFN+RSI DEWNV+ GL  N LFI +IV+T+ LQV
Sbjct: 1011 LFNAFVFCQLFNEFNARSIGDEWNVYAGLETNMLFIGVIVITIILQV 1057          
BLAST of mRNA_H-elongata_contig16464.4076.1 vs. uniprot
Match: A0A482SEH8_9ARCH (HAD family hydrolase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SEH8_9ARCH)

HSP 1 Score: 70.1 bits (170), Expect = 9.640e-13
Identity = 27/49 (55.10%), Postives = 40/49 (81.63%), Query Frame = 1
Query:   10 SILFNVFVFCQVFNEFNSRSIFDEWNVFRGLSKNPLFIAIIVVTVALQV 156
            +I+FN F+F QVFNE+N+RSIFDEWN+F G+  NP+FI + ++T+  Q+
Sbjct:  687 TIIFNTFIFAQVFNEYNARSIFDEWNMFHGIEHNPVFIVVTIITIGFQI 735          
BLAST of mRNA_H-elongata_contig16464.4076.1 vs. uniprot
Match: A0A835ZDK6_9STRA (Calcium-transporting ATPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDK6_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 9.650e-13
Identity = 30/49 (61.22%), Postives = 41/49 (83.67%), Query Frame = 1
Query:   10 SILFNVFVFCQVFNEFNSRSIFDEWNVFRGLSKNPLFIAIIVVTVALQV 156
            S++FN FVF Q+ NEFN+RSI DEWN+ RG+  NP+FIAII++T+ LQ+
Sbjct: 1059 SLIFNTFVFAQIANEFNARSIGDEWNILRGIGGNPMFIAIILITIGLQI 1107          
BLAST of mRNA_H-elongata_contig16464.4076.1 vs. uniprot
Match: A8UMT8_BRAJU (Calcium-transporting ATPase (Fragment) n=1 Tax=Brassica juncea TaxID=3707 RepID=A8UMT8_BRAJU)

HSP 1 Score: 65.9 bits (159), Expect = 2.670e-12
Identity = 34/52 (65.38%), Postives = 42/52 (80.77%), Query Frame = 1
Query:    1 VARSILFNVFVFCQVFNEFNSRSIFDEWNVFRGLSKNPLFIAIIVVTVALQV 156
            V  +++FN FV CQVFNEFN+RS+ ++ NVFRGL KN LF+ IIVVTV LQV
Sbjct:   66 VKNTLIFNTFVLCQVFNEFNARSL-EKKNVFRGLHKNRLFVGIIVVTVVLQV 116          
BLAST of mRNA_H-elongata_contig16464.4076.1 vs. uniprot
Match: A0A2J6JGU3_LACSA (Calcium-transporting ATPase n=3 Tax=Lactuca TaxID=4235 RepID=A0A2J6JGU3_LACSA)

HSP 1 Score: 67.4 bits (163), Expect = 8.590e-12
Identity = 35/52 (67.31%), Postives = 43/52 (82.69%), Query Frame = 1
Query:    1 VARSILFNVFVFCQVFNEFNSRSIFDEWNVFRGLSKNPLFIAIIVVTVALQV 156
            V  +I+FN FVFCQVFNEFNSR + ++ NVF+GL KN LF+ IIVVTVALQ+
Sbjct:  866 VKNTIIFNTFVFCQVFNEFNSRKL-EKRNVFQGLHKNRLFMGIIVVTVALQI 916          
BLAST of mRNA_H-elongata_contig16464.4076.1 vs. uniprot
Match: A0A150H159_GONPE (Calcium-transporting ATPase n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150H159_GONPE)

HSP 1 Score: 66.6 bits (161), Expect = 1.600e-11
Identity = 28/51 (54.90%), Postives = 40/51 (78.43%), Query Frame = 1
Query:    4 ARSILFNVFVFCQVFNEFNSRSIFDEWNVFRGLSKNPLFIAIIVVTVALQV 156
            A S+LFN F+FCQ+FNE N+R I DE+++F GL  NP+F+ +I++TV  QV
Sbjct:  858 ALSVLFNAFIFCQIFNEINARRINDEYSIFAGLFTNPIFVGVIIITVCFQV 908          
BLAST of mRNA_H-elongata_contig16464.4076.1 vs. uniprot
Match: UPI0006AA9421 (calcium-transporting ATPase 9, plasma membrane-type-like n=1 Tax=Brassica napus TaxID=3708 RepID=UPI0006AA9421)

HSP 1 Score: 63.5 bits (153), Expect = 2.450e-11
Identity = 31/52 (59.62%), Postives = 40/52 (76.92%), Query Frame = 1
Query:    1 VARSILFNVFVFCQVFNEFNSRSIFDEWNVFRGLSKNPLFIAIIVVTVALQV 156
            V  +++FN FV CQ+FNEFN+R   DE NVF G+SKNPLF+AI+ VT  LQ+
Sbjct:   36 VKNTMIFNAFVMCQIFNEFNARKP-DEMNVFSGVSKNPLFVAIVGVTFVLQI 86          
BLAST of mRNA_H-elongata_contig16464.4076.1 vs. uniprot
Match: A0A398ASS2_BRACM (Cation_ATPase_N domain-containing protein n=2 Tax=Brassica campestris TaxID=3711 RepID=A0A398ASS2_BRACM)

HSP 1 Score: 65.9 bits (159), Expect = 2.990e-11
Identity = 34/52 (65.38%), Postives = 42/52 (80.77%), Query Frame = 1
Query:    1 VARSILFNVFVFCQVFNEFNSRSIFDEWNVFRGLSKNPLFIAIIVVTVALQV 156
            V  +++FN FV CQVFNEFN+RS+ ++ NVFRGL KN LF+ IIVVTV LQV
Sbjct:  510 VKNTLIFNTFVLCQVFNEFNARSL-EKKNVFRGLHKNRLFVGIIVVTVVLQV 560          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16464.4076.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JXE6_9PHAE2.890e-1677.08Calcium-transporting ATPase n=2 Tax=Ectocarpus Tax... [more]
A0A482SMB8_9ARCH1.620e-1353.06Cation_ATPase_C domain-containing protein n=1 Tax=... [more]
A0A812PEW5_9DINO2.770e-1370.21ATP2B3 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=... [more]
A0A482SEH8_9ARCH9.640e-1355.10HAD family hydrolase n=1 Tax=archaeon TaxID=190666... [more]
A0A835ZDK6_9STRA9.650e-1361.22Calcium-transporting ATPase n=1 Tax=Tribonema minu... [more]
A8UMT8_BRAJU2.670e-1265.38Calcium-transporting ATPase (Fragment) n=1 Tax=Bra... [more]
A0A2J6JGU3_LACSA8.590e-1267.31Calcium-transporting ATPase n=3 Tax=Lactuca TaxID=... [more]
A0A150H159_GONPE1.600e-1154.90Calcium-transporting ATPase n=1 Tax=Gonium pectora... [more]
UPI0006AA94212.450e-1159.62calcium-transporting ATPase 9, plasma membrane-typ... [more]
A0A398ASS2_BRACM2.990e-1165.38Cation_ATPase_N domain-containing protein n=2 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16464contigH-elongata_contig16464:7408..7563 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score83.6
Seed ortholog evalue3e-14
Seed eggNOG ortholog2880.D7G3Y5
KEGG koko:K01537,ko:K05850
KEGG TC3.A.3.2
KEGG Pathwayko04020,ko04022,ko04024,ko04261,ko04925,ko04970,ko04972,map04020,map04022,map04024,map04261,map04925,map04970,map04972
EggNOG free text desc.calcium-transporting ATPase activity
EggNOG OGsCOG0474@1,KOG0204@2759
EC3.6.3.8
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size156
Cds size156
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929962.6451995-CDS-H-elongata_contig16464:7407..75631622929962.6451995-CDS-H-elongata_contig16464:7407..7563Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16464 7408..7563 +
1691679225.4654531-CDS-H-elongata_contig16464:7407..75631691679225.4654531-CDS-H-elongata_contig16464:7407..7563Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16464 7408..7563 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16464.4076.1prot_H-elongata_contig16464.4076.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig16464 7408..7563 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig16464.4076.1

>prot_H-elongata_contig16464.4076.1 ID=prot_H-elongata_contig16464.4076.1|Name=mRNA_H-elongata_contig16464.4076.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=52bp
VARSILFNVFVFCQVFNEFNSRSIFDEWNVFRGLSKNPLFIAIIVVTVAL
QV
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mRNA from alignment at H-elongata_contig16464:7408..7563+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig16464.4076.1 ID=mRNA_H-elongata_contig16464.4076.1|Name=mRNA_H-elongata_contig16464.4076.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=156bp|location=Sequence derived from alignment at H-elongata_contig16464:7408..7563+ (Himanthalia elongata Himel1 dioecious)
GTGGCTCGTAGCATCCTCTTCAATGTTTTTGTTTTTTGCCAGGTGTTTAA CGAGTTCAATTCGAGGTCTATCTTCGACGAGTGGAACGTATTCAGGGGCT TGAGCAAGAACCCACTCTTCATCGCCATCATCGTGGTGACCGTAGCCCTT CAGGTA
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Coding sequence (CDS) from alignment at H-elongata_contig16464:7408..7563+

>mRNA_H-elongata_contig16464.4076.1 ID=mRNA_H-elongata_contig16464.4076.1|Name=mRNA_H-elongata_contig16464.4076.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=312bp|location=Sequence derived from alignment at H-elongata_contig16464:7408..7563+ (Himanthalia elongata Himel1 dioecious)
GTGGCTCGTAGCATCCTCTTCAATGTTTTTGTTTTTTGCCAGGTGTTTAA
CGAGTTCAATTCGAGGTCTATCTTCGACGAGTGGAACGTATTCAGGGGCT
TGAGCAAGAACCCACTCTTCATCGCCATCATCGTGGTGACCGTAGCCCTT
CAGGTAGTGGCTCGTAGCATCCTCTTCAATGTTTTTGTTTTTTGCCAGGT
GTTTAACGAGTTCAATTCGAGGTCTATCTTCGACGAGTGGAACGTATTCA
GGGGCTTGAGCAAGAACCCACTCTTCATCGCCATCATCGTGGTGACCGTA
GCCCTTCAGGTA
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