mRNA_H-elongata_contig164432.4069.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig164432.4069.1
Unique NamemRNA_H-elongata_contig164432.4069.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig164432.4069.1 vs. uniprot
Match: D8LNL4_ECTSI (Mitogen-activated protein kinase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNL4_ECTSI)

HSP 1 Score: 219 bits (559), Expect = 3.830e-66
Identity = 110/112 (98.21%), Postives = 112/112 (100.00%), Query Frame = 1 
Query:    1 QVAIKKIPGAFDDLVDAKRIVREIRLLRHFNHENVIKVVDILPPSSLEDFDDVYIISELMETDLHRVIYSRQRLTDEHTQYFLYQILCALKYIHSASVLHRDLKPSNVLLNA 336
            +VAIKKIPGAFDDLVDAKRIVREIRLLRHFNHENV+KVVDILPPSSLEDFDDVYIISELMETDLHRVIYSRQRLTDEHTQYFLYQILCALKYIHSASVLHRDLKPSNVLLNA
Sbjct:  162 KVAIKKIPGAFDDLVDAKRIVREIRLLRHFNHENVMKVVDILPPSSLEDFDDVYIISELMETDLHRVIYSRQRLTDEHTQYFLYQILCALKYIHSASVLHRDLKPSNVLLNA 273
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BLAST of mRNA_H-elongata_contig164432.4069.1 vs. uniprot
Match: A0A835Z2Y5_9STRA (Mitogen-activated protein kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2Y5_9STRA)

HSP 1 Score: 208 bits (530), Expect = 6.150e-63
Identity = 101/112 (90.18%), Postives = 109/112 (97.32%), Query Frame = 1 
Query:    1 QVAIKKIPGAFDDLVDAKRIVREIRLLRHFNHENVIKVVDILPPSSLEDFDDVYIISELMETDLHRVIYSRQRLTDEHTQYFLYQILCALKYIHSASVLHRDLKPSNVLLNA 336
            +VA+KKIPGAF+DL+DAKRIVREIRLLRHFNHENVIK+VDILPP SL DF+DVYIISELMETDLHRVIYSRQ+LTDEH QYFLYQ+LCALKYIHSASVLHRDLKPSNVLLNA
Sbjct:  155 KVAVKKIPGAFEDLIDAKRIVREIRLLRHFNHENVIKIVDILPPPSLNDFEDVYIISELMETDLHRVIYSRQKLTDEHIQYFLYQLLCALKYIHSASVLHRDLKPSNVLLNA 266
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BLAST of mRNA_H-elongata_contig164432.4069.1 vs. uniprot
Match: A0A6V1P443_HETAK (Mitogen-activated protein kinase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P443_HETAK)

HSP 1 Score: 199 bits (505), Expect = 2.190e-59
Identity = 95/112 (84.82%), Postives = 106/112 (94.64%), Query Frame = 1 
Query:    1 QVAIKKIPGAFDDLVDAKRIVREIRLLRHFNHENVIKVVDILPPSSLEDFDDVYIISELMETDLHRVIYSRQRLTDEHTQYFLYQILCALKYIHSASVLHRDLKPSNVLLNA 336
            +VA+KK+P AF+DLVDAKRIVREIRLLRHFNHEN++KVVD+ PP SL DF+DVYI+SELMETDLHRVIYSRQRLTDEH QYFLYQILC +KYIHSA+VLHRDLKPSNVLLNA
Sbjct:  156 KVAVKKVPNAFEDLVDAKRIVREIRLLRHFNHENIMKVVDLPPPPSLTDFEDVYIVSELMETDLHRVIYSRQRLTDEHIQYFLYQILCGVKYIHSANVLHRDLKPSNVLLNA 267
[Close]
BLAST of mRNA_H-elongata_contig164432.4069.1 vs. uniprot
Match: A0A7S2CTE8_9STRA (Mitogen-activated protein kinase (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CTE8_9STRA)

HSP 1 Score: 184 bits (467), Expect = 5.060e-57
Identity = 87/112 (77.68%), Postives = 102/112 (91.07%), Query Frame = 1 
Query:    1 QVAIKKIPGAFDDLVDAKRIVREIRLLRHFNHENVIKVVDILPPSSLEDFDDVYIISELMETDLHRVIYSRQRLTDEHTQYFLYQILCALKYIHSASVLHRDLKPSNVLLNA 336
            +VAIKKIP  F+DLVDAKRIVREIRLLRHFNH+NVIKV+D+  P   +DF DVYI+S+LMETDLHRVIYSRQ+LT+EH Q+FLYQ++C LKYIHSA+VLHRDLKPSN+LLNA
Sbjct:   39 KVAIKKIPNTFEDLVDAKRIVREIRLLRHFNHDNVIKVLDLFTPQPHDDFSDVYIVSDLMETDLHRVIYSRQQLTNEHIQFFLYQMMCGLKYIHSAAVLHRDLKPSNILLNA 150
[Close]
BLAST of mRNA_H-elongata_contig164432.4069.1 vs. uniprot
Match: A0A7S2CTH5_9STRA (Mitogen-activated protein kinase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CTH5_9STRA)

HSP 1 Score: 184 bits (467), Expect = 3.680e-55
Identity = 87/112 (77.68%), Postives = 102/112 (91.07%), Query Frame = 1 
Query:    1 QVAIKKIPGAFDDLVDAKRIVREIRLLRHFNHENVIKVVDILPPSSLEDFDDVYIISELMETDLHRVIYSRQRLTDEHTQYFLYQILCALKYIHSASVLHRDLKPSNVLLNA 336
            +VAIKKIP  F+DLVDAKRIVREIRLLRHFNH+NVIKV+D+  P   +DF DVYI+S+LMETDLHRVIYSRQ+LT+EH Q+FLYQ++C LKYIHSA+VLHRDLKPSN+LLNA
Sbjct:   39 KVAIKKIPNTFEDLVDAKRIVREIRLLRHFNHDNVIKVLDLFTPQPHDDFSDVYIVSDLMETDLHRVIYSRQQLTNEHIQFFLYQMMCGLKYIHSAAVLHRDLKPSNILLNA 150
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BLAST of mRNA_H-elongata_contig164432.4069.1 vs. uniprot
Match: A0A8J5J0U6_9STRA (Protein kinase domain-containing protein (Fragment) n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5J0U6_9STRA)

HSP 1 Score: 181 bits (458), Expect = 1.910e-54
Identity = 87/112 (77.68%), Postives = 103/112 (91.96%), Query Frame = 1 
Query:    1 QVAIKKIPGAFDDLVDAKRIVREIRLLRHFNHENVIKVVDILPPSSLEDFDDVYIISELMETDLHRVIYSRQRLTDEHTQYFLYQILCALKYIHSASVLHRDLKPSNVLLNA 336
            +VA+KKI  AF+DLVDAKRI+REI+LL+HFNHENVI +VD+LPP SL  F+DVYII++LMETDLHR+IYSRQ LTD+H QYFLYQIL ALKYIHSA+VLHRDLKPSN+LLN+
Sbjct:   10 KVAVKKISRAFEDLVDAKRILREIKLLQHFNHENVITIVDLLPPPSLAQFEDVYIIADLMETDLHRIIYSRQPLTDDHVQYFLYQILRALKYIHSANVLHRDLKPSNLLLNS 121
[Close]
BLAST of mRNA_H-elongata_contig164432.4069.1 vs. uniprot
Match: A0A418AVS2_9STRA (Mitogen-activated protein kinase n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418AVS2_9STRA)

HSP 1 Score: 176 bits (447), Expect = 9.190e-54
Identity = 83/112 (74.11%), Postives = 104/112 (92.86%), Query Frame = 1 
Query:    1 QVAIKKIPGAFDDLVDAKRIVREIRLLRHFNHENVIKVVDILPPSSLEDFDDVYIISELMETDLHRVIYSRQRLTDEHTQYFLYQILCALKYIHSASVLHRDLKPSNVLLNA 336
            +VAIKK+  AF+DL+DAKRI+REI+LL+HF+HEN+I +VD+LPP+SL  F+DVYIIS+LMETDLHR+IYSRQ L+D+H QYFLYQIL ALKYIHS++VLHRDLKPSN+LLN+
Sbjct:   16 KVAIKKVSKAFEDLIDAKRILREIKLLQHFDHENIITIVDLLPPTSLAHFEDVYIISDLMETDLHRIIYSRQPLSDDHIQYFLYQILRALKYIHSSNVLHRDLKPSNLLLNS 127
[Close]
BLAST of mRNA_H-elongata_contig164432.4069.1 vs. uniprot
Match: D8LNS7_ECTSI (Mitogen-activated protein kinase (Fragment) n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNS7_ECTSI)

HSP 1 Score: 183 bits (465), Expect = 4.110e-53
Identity = 87/111 (78.38%), Postives = 102/111 (91.89%), Query Frame = 1 
Query:    1 QVAIKKIPGAFDDLVDAKRIVREIRLLRHFNHENVIKVVDILPPSSLEDFDDVYIISELMETDLHRVIYSRQRLTDEHTQYFLYQILCALKYIHSASVLHRDLKPSNVLLN 333
            +VAIKKIP AFDD+VDAKRIVRE+RLLR  +H N+IK+VDILPP SL DF+DVYI+SELM+TDLHRVIYS QRL+D+H +YFLYQILC +KYIHSASVLHRDLKPSN+LL+
Sbjct:  145 KVAIKKIPSAFDDVVDAKRIVREVRLLRRLDHMNIIKIVDILPPPSLTDFNDVYIVSELMDTDLHRVIYSSQRLSDQHVKYFLYQILCGVKYIHSASVLHRDLKPSNILLS 255
[Close]
BLAST of mRNA_H-elongata_contig164432.4069.1 vs. uniprot
Match: A0A418FXF1_9STRA (Mitogen-activated protein kinase n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418FXF1_9STRA)

HSP 1 Score: 174 bits (442), Expect = 4.810e-53
Identity = 83/112 (74.11%), Postives = 103/112 (91.96%), Query Frame = 1 
Query:    1 QVAIKKIPGAFDDLVDAKRIVREIRLLRHFNHENVIKVVDILPPSSLEDFDDVYIISELMETDLHRVIYSRQRLTDEHTQYFLYQILCALKYIHSASVLHRDLKPSNVLLNA 336
            +VAIKK+  AF+DL+DAKRI+REI+LL+HF+HEN+I +VD+LPP SL  F+DVYIIS+LMETDLHR+IYSRQ L+D+H QYFLYQIL ALKYIHS++VLHRDLKPSN+LLN+
Sbjct:   70 KVAIKKVSKAFEDLIDAKRILREIKLLQHFDHENIITIVDLLPPPSLALFEDVYIISDLMETDLHRIIYSRQPLSDDHIQYFLYQILRALKYIHSSNVLHRDLKPSNLLLNS 181
[Close]
BLAST of mRNA_H-elongata_contig164432.4069.1 vs. uniprot
Match: A0A024GIC7_9STRA (Mitogen-activated protein kinase n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GIC7_9STRA)

HSP 1 Score: 178 bits (452), Expect = 1.580e-52
Identity = 86/112 (76.79%), Postives = 104/112 (92.86%), Query Frame = 1 
Query:    1 QVAIKKIPGAFDDLVDAKRIVREIRLLRHFNHENVIKVVDILPPSSLEDFDDVYIISELMETDLHRVIYSRQRLTDEHTQYFLYQILCALKYIHSASVLHRDLKPSNVLLNA 336
            +VAIKK+  AF+DLVDAKRI+REI+LL+HF+HENVI +VD+LPP S+E F+DVYIIS+LMETDLHR+IYSRQ L+D+H QYFLYQIL ALKYIHSA+VLHRDLKPSN+LLN+
Sbjct:   42 KVAIKKVSKAFEDLVDAKRILREIKLLQHFDHENVITIVDLLPPISIEFFEDVYIISDLMETDLHRIIYSRQPLSDDHVQYFLYQILRALKYIHSANVLHRDLKPSNLLLNS 153
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig164432.4069.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNL4_ECTSI3.830e-6698.21Mitogen-activated protein kinase n=2 Tax=Ectocarpu... [more]
A0A835Z2Y5_9STRA6.150e-6390.18Mitogen-activated protein kinase n=1 Tax=Tribonema... [more]
A0A6V1P443_HETAK2.190e-5984.82Mitogen-activated protein kinase n=1 Tax=Heterosig... [more]
A0A7S2CTE8_9STRA5.060e-5777.68Mitogen-activated protein kinase (Fragment) n=1 Ta... [more]
A0A7S2CTH5_9STRA3.680e-5577.68Mitogen-activated protein kinase n=1 Tax=Florencie... [more]
A0A8J5J0U6_9STRA1.910e-5477.68Protein kinase domain-containing protein (Fragment... [more]
A0A418AVS2_9STRA9.190e-5474.11Mitogen-activated protein kinase n=1 Tax=Aphanomyc... [more]
D8LNS7_ECTSI4.110e-5378.38Mitogen-activated protein kinase (Fragment) n=2 Ta... [more]
A0A418FXF1_9STRA4.810e-5374.11Mitogen-activated protein kinase n=1 Tax=Aphanomyc... [more]
A0A024GIC7_9STRA1.580e-5276.79Mitogen-activated protein kinase n=1 Tax=Albugo ca... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig164432contigH-elongata_contig164432:216..871 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score180.6
Seed ortholog evalue3.9e-43
Seed eggNOG ortholog36331.EPrPI00000017658
KEGG koko:K04371
KEGG Pathwayko01521,ko01522,ko01524,ko04010,ko04011,ko04012,ko04013,ko04014,ko04015,ko04022,ko04024,ko04062,ko04066,ko04068,ko04071,ko04072,ko04114,ko04140,ko04150,ko04151,ko04210,ko04214,ko04218,ko04261,ko04270,ko04320,ko04350,ko04360,ko04370,ko04371,ko04380,ko04510,ko04520,ko04540,ko04550,ko04611,ko04620,ko04621,ko04650,ko04657,ko04658,ko04659,ko04660,ko04662,ko04664,ko04666,ko04668,ko04713,ko04720,ko04722,ko04723,ko04724,ko04725,ko04726,ko04730,ko04810,ko04910,ko04912,ko04914,ko04915,ko04916,ko04917,ko04919,ko04921,ko04926,ko04930,ko04933,ko04934,ko04960,ko05010,ko05020,ko05034,ko05131,ko05132,ko05133,ko05140,ko05142,ko05145,ko05152,ko05160,ko05161,ko05164,ko05165,ko05167,ko05200,ko05203,ko05205,ko05210,ko05211,ko05212,ko05213,ko05214,ko05215,ko05216,ko05218,ko05219,ko05220,ko05221,ko05223,ko05224,ko05225,ko05226,ko05230,ko05231,map01521,map01522,map01524,map04010,map04011,map04012,map04013,map04014,map04015,map04022,map04024,map04062,map04066,map04068,map04071,map04072,map04114,map04140,map04150,map04151,map04210,map04214,map04218,map04261,map04270,map04320,map04350,map04360,map04370,map04371,map04380,map04510,map04520,map04540,map04550,map04611,map04620,map04621,map04650,map04657,map04658,map04659,map04660,map04662,map04664,map04666,map04668,map04713,map04720,map04722,map04723,map04724,map04725,map04726,map04730,map04810,map04910,map04912,map04914,map04915,map04916,map04917,map04919,map04921,map04926,map04930,map04933,map04934,map04960,map05010,map05020,map05034,map05131,map05132,map05133,map05140,map05142,map05145,map05152,map05160,map05161,map05164,map05165,map05167,map05200,map05203,map05205,map05210,map05211,map05212,map05213,map05214,map05215,map05216,map05218,map05219,map05220,map05221,map05223,map05224,map05225,map05226,map05230,map05231
KEGG ModuleM00687
EggNOG free text desc.Sporangia induced mitogen-activated protein kinase. Source PGD
EggNOG OGs1MBGR@121069,KOG0660@1,KOG0660@2759
EC2.7.11.24
COG Functional cat.T
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko03036,ko04147
Hectar predicted targeting categoryother localisation
Exons2
Model size336
Cds size336
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929961.9599645-CDS-H-elongata_contig164432:215..3981622929961.9599645-CDS-H-elongata_contig164432:215..398Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig164432 216..398 -
1691679225.1989691-CDS-H-elongata_contig164432:215..3981691679225.1989691-CDS-H-elongata_contig164432:215..398Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig164432 216..398 -
1622929961.9711642-CDS-H-elongata_contig164432:718..8711622929961.9711642-CDS-H-elongata_contig164432:718..871Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig164432 719..871 -
1691679225.212051-CDS-H-elongata_contig164432:718..8711691679225.212051-CDS-H-elongata_contig164432:718..871Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig164432 719..871 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig164432.4069.1prot_H-elongata_contig164432.4069.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig164432 216..871 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig164432.4069.1

>prot_H-elongata_contig164432.4069.1 ID=prot_H-elongata_contig164432.4069.1|Name=mRNA_H-elongata_contig164432.4069.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=112bp
QVAIKKIPGAFDDLVDAKRIVREIRLLRHFNHENVIKVVDILPPSSLEDF
DDVYIISELMETDLHRVIYSRQRLTDEHTQYFLYQILCALKYIHSASVLH
RDLKPSNVLLNA
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mRNA from alignment at H-elongata_contig164432:216..871-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig164432.4069.1 ID=mRNA_H-elongata_contig164432.4069.1|Name=mRNA_H-elongata_contig164432.4069.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=656bp|location=Sequence derived from alignment at H-elongata_contig164432:216..871- (Himanthalia elongata Himel1 dioecious)
CAGGTGGCGATTAAAAAGATTCCGGGTGCTTTTGACGACCTCGTCGACGC
GAAGCGTATCGTGCGAGAGATACGGCTCCTGCGGCACTTCAACCACGAAA
ATGTAATCAAGGTGGTGGACATCCTGCCGCCTTCTTCACTGGAGGATTTT
GACGTGAGCGAGGCGTTTTTGCTAGGGGATGTAGAAGGGATGAGTGCCGT
AGTGGAGGGCTCACGGTTTGGCGAGGAGTTAGATTCTCGGGGCTCTGGGG
ATATCCCGAGGCGACGTTGCATGGGGTTGTTGACGCGTGTCGAACCTCCG
AATATTTTGCCCTGTTCTGATTGGTTGAATTGTTAACCTTTGCCCTACCC
TGCCACACTTTATATAAGGCTATAATATACTAGGCTCTAGCGTACTACCG
TAGTACACTGCGTATTTTAAATGATTATACCTCCAAACCGATTATTATCT
CGCTCTCTATCCGTGGCCGCCAGGATGTGTACATCATTTCCGAGCTGATG
GAGACGGATCTGCATCGAGTGATCTACTCGAGGCAGCGCCTCACCGACGA
GCATACGCAGTATTTCCTCTACCAGATTCTCTGCGCGCTCAAGTACATCC
ACTCGGCGTCTGTGCTGCACAGAGACCTGAAGCCTTCCAACGTACTACTC
AACGCA
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Coding sequence (CDS) from alignment at H-elongata_contig164432:216..871-

>mRNA_H-elongata_contig164432.4069.1 ID=mRNA_H-elongata_contig164432.4069.1|Name=mRNA_H-elongata_contig164432.4069.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=672bp|location=Sequence derived from alignment at H-elongata_contig164432:216..871- (Himanthalia elongata Himel1 dioecious)
CAGGTGGCGATTAAAAAGATTCCGGGTGCTTTTGACGACCTCGTCGACGC
GAAGCGTATCGTGCGAGAGATACGGCTCCTGCGGCACTTCAACCACGAAA
ATGTAATCAAGGTGGTGGACATCCTGCCGCCTTCTTCACTGGAGGATTTT
GACCAGGTGGCGATTAAAAAGATTCCGGGTGCTTTTGACGACCTCGTCGA
CGCGAAGCGTATCGTGCGAGAGATACGGCTCCTGCGGCACTTCAACCACG
AAAATGTAATCAAGGTGGTGGACATCCTGCCGCCTTCTTCACTGGAGGAT
TTTGACGATGTGTACATCATTTCCGAGCTGATGGAGACGGATCTGCATCG
AGTGATCTACTCGAGGCAGCGCCTCACCGACGAGCATACGCAGTATTTCC
TCTACCAGATTCTCTGCGCGCTCAAGTACATCCACTCGGCGTCTGTGCTG
CACAGAGACCTGAAGCCTTCCAACGTACTACTCAACGCAGATGTGTACAT
CATTTCCGAGCTGATGGAGACGGATCTGCATCGAGTGATCTACTCGAGGC
AGCGCCTCACCGACGAGCATACGCAGTATTTCCTCTACCAGATTCTCTGC
GCGCTCAAGTACATCCACTCGGCGTCTGTGCTGCACAGAGACCTGAAGCC
TTCCAACGTACTACTCAACGCA
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