mRNA_H-elongata_contig16440.4067.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig16440.4067.1
Unique NamemRNA_H-elongata_contig16440.4067.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig16440.4067.1 vs. uniprot
Match: A0A6H5KJ52_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ52_9PHAE)

HSP 1 Score: 361 bits (927), Expect = 8.870e-112
Identity = 193/399 (48.37%), Postives = 262/399 (65.66%), Query Frame = 1
Query:  514 LSAERYDDILLNLYGGVRETLLAEIHEHRDSCLALGCKGPFVSGQVDLTTVAGAEYKTFSASYIPPGEVTIKRIGLATRAFPGSHTANNVEYWLKKIS--------KQWFSKLVGDRVEPSDVFLAFTVDQGYNVVNAIEALNVPVVVCNAHRLITVVCWMLGIAGTDKTCKNPVLGKNMKKLAACVGKFSHSAVNNSELKTI*ELSPVFSKVYELIRRNDTRWTTQRNMMERLLQLKEPVVEYFRRNSNDKRRLTSHDWNVTNQVCTILDPIAEVNIKTQGDEDTYLSQATFLMKELMEVMNSECLQIRVLDKP-GIDPVPYEQVNKSELFSEVETAVEMYREVMEEKDLGRALNPTERISVFLDPRKKMISEDDCIAGGNALQTMAISDVEELGHHF 1683
            +S   ++ IL  +Y    + +   +  HR+SC+ LG  GPF+  Q+DLTTVA  EY TFS SYI     TI R+GLATRAFPGSHTA ++E W++K S         ++F+ ++G+ V+P DVFLAFTVDQG NVVNA   L+V V+ CNAHRL +V  W LGI G+ +T +NP + K MK+LAA VG FSHSAVNN ELK I  L   F  +YELIRRNDTRW +Q  MM RLL+LK+ +VEYFR N N+ R+L+S +W VTN+VC++LD +AEV +K QG  DT++SQ  F M+E+ E+ + +  +IRV D+P   D V  E++   +L +E     E+    ME+K+LG A  P ERI   LDPR+K  S++  + G   L+  AI+DV+ +   F
Sbjct:  227 MSDATFNSILSTIYTETCDAVKTGLRLHRESCVKLGYVGPFLGAQLDLTTVANEEYITFSVSYIAEAATTITRVGLATRAFPGSHTAADIEPWIEKASFTTFKLLTTEFFADMMGENVQPKDVFLAFTVDQGGNVVNACRNLDVEVLKCNAHRLNSVTMWALGINGSIRTGENPAMEKLMKRLAAVVGVFSHSAVNNDELKDIQRLQEEFQIIYELIRRNDTRWASQHAMMVRLLKLKKAIVEYFRDNENNNRKLSSREWTVTNEVCSLLDVVAEVTVKIQGATDTHISQTMFNMREIREIFSGDVYKIRVPDQPYNDDSVLKEKIQVDDLMTETCKVREVVLSRMEKKELGAARMPLERICALLDPRRKDCSDEHLVNGSADLKASAIADVKSVAKTF 625          
BLAST of mRNA_H-elongata_contig16440.4067.1 vs. uniprot
Match: A0A6H5JZU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZU3_9PHAE)

HSP 1 Score: 341 bits (874), Expect = 5.120e-106
Identity = 186/412 (45.15%), Postives = 268/412 (65.05%), Query Frame = 1
Query:  514 LSAERYDDILLNLYGGVRETLLAEIHEHRDSCLALGCKGPFVSGQVDLTTVAGAEYKTFSASYIPPGEVTIKRIGLATRAFPGSHTANNVEYWLKKISKQWFSKLVGDRVEPSDVFLAFTVDQGYNVVNAIEALNVPVVVCNAHRLITVVCWMLGIAGTDKTCKNPVLGKNMKKLAACVGKFSHSAVNNSELKTI*ELSPVFSKVYELIRRNDTRWTTQRNMMERLLQLKEPVVEYFRR-------NSNDKRRLTSHDWNVTNQVCTILDPIAEVNIKTQGDEDTYLSQATFLMKELMEVMNSECLQIRV----LDKP----GIDPVPYEQVNKS-------------ELFSEVETAVEMYREVMEEKDLGRALNPTERISVFLDPRKKMISEDDCIAGGNALQTMAISDVE 1665
            ++A  ++ +L  L+  +++ ++ ++   R+ CL +G  G F+  Q+DLTTVAG EY TF+ SY+  G+  + R+ LATRAFPGSHTA++++ W++ ++ ++ + L+G  VE  DVFLAFTVDQG NVVNA  AL VPVV CN HR+ + V W LGIAG+  TCKN    K MKKLAA VG FSHSAVNN  LK +  L     ++YE IRRNDTRWT+Q+ MM RLL LK+P+ EYFRR       N   KR+LT+H+W VTN+VC++L+ ++EV I+ QG  DT+LSQATF++ E+++++ ++   IRV    +  P    GI P   E  N+S             +L  E +  V++  EVM+EK +G+AL   ER+SV LDPR+K + +     G + L+T A +D++
Sbjct:   56 MAATTFNKLLDTLHDRMKQAVVDDLRSVREECLGMGYGGAFLGAQLDLTTVAGEEYITFAVSYVKKGDTDVSRVSLATRAFPGSHTADDIKPWIEALTLEYLTDLMGGSVESQDVFLAFTVDQGKNVVNACTALGVPVVECNCHRVNSAVLWALGIAGSVTTCKN----KPMKKLAALVGVFSHSAVNNDMLKELQRLEADLHRIYETIRRNDTRWTSQQKMMGRLLILKKPISEYFRRLAQQNSQNKQLKRKLTAHEWTVTNEVCSLLETVSEVTIRMQGATDTHLSQATFIINEVIDMLTTDYHPIRVESAIVTPPPPAAGIIPTEGEGQNESSLDGISTAETQVTDLTLEAQDVVQVLLEVMDEKGVGKALQWVERLSVLLDPRRKTLDDTHLRNGSSDLKTQAEADLK 463          
BLAST of mRNA_H-elongata_contig16440.4067.1 vs. uniprot
Match: A0A6H5JQI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQI6_9PHAE)

HSP 1 Score: 340 bits (871), Expect = 1.590e-105
Identity = 182/397 (45.84%), Postives = 258/397 (64.99%), Query Frame = 1
Query:  514 LSAERYDDILLNLYGGVRETLLAEIHEHRDSCLALGCKGPFVSGQVDLTTVAGAEYKTFSASYIPPGEVTIKRIGLATRAFPGSHTANNVEYWLKKISKQWFSKLVGDRVEPSDVFLAFTVDQGYNVVNAIEALNVPVVVCNAHRLITVVCWMLGIAGTDKTCKNPVLGKNMKKLAACVGKFSHSAVNNSELKTI*ELSPVFSKVYELIRRNDTRWTTQRNMMERLLQLKEPVVEYFRR-------NSNDKRRLTSHDWNVTNQVCTILDPIAEVNIKTQGDEDTYLSQATFLMKELMEVMNSECLQIRVLDKPGIDPVPYEQVNKSELFSEVETAVEMYREVMEEKDLGRALNPTERISVFLDPRKKMISEDDCIAGGNALQTMAISDVEELGHHF 1683
            +++  ++ +L  L+  V + ++ ++   R+ CL +G  G F+  Q+DLTTVAG EY TF+ SY+  G+  + R+ LATRAFPGSHTA++++ W++ ++ ++F+ L+G  VE  DVFLAFTVDQG NVVNA  AL VPVV CN HR+ + V W LGIAG+  TCKN    K MKKLAA VG FSHSAVNN  LK +  L     ++YE IRRNDTRWT+Q+ MM RLL LK+P+ EYFRR       N   KR+LT+H+W VTN+VC++L+ ++EV I+ QG  +T+LSQATF++ E  E  N   L          D +  E+   + L  E +  V++ RE+M+EK +G+AL   ER+SV LDPR+K + +     G + L+T A +D++     F
Sbjct:   56 MASTTFNKLLDTLHDRVEQAVVDDLRSVREECLGMGYGGAFLGAQLDLTTVAGEEYITFAVSYVKKGDTDVSRVSLATRAFPGSHTADDIKPWIEALTLEYFTDLMGGSVESQDVFLAFTVDQGKNVVNACTALGVPVVECNCHRVNSAVLWALGIAGSATTCKN----KPMKKLAALVGVFSHSAVNNDMLKELQRLEADLHRIYETIRRNDTRWTSQQKMMGRLLILKKPISEYFRRLAQQNSQNKQLKRKLTAHEWTVTNEVCSLLETVSEVTIRMQGATETHLSQATFIINE-GEGQNESSL----------DGISTEETQVTGLTLEAQDVVQVLREMMDEKGVGKALQRVERLSVLLDPRRKTLDDTHLRNGSSDLKTQAEADLKAFTGKF 437          
BLAST of mRNA_H-elongata_contig16440.4067.1 vs. uniprot
Match: A0A6H5JRT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT6_9PHAE)

HSP 1 Score: 342 bits (876), Expect = 2.730e-104
Identity = 174/386 (45.08%), Postives = 257/386 (66.58%), Query Frame = 1
Query:  514 LSAERYDDILLNLYGGVRETLLAEIHEHRDSCLALGCKGPFVSGQVDLTTVAGAEYKTFSASYIPPGEVTIKRIGLATRAFPGSHTANNVEYWLKKISKQWFSKLVGDRVEPSDVFLAFTVDQGYNVVNAIEALNVPVVVCNAHRLITVVCWMLGIAGTDKTCKNPVLGKNMKKLAACVGKFSHSAVNNSELKTI*ELSPVFSKVYELIRRNDTRWTTQRNMMERLLQLKEPVVEYFRRNSNDKRRLTSHDWNVTNQVCTILDPIAEVNIKTQGDEDTYLSQATFLMKELMEVMNSECLQIRVLDKPGIDPVPYEQVNKSELFSEVETAVEMYREVMEEKDLGRALNPTERISVFLDPRKKMISEDDCIAGGNALQTMAISDVEEL 1671
            +S + +D  L  LY  V+ +++ ++   R+ CL +G  G F+  Q+DLTTVAG EY TF+ SY+  G   + R+ LA RAFPG+HTA+++  W++++++++F+  +G+ VEP DVFLAFTVDQG NVVNA +AL VPVV CN HR+ T V W LGIAG  +  +N V+G  MKKLAA VG FSHSAVNN +LK +  L      VY+LIRRNDTRWT+Q  MM+RLL LK+P+ EYFR   ++ R+LT  +W +TN+VC++L  ++EV I+ QG +DT++SQA F++ E+ME++  +   IR  +    +P   E++   EL S  +  +E+  +VMEEK +G+A+   ER+S  +DPR+K +       G   L+  A  D++ +
Sbjct:  245 MSNDTFDKNLDTLYSRVKTSIVDDLRTLREECLGMGYSGAFLGAQLDLTTVAGEEYITFTVSYVEKGSTDVTRVALACRAFPGTHTADDISPWIEELTREYFADFMGEDVEPKDVFLAFTVDQGGNVVNACKALGVPVVKCNCHRVNTAVLWALGIAGNGR--RNKVMGDLMKKLAALVGVFSHSAVNNDKLKELQRLEEDLHAVYQLIRRNDTRWTSQFKMMDRLLALKKPITEYFREQPHNSRKLTQPEWTITNEVCSLLSDVSEVTIRMQGAKDTHISQAMFIIHEVMEMLREDSHPIRAQN--ATEP---EEMQVLELSSAAQGVLEVLLDVMEEKQVGKAVQQVERLSALMDPRRKSLDGAKLENGSATLRKKAEEDLKAV 623          
BLAST of mRNA_H-elongata_contig16440.4067.1 vs. uniprot
Match: A0A6H5JGG8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG8_9PHAE)

HSP 1 Score: 339 bits (869), Expect = 3.760e-103
Identity = 175/397 (44.08%), Postives = 259/397 (65.24%), Query Frame = 1
Query:  496 LTTPLELSAERYDDILLNLYGGVRETLLAEIHEHRDSCLALGCKGPFVSGQVDLTTVAGAEYKTFSASYIPPGEVTIKRIGLATRAFPGSHTANNVEYWLKKISKQWFSKLVGDRVEPSDVFLAFTVDQGYNVVNAIEALNVPVVVCNAHRLITVVCWMLGIAGTDKTCKNPVLGKNMKKLAACVGKFSHSAVNNSELKTI*ELSPVFSKVYELIRRNDTRWTTQRNMMERLLQLKEPVVEYFRRNSNDKRRLTSHDWNVTNQVCTILDPIAEVNIKTQGDEDTYLSQATFLMKELMEVMNSECLQIR-----VLDKPGIDPVPYEQVNKSELFSEVETAVEMYREVMEEKDLGRALNPTERISVFLDPRKKMISEDDCIAGGNALQTMAISDVEEL 1671
            +TT +  S   ++  L  LYG V  +++ E+   R+  L +G  GPF+  Q+DLTT AG EY TF+ +++  G+  + RI LA RAFPGSHTA +++ W++K++ ++FS  +G+ V+PSDVFLAFTVDQG N++NA  AL V VV CN HRL T V W LGIAG  +   NP +G  MKKLAA VG FSHSAVNN ELK +  L   FS++YEL+RRNDTRWT+Q  MM+R+L LK+P+ EYF++   ++R+LT ++W +TN+VC++L  ++EV I+ QG  DT++ QA F++ EL+E++  +   IR     V+  P  + +P +     +L +E +  +E+ +E M EK +G A    ER+S  +DPR+K +  D    G   L+  A  D++ +
Sbjct:  243 VTTTMAKST--FNQTLDELYGTVLSSVVGELRTLREENLGMGYSGPFLGAQLDLTTAAGEEYITFTVTFVKKGDTDMTRIALAARAFPGSHTAEDIQPWIEKLTLEYFSGFMGESVQPSDVFLAFTVDQGKNIINACTALGVTVVECNCHRLNTAVVWALGIAGKGRL--NPAMGTLMKKLAAMVGVFSHSAVNNDELKELQRLEEGFSRIYELLRRNDTRWTSQFKMMDRVLALKKPISEYFKKYPQNERKLTPNEWTITNEVCSLLSDVSEVTIRMQGSVDTHVGQAMFILHELIEMLGEDTHPIRQPNATVMPLPP-EGIPTDDTQVMDLTAEAQCVLEVLQEKMREKGMGSAQVAVERLSALMDPRRKSLDSDQLENGSADLRKKAEDDLKAV 634          
BLAST of mRNA_H-elongata_contig16440.4067.1 vs. uniprot
Match: A0A6H5JTB8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTB8_9PHAE)

HSP 1 Score: 333 bits (854), Expect = 5.840e-103
Identity = 173/397 (43.58%), Postives = 257/397 (64.74%), Query Frame = 1
Query:  496 LTTPLELSAERYDDILLNLYGGVRETLLAEIHEHRDSCLALGCKGPFVSGQVDLTTVAGAEYKTFSASYIPPGEVTIKRIGLATRAFPGSHTANNVEYWLKKISKQWFSKLVGDRVEPSDVFLAFTVDQGYNVVNAIEALNVPVVVCNAHRLITVVCWMLGIAGTDKTCKNPVLGKNMKKLAACVGKFSHSAVNNSELKTI*ELSPVFSKVYELIRRNDTRWTTQRNMMERLLQLKEPVVEYFRRNSNDKRRLTSHDWNVTNQVCTILDPIAEVNIKTQGDEDTYLSQATFLMKELMEVMNSECLQIR-----VLDKPGIDPVPYEQVNKSELFSEVETAVEMYREVMEEKDLGRALNPTERISVFLDPRKKMISEDDCIAGGNALQTMAISDVEEL 1671
            +TT +  S   ++  L  LYG V  +++ E+   R+  L +G  GPF+  Q+DLTT AG EY TF+ +++  G+  + RI LA RAFPGSHTA +++ W++K++ ++FS  +G+ V+PSDVFLAFTVDQG N++NA  AL V VV CN HRL T V W LGIAG  +   NP +G  MKKLAA VG FSHSAVNN ELK +  L   FS++YEL+R NDTRWT+Q  MM+R+L LK+P+ EYF++   ++R+LT ++W +TN+VC++L  ++EV I+ QG  DT++ QA F++ EL+E++  +   IR     V+  P  + +P +     +L +E +  +E+ +E M EK +G A    ER+S  +DPR + +  D    G   L+  A  D++ +
Sbjct:   48 VTTTMAKST--FNQTLDELYGTVLSSVVGELRTLREENLGMGYSGPFLGAQLDLTTAAGEEYITFTVTFVKKGDTDMTRIALAARAFPGSHTAEDIQPWIEKLTLEYFSGFMGESVQPSDVFLAFTVDQGKNIINACTALGVTVVECNCHRLNTAVVWALGIAGKGRL--NPAMGTLMKKLAAMVGVFSHSAVNNDELKELQRLEEGFSRIYELLRPNDTRWTSQFKMMDRVLALKKPISEYFKKYPQNERKLTPNEWTITNEVCSLLSDVSEVTIRMQGSVDTHVGQAMFILHELIEMLGEDTHPIRQPNATVMPLPP-EGIPTDDTQVMDLTAEAQCVLEVLQEKMREKGVGSAQVAVERLSALMDPRLRSLDSDQLENGSADLRKKAEDDLKAV 439          
BLAST of mRNA_H-elongata_contig16440.4067.1 vs. uniprot
Match: A0A6H5JXV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXV5_9PHAE)

HSP 1 Score: 278 bits (712), Expect = 3.400e-83
Identity = 149/337 (44.21%), Postives = 213/337 (63.20%), Query Frame = 1
Query:  475 FSWVFGILT---TPLELSAERYDDILLNLYGGVRETLLAEIHEHRDSCLALGCKGPFVSGQVDLTTVAGAEYKTFSASYIPPGEVT-IKRIGLATRAFPGSHTANNVEYWLKKISKQWFSKLVGDRVEPSDVFLAFTVDQGYNVVNAIEALNVPVVVCNAHRLITVVCWMLGIAGTDKTCKNPVLGKNMKKLAACVGKFSHSAVNNSELKTI*ELSPVFSKVYELIRRNDTRWTTQRNMMERLLQLKEPVVEYFRRNSND-------KRRLTSHDWNVTNQVCTILDPIAEVNIKTQGDEDTYLSQATFLMKELMEVMNSECLQIRVLDKPGIDPVP 1452
            F    G+L+       +++  ++ +L  LY  V++ ++ ++   R+  L +G  G F+   +DLTTVA  EY TF+ SY+  G+   + R+ LATRAFPGSHTA +++ W++ ++ ++F  L+G  V+P DVFL FTVDQG N+VNA  AL VPVV CN HR+ + V W LGIAG  +TCKN ++G  MKKLAA VG FSHSAVNN  LK I  L     +VYE        WT+Q  MM RLL L + + EYFRR +         KR+LT+H+W VTN+VC++LD ++E  I+ QG  DT++SQATF++ E+ME++  +   IRV +   + P P
Sbjct:   36 FKLFVGVLSPQYVDTTMASTTFNKVLDALYDRVKQAIMDDLRLLREEFLGMGYGGAFLGAHLDLTTVANEEYITFTVSYVKKGKTDDVTRVALATRAFPGSHTAEDIKPWIEALTLEYFKDLIGPSVQPHDVFLGFTVDQGKNIVNAYTALGVPVVECNCHRVNSAVLWALGIAGCARTCKNKLMGDLMKKLAASVGVFSHSAVNNDMLKEIQRLEADLHRVYE--------WTSQFRMMVRLLILNKAINEYFRRLAQQNPQHKQLKRKLTAHEWTVTNEVCSLLDTVSEATIRMQGAADTHISQATFIVHEVMEMLKEDSHPIRV-ENAMVTPPP 363          
BLAST of mRNA_H-elongata_contig16440.4067.1 vs. uniprot
Match: A0A6H5KAN7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAN7_9PHAE)

HSP 1 Score: 275 bits (702), Expect = 3.930e-82
Identity = 145/296 (48.99%), Postives = 201/296 (67.91%), Query Frame = 1
Query:  799 KISKQWFSKLVGDRVEPSDVFLAFTVDQGYNVVNAIEALNVPVVVCNAHRLITVVCWMLGIAGTDKTCKNPVLGKNMKKLAACVGKFSHSAVNNSELKTI*ELSPVFSKVYELIRRNDTRWTTQRNMMERLLQLKEPVVEYFRRNSNDKRRLTSHDWNVTNQVCTILDPIAEVNIKTQGDEDTYLSQATFLMKELMEVMNSECLQIRVLDKP-GIDPVPYEQVNKSELFSEVETAVEMYREVMEEKDLGRALNPTERISVFLDPRKKMISEDDCIAGGNALQTMAISDVEELGHHF 1683
            +++ ++F+ ++G+ V+P DVFLAFTVDQG NVVNA   L+V V+ CNAHRL +V  W LGI G+ +T +NP + K MK+LAA VG FSHSAVNN ELK I  L   F  +YELIRRNDTRW +Q  MM RLL+LK+ +VEYFR N N+ R+L+S +W VTN+VC++LD +AEV +K QG  DT++SQ  F M+E+ E+ + +  +IRV D+P   D V  E++   +L +E     E+    ME+K+LG A  P ERI   LDPR+K  S++  + G   L+  AI+DV+ +   F
Sbjct:    2 QLTTEFFADMMGENVQPKDVFLAFTVDQGGNVVNACRNLDVEVLKCNAHRLNSVTMWALGINGSIRTGENPAMEKLMKRLAAVVGVFSHSAVNNDELKDIQRLQEEFQIIYELIRRNDTRWASQHAMMVRLLKLKKAIVEYFRDNENNNRKLSSREWTVTNEVCSLLDVVAEVTVKIQGATDTHISQTMFNMREIREIFSGDVYKIRVPDQPYNDDSVLKEKIQVDDLMTETCKVREVVLSRMEKKELGAARMPLERICALLDPRRKDCSDEHLVNGSADLKASAIADVKSVAKTF 297          
BLAST of mRNA_H-elongata_contig16440.4067.1 vs. uniprot
Match: A0A6H5KDJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDJ6_9PHAE)

HSP 1 Score: 238 bits (608), Expect = 4.190e-68
Identity = 140/317 (44.16%), Postives = 197/317 (62.15%), Query Frame = 1
Query:  799 KISKQWFSKLVGDRVEPSDVFLAFTVDQGYNVVNAIEALNVPVVVCNAHRLITVVCWMLGIAGTDKTCKNPVLGKNMKKLAACVGKFSHSAVNNSELKTI*ELSPVFSKVYELIRRNDTRWTTQRNMMERLLQLKEPVVEYFRR------NSNDKRRLTSHDWNVTNQVCTILDPIAEVNIKTQGDEDTYLSQATFLMKELMEVMNSECLQIRVLDK------PGIDPVPYEQ--------------VNKSELFSEVETAVEMYREVMEEKDLGRALNPTERISVFLDPRKKMISEDDCIAGGNALQTMAISDVEEL 1671
            +++K++F   +G+ VEPSDVFLAFTVDQG NVVNA  AL V VV CN HR+ + V W LGIAG+  TC+N  +G  MKKLAA VG FS SAVNN  LK +  L     ++YEL+RRNDT   +Q  MM RLL LK+P+ EYFRR      N   KR+L+SH+W VTN+VC++L  ++E+ I+ QG +DT++SQA FL+ E+ME++  E   IR  +       P +D +P E+              ++  +L +E +   ++  EVMEEK +G+AL   ER+S  LDPR+K +       G   L+  A +D+++ 
Sbjct:    6 QLTKEYFGGFMGESVEPSDVFLAFTVDQGGNVVNACTALGVQVVKCNCHRINSAVVWALGIAGSATTCRNTKMGGLMKKLAALVGVFSPSAVNNM-LKELQRLETDLHRIYELMRRNDT---SQFKMMGRLLTLKKPISEYFRRLPQIPSNKQLKRKLSSHEWIVTNEVCSLLGDVSEITIRIQGAQDTHISQAMFLIHEVMEMLKDETHPIRTANAIVTPPPPALDVIPTEEEENQPQKGGVSTEDIHVEDLTTEAQGVRKVLLEVMEEKGVGKALQRVERLSALLDPRRKDLDATQVGNGDEDLRIAAEADLKKF 318          
BLAST of mRNA_H-elongata_contig16440.4067.1 vs. uniprot
Match: A0A6H5KAS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAS2_9PHAE)

HSP 1 Score: 228 bits (581), Expect = 4.000e-65
Identity = 124/287 (43.21%), Postives = 184/287 (64.11%), Query Frame = 1
Query:  829 VGDRVEPSDVFLAFTVDQGYNVVNAIEALNVPVVVCNAHRLITVVCWMLGIAGTDKTCKNPVLGKNMKKLAACVGKFSHSAVNNSELKTI*ELSPVFSKVYELIRRNDTRW-TTQRNMMERLLQLKEPVVEYFRRNSNDKRRLTSHDWNVTNQVCTILDPIAEVNIKTQGDEDTYLSQATFLMKELMEVMNSECLQIRVLDKPGIDPVPYEQVNK-----SELFSEVETAVEMYREVMEEKDLGRALNPTERISVFLDPRKKMISEDDCIAGGNALQTMAISDVEEL 1671
            +G+ V PS+ FLAFTVDQG N++NA  AL+V VV CN HR+ T V W LGIA   +  KNP +G  MKKLAA VG FSHSAVNN ELK +  L   FS++YEL+RRNDTRW T+Q  MM+R L LK+P+ E+F++   + R+LT ++W + N+VC++L  ++E+ I+ QG  DT++ QA F++ E++E++  +   IR  +   + PVP E +       ++L +E    +E+  +VM +K +G A    ER+S  +DPR+K++  D    G   L   A  D++ +
Sbjct:    1 MGESVVPSNDFLAFTVDQGKNIINACTALDVTVVECNCHRVNTAVVWALGIAAKGR--KNPTMGTLMKKLAAMVGVFSHSAVNNDELKELQRLEEGFSRIYELLRRNDTRWWTSQLKMMDRALALKKPISEFFKKYPQNDRKLTPNEWTIINEVCSLLADVSEITIRVQGSVDTHIGQAMFIIHEVIEMLGEDTHPIRQPNATVV-PVPEEGIPTDDTPVTDLTAEAPCVLEVLLDVMRKKGVGSAQVAAERLSALMDPRRKLLGSDQLENGSADLSKKAEDDLKAV 284          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16440.4067.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KJ52_9PHAE8.870e-11248.37Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JZU3_9PHAE5.120e-10645.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQI6_9PHAE1.590e-10545.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRT6_9PHAE2.730e-10445.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JGG8_9PHAE3.760e-10344.08Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ec... [more]
A0A6H5JTB8_9PHAE5.840e-10343.58Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JXV5_9PHAE3.400e-8344.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAN7_9PHAE3.930e-8248.99Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KDJ6_9PHAE4.190e-6844.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAS2_9PHAE4.000e-6543.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16440contigH-elongata_contig16440:1867..5122 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons4
Model size1683
Cds size645
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16440.4067.1prot_H-elongata_contig16440.4067.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig16440 2914..4412 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929961.7731795-UTR-H-elongata_contig16440:1866..21361622929961.7731795-UTR-H-elongata_contig16440:1866..2136Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16440 1867..2136 +
1691679225.1149902-UTR-H-elongata_contig16440:1866..21361691679225.1149902-UTR-H-elongata_contig16440:1866..2136Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16440 1867..2136 +
1622929961.8007693-UTR-H-elongata_contig16440:2727..29131622929961.8007693-UTR-H-elongata_contig16440:2727..2913Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16440 2728..2913 +
1691679225.1292493-UTR-H-elongata_contig16440:2727..29131691679225.1292493-UTR-H-elongata_contig16440:2727..2913Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16440 2728..2913 +
1622929961.8428855-UTR-H-elongata_contig16440:4412..44681622929961.8428855-UTR-H-elongata_contig16440:4412..4468Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16440 4413..4468 +
1691679225.1535-UTR-H-elongata_contig16440:4412..44681691679225.1535-UTR-H-elongata_contig16440:4412..4468Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16440 4413..4468 +
1622929961.8617334-UTR-H-elongata_contig16440:4596..51221622929961.8617334-UTR-H-elongata_contig16440:4596..5122Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16440 4597..5122 +
1691679225.1618917-UTR-H-elongata_contig16440:4596..51221691679225.1618917-UTR-H-elongata_contig16440:4596..5122Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16440 4597..5122 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929961.816287-CDS-H-elongata_contig16440:2913..32581622929961.816287-CDS-H-elongata_contig16440:2913..3258Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16440 2914..3258 +
1691679225.1372445-CDS-H-elongata_contig16440:2913..32581691679225.1372445-CDS-H-elongata_contig16440:2913..3258Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16440 2914..3258 +
1622929961.8307357-CDS-H-elongata_contig16440:4112..44121622929961.8307357-CDS-H-elongata_contig16440:4112..4412Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16440 4113..4412 +
1691679225.1453972-CDS-H-elongata_contig16440:4112..44121691679225.1453972-CDS-H-elongata_contig16440:4112..4412Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16440 4113..4412 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig16440.4067.1

>prot_H-elongata_contig16440.4067.1 ID=prot_H-elongata_contig16440.4067.1|Name=mRNA_H-elongata_contig16440.4067.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=215bp
MTLASCFSWVFGILTTPLELSAERYDDILLNLYGGVRETLLAEIHEHRDS
CLALGCKGPFVSGQVDLTTVAGAEYKTFSASYIPPGEVTIKRIGLATRAF
PGSHTANNVEYWLKKISKQWFSKLVGDRVEPSDVFLAFTVDQGYNVVNAI
EALNVPVVVCNAHRLITVVCWMLGIAGTDKTCKNPVLGKNMKKLAACVGK
FSHSAVNNSELKTI*
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mRNA from alignment at H-elongata_contig16440:1867..5122+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig16440.4067.1 ID=mRNA_H-elongata_contig16440.4067.1|Name=mRNA_H-elongata_contig16440.4067.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3256bp|location=Sequence derived from alignment at H-elongata_contig16440:1867..5122+ (Himanthalia elongata Himel1 dioecious)
AAAGGAAGAGGAACTCATGGGTGTGGAAAGTGATACAGCAATTCGAACCA CCCATTAGAAAATGCTCCGTGCGGTGTTCGGTAGAGGTTTCGAAATATGG GAAAACACAGCCGTGCGGTGCTTTGTTCGCATGGAGTGGTTCATCGGGAA CATCAACACTCGCAAACCACATAAAAAGGGCACACCCCAGCGTCCATGCC GAACTCATGGTGGCGGGTGCCTCCTCGCGGAATCAAGGGACGAAAGGAAG GATGCAGCTCATGATCACAAGTGAGGGTTGGGATTTGTGTCCGTTGCAGC CTGTTTTCTATTTTCATGTACAGGTTTGAACAGTAGCAACCCCTGCGCTC GCATGGAGGTACTGGCCGAGATTTACGCGCGTACAGTAGTTGAAAAATAT AAATTCAAAAATGTACTTCGTACCAAATGTTAAAAAATCGTTTGTACCAT TACTTCATACGAAGTACAAAATATCAAACACTAATTGGTTTCCTATACTA ATAATAAATTATGCAGCAGTTGCTTCACCCGTACCTACTTGTACTGATTT GACATTATGCAACCCACTGATAATTTTACCTTACTAAATACTTTATCAAA ATCGAAATCCAAGCTCTGAAAGGGTTAGTGGGATACGTTCCATAGGTCAA AGTGTCATTTGAACAGCGCTATGTTATTATTCATGTTATAATGTTGTAAA CTACAGTAGTATAAATTAAACACTAGTGATACAGTACCTCGGATGCGTAT ATGTTATGTCCTTCTATGAAATATTATCCAACCATTCATGGCCCCTGTCC TGATATACTCCTGGTCGCACGTTGTCTCGTCCCTTTGGCGCGCTCGCTCT ATGCCATGAAGCATGCGACAAGCGCTCTCAGGCTACAGGCCCGAGAAAGG GCAAAGGAAAGCAACGAGAGCACACGAACGTAGGGGTCAACATCCAATCG TACATGCATCACAAACTACCAAACAACGTTCGCGAAATCGCAGACCGTTG CTTTGTAGCCTGGAGTGCTGTGAATTTCCGACCACAAAACATGATGCATG ACATTGGCTTCATGTTTTTCCTGGGTGTTTGGGATCCTGACTACACCTCT CGAACTGAGCGCCGAGAGGTACGACGACATCCTGCTGAACCTGTACGGGG GGGTACGGGAAACGTTGCTCGCGGAAATCCATGAGCACCGAGACTCATGC TTGGCGCTCGGGTGCAAGGGGCCTTTTGTTTCGGGACAGGTAGACTTGAC AACAGTGGCCGGCGCTGAGTACAAAACATTTTCGGCGTCATACATTCCTC CCGGCGAGGTGACCATAAAGCGCATTGGACTCGCTACAAGGGCATTCCCC GGCTCACACACCGCGAACAACGTGGAATACTGGTTGAAGAAGGTAAGGAA CGCGTCCGATCGAGTGTGAAGTAAAATATAAAATTTAAATCTAGATCGCG ATGTGGGTACCGTTTGTGGATGCTTTTACGTGCTTAAAAGAAAAAGAAAA AAGTGGGACATTCCCCGGGCAGTTCACGGGTCAAGTTTGACGGATCGGGT CGTGTTCAGTCGTTGCTGACAGGCAACGACCCGTCATATTTTGAGATTGC GGGTCATTGACACGCAACGACCTGTCATATTTTGATAGTGCGGGTCAGTG ACACGCAACAACCCGTCAGAGTTTAGGAGTGCGGGTCAGTGACACGCAAT GACCCGTCAGATTTTGAGATTGCGGGTCAGCGACACGCAACGACTCGTAA AAGGCGGGTCAATGACATGCAACGACCCGTCAGATTTTGAGAGTGCGGGT CAGTGACACGCAACGACCAGTCATATTTTCAGATTTCGGGTCACTGACAC GCAACGACCCGTCAGAATTTCAACATGTGGTGACACGACCCGCGTGTCGT GTCATGACCCGTGACCAGCCCTGGTAATTTTGTTGTTGTTTTAGTCTGTT TTTGTTTCTTACCTCTCAATTAGGTAAGGTTGGTTGACCGACACGCGCGT CAAGCCCACGGGTCCGGGCGGGTCACATGCACGGGTCACTCACGGGTGGC CCGTCAAAGGCGGGTCAATGACGCACAACAACCCGTCATATTTTGAGAGT GCGGGTCAGTGACACGCAACGACCCGTCATATTTTAGGAGTGCGGGTCAA TGACACTCAACGACCCGTGAACAGTCCTGGATATTCCGCGTTCACCTCAT TGAAGTCACGCTTACTTGCATTTGTGTCTCTTGCTTGGCTTAACAGATCT CTAAGCAGTGGTTCTCGAAACTCGTGGGAGACAGGGTTGAGCCCTCGGAC GTCTTCCTTGCTTTTACTGTCGACCAAGGCTATAACGTGGTGAACGCGAT CGAAGCCCTGAACGTCCCGGTAGTAGTGTGCAACGCACACCGCTTGATCA CGGTGGTTTGCTGGATGCTCGGTATTGCCGGGACTGACAAGACATGCAAG AACCCCGTCTTGGGAAAAAATATGAAGAAGCTTGCTGCGTGTGTGGGAAA GTTCAGTCATTCCGCGGTGAACAACAGCGAGCTCAAAACGATATAAGAGT TGTCCCCAGTTTTCAGCAAGGTCTACGAGCTCATCAGACGTAATGACACG AGGTAACAAATTTTTAATACCCAGGTGCCGTCCTCCCATGAATGTTCACG CGAAACACGAAATATACGCTGAAGATATATTCGAGTTGGTCAGCTTAGAT TGTGTTTCGCCCTTTCTTCACTCAACGCAGGTGGACCACCCAGAGGAATA TGATGGAGCGTCTTCTTCAACTTAAGGAGCCCGTCGTCGAGTACTTCAGG CGAAACTCGAACGACAAAAGACGGCTTACCAGTCATGACTGGAATGTCAC GAACCAAGTCTGCACCATCCTCGATCCTATCGCCGAAGTGAACATAAAAA CTCAAGGAGATGAGGACACGTACCTCAGCCAGGCGACCTTCCTGATGAAG GAACTGATGGAGGTCATGAACTCTGAGTGTCTTCAGATCCGGGTTCTAGA CAAGCCGGGCATAGATCCCGTACCATACGAACAAGTAAACAAATCTGAGC TTTTTTCGGAGGTTGAAACGGCGGTCGAGATGTATAGAGAAGTAATGGAG GAAAAGGATCTGGGTAGGGCTTTGAACCCAACTGAGCGCATCAGCGTCTT TCTCGATCCGAGAAAGAAAATGATATCCGAGGACGATTGCATTGCCGGTG GCAATGCGCTTCAGACGATGGCAATTTCGGACGTCGAAGAGCTCGGACAT CACTTC
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Coding sequence (CDS) from alignment at H-elongata_contig16440:1867..5122+

>mRNA_H-elongata_contig16440.4067.1 ID=mRNA_H-elongata_contig16440.4067.1|Name=mRNA_H-elongata_contig16440.4067.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1290bp|location=Sequence derived from alignment at H-elongata_contig16440:1867..5122+ (Himanthalia elongata Himel1 dioecious)
ATGACATTGGCTTCATGTTTTTCCTGGGTGTTTGGGATCCTGACTACACC
TCTCGAACTGAGCGCCGAGAGGTACGACGACATCCTGCTGAACCTGTACG
GGGGGGTACGGGAAACGTTGCTCGCGGAAATCCATGAGCACCGAGACTCA
TGCTTGGCGCTCGGGTGCAAGGGGCCTTTTGTTTCGGGACAGGTAGACTT
GACAACAGTGGCCGGCGCTGAGTACAAAACATTTTCGGCGTCATACATTC
CTCCCGGCGAGGTGACCATAAAGCGCATTGGACTCGCTACAAGGGCATTC
CCCGGCTCACACACCGCGAACAACGTGGAATACTGGTTGAAGAAGATGAC
ATTGGCTTCATGTTTTTCCTGGGTGTTTGGGATCCTGACTACACCTCTCG
AACTGAGCGCCGAGAGGTACGACGACATCCTGCTGAACCTGTACGGGGGG
GTACGGGAAACGTTGCTCGCGGAAATCCATGAGCACCGAGACTCATGCTT
GGCGCTCGGGTGCAAGGGGCCTTTTGTTTCGGGACAGGTAGACTTGACAA
CAGTGGCCGGCGCTGAGTACAAAACATTTTCGGCGTCATACATTCCTCCC
GGCGAGGTGACCATAAAGCGCATTGGACTCGCTACAAGGGCATTCCCCGG
CTCACACACCGCGAACAACGTGGAATACTGGTTGAAGAAGATCTCTAAGC
AGTGGTTCTCGAAACTCGTGGGAGACAGGGTTGAGCCCTCGGACGTCTTC
CTTGCTTTTACTGTCGACCAAGGCTATAACGTGGTGAACGCGATCGAAGC
CCTGAACGTCCCGGTAGTAGTGTGCAACGCACACCGCTTGATCACGGTGG
TTTGCTGGATGCTCGGTATTGCCGGGACTGACAAGACATGCAAGAACCCC
GTCTTGGGAAAAAATATGAAGAAGCTTGCTGCGTGTGTGGGAAAGTTCAG
TCATTCCGCGGTGAACAACAGCGAGCTCAAAACGATATAAATCTCTAAGC
AGTGGTTCTCGAAACTCGTGGGAGACAGGGTTGAGCCCTCGGACGTCTTC
CTTGCTTTTACTGTCGACCAAGGCTATAACGTGGTGAACGCGATCGAAGC
CCTGAACGTCCCGGTAGTAGTGTGCAACGCACACCGCTTGATCACGGTGG
TTTGCTGGATGCTCGGTATTGCCGGGACTGACAAGACATGCAAGAACCCC
GTCTTGGGAAAAAATATGAAGAAGCTTGCTGCGTGTGTGGGAAAGTTCAG
TCATTCCGCGGTGAACAACAGCGAGCTCAAAACGATATAA
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