mRNA_H-elongata_contig164367.4064.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig164367.4064.1
Unique NamemRNA_H-elongata_contig164367.4064.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig164367.4064.1 vs. uniprot
Match: D7G615_ECTSI (Alternative oxidase isoform A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G615_ECTSI)

HSP 1 Score: 148 bits (374), Expect = 1.360e-39
Identity = 67/82 (81.71%), Postives = 76/82 (92.68%), Query Frame = 1
Query:    1 RDHGWIHTLLEEAENERMHLLTFLKLKQPGPIFRFMVLLSQGVMFNAFFLTYIVSPKTCHRFVGYIEEEAVHTYSTVRESHD 246
            RDHGWIHTLLEEAENERMHLLTFLKLKQPGP+FRF V++SQGVM+NAFFL+Y++SPK CHRFVGYIEEEAVHTY+ + E  D
Sbjct:  214 RDHGWIHTLLEEAENERMHLLTFLKLKQPGPVFRFAVMISQGVMYNAFFLSYLISPKACHRFVGYIEEEAVHTYTVLLEDID 295          
BLAST of mRNA_H-elongata_contig164367.4064.1 vs. uniprot
Match: A0A6H5KXL8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXL8_9PHAE)

HSP 1 Score: 148 bits (374), Expect = 1.140e-38
Identity = 67/82 (81.71%), Postives = 76/82 (92.68%), Query Frame = 1
Query:    1 RDHGWIHTLLEEAENERMHLLTFLKLKQPGPIFRFMVLLSQGVMFNAFFLTYIVSPKTCHRFVGYIEEEAVHTYSTVRESHD 246
            RDHGWIHTLLEEAENERMHLLTFLKLKQPGP+FRF V++SQGVM+NAFFL+Y++SPK CHRFVGYIEEEAVHTY+ + E  D
Sbjct:  231 RDHGWIHTLLEEAENERMHLLTFLKLKQPGPVFRFAVMISQGVMYNAFFLSYLISPKACHRFVGYIEEEAVHTYTVLLEDID 312          
BLAST of mRNA_H-elongata_contig164367.4064.1 vs. uniprot
Match: A0A6A4ZNJ6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A6A4ZNJ6_9STRA)

HSP 1 Score: 134 bits (336), Expect = 1.090e-35
Identity = 61/79 (77.22%), Postives = 69/79 (87.34%), Query Frame = 1
Query:    1 RDHGWIHTLLEEAENERMHLLTFLKLKQPGPIFRFMVLLSQGVMFNAFFLTYIVSPKTCHRFVGYIEEEAVHTYSTVRE 237
            RD GWIHTLLEEAENERMHLL F+ LKQPGP+FR +VL  QGV FN FFLTY++SPKTCHRFVGY+EEEAVHTY+ + E
Sbjct:  150 RDQGWIHTLLEEAENERMHLLIFMTLKQPGPLFRLLVLGGQGVFFNMFFLTYLISPKTCHRFVGYLEEEAVHTYTAMVE 228          
BLAST of mRNA_H-elongata_contig164367.4064.1 vs. uniprot
Match: A0A6A4ZNR9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A6A4ZNR9_9STRA)

HSP 1 Score: 132 bits (331), Expect = 2.030e-35
Identity = 60/79 (75.95%), Postives = 68/79 (86.08%), Query Frame = 1
Query:    1 RDHGWIHTLLEEAENERMHLLTFLKLKQPGPIFRFMVLLSQGVMFNAFFLTYIVSPKTCHRFVGYIEEEAVHTYSTVRE 237
            RD GWIHTLLEEAENERMHLL F+ LKQPGP+FR +VL  QGV FN FFL Y++SPKTCHRFVGY+EEEAVHTY+ + E
Sbjct:   52 RDQGWIHTLLEEAENERMHLLIFMTLKQPGPLFRLLVLGGQGVFFNMFFLAYLISPKTCHRFVGYLEEEAVHTYTAMVE 130          
BLAST of mRNA_H-elongata_contig164367.4064.1 vs. uniprot
Match: A9URB9_MONBE (Predicted protein (Fragment) n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9URB9_MONBE)

HSP 1 Score: 130 bits (327), Expect = 1.400e-34
Identity = 60/83 (72.29%), Postives = 73/83 (87.95%), Query Frame = 1
Query:    1 RDHGWIHTLLEEAENERMHLLTFLKLKQPGPIFRFMVLLSQGVMFNAFFLTYIVSPKTCHRFVGYIEEEAVHTYSTVRESHDR 249
            RD+GWIHTLLEEAENERMHLLTF K+KQPG IFR MVL +QG+M+NA+F+ Y+VSP+TCHRF+GY+EEEAV TYS   E+ D+
Sbjct:   75 RDNGWIHTLLEEAENERMHLLTFTKVKQPGIIFRSMVLAAQGIMWNAYFVAYLVSPRTCHRFIGYLEEEAVKTYSHAIEALDK 157          
BLAST of mRNA_H-elongata_contig164367.4064.1 vs. uniprot
Match: A0A813BNK6_9DINO (AlxA protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813BNK6_9DINO)

HSP 1 Score: 129 bits (323), Expect = 1.850e-34
Identity = 58/75 (77.33%), Postives = 70/75 (93.33%), Query Frame = 1
Query:    1 RDHGWIHTLLEEAENERMHLLTFLKLKQPGPIFRFMVLLSQGVMFNAFFLTYIVSPKTCHRFVGYIEEEAVHTYS 225
            RD+GWIHTLLEEAENERMHLLTFL+LK+PGP FR +VLL+QGV FN +F++Y++SP+TCHRFVGY+EEEAV TYS
Sbjct:   38 RDYGWIHTLLEEAENERMHLLTFLELKKPGPAFRGLVLLAQGVFFNLYFISYLLSPRTCHRFVGYLEEEAVKTYS 112          
BLAST of mRNA_H-elongata_contig164367.4064.1 vs. uniprot
Match: A0A820Q8Q4_9BILA (Hypothetical protein n=1 Tax=Adineta steineri TaxID=433720 RepID=A0A820Q8Q4_9BILA)

HSP 1 Score: 126 bits (316), Expect = 2.690e-34
Identity = 59/75 (78.67%), Postives = 67/75 (89.33%), Query Frame = 1
Query:    1 RDHGWIHTLLEEAENERMHLLTFLKLKQPGPIFRFMVLLSQGVMFNAFFLTYIVSPKTCHRFVGYIEEEAVHTYS 225
            RDHGWIHTLL EAENERMHLLTFL+L+QPG IFR  VLL QGV FNAFFLTY++SP+ CHRFVG++EEEAV TY+
Sbjct:   35 RDHGWIHTLLSEAENERMHLLTFLELRQPGYIFRGFVLLGQGVFFNAFFLTYLLSPQICHRFVGFLEEEAVTTYT 109          
BLAST of mRNA_H-elongata_contig164367.4064.1 vs. uniprot
Match: A0A836CI40_9STRA (Alternative oxidase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI40_9STRA)

HSP 1 Score: 130 bits (327), Expect = 3.570e-33
Identity = 61/90 (67.78%), Postives = 74/90 (82.22%), Query Frame = 1
Query:    1 RDHGWIHTLLEEAENERMHLLTFLKLKQPGPIFRFMVLLSQGVMFNAFFLTYIVSPKTCHRFVGYIEEEAVHTYSTVRESHD--RLDYLE 264
            RDHGWIHTLLEEAENERMHLLTFL +K+PGP+FR  V  +QG+++N FF TY+V+PK CHRFVGYIEEEAVHTY+++ +  D  RL   E
Sbjct:  178 RDHGWIHTLLEEAENERMHLLTFLYMKKPGPVFRIAVTATQGLIWNLFFFTYLVNPKICHRFVGYIEEEAVHTYTSLLKDIDEGRLPMFE 267          
BLAST of mRNA_H-elongata_contig164367.4064.1 vs. uniprot
Match: A0A1V9ZPY2_9STRA (Alternative oxidase, mitochondrial n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZPY2_9STRA)

HSP 1 Score: 129 bits (324), Expect = 4.060e-33
Identity = 58/77 (75.32%), Postives = 67/77 (87.01%), Query Frame = 1
Query:    1 RDHGWIHTLLEEAENERMHLLTFLKLKQPGPIFRFMVLLSQGVMFNAFFLTYIVSPKTCHRFVGYIEEEAVHTYSTV 231
            RD GWIHTLLEEAENERMHLL FL +K PGP+FR +VL +QGV FN FFL Y+ SPKTCHRFVGY+EEEAVHTY+++
Sbjct:  153 RDQGWIHTLLEEAENERMHLLIFLNMKSPGPLFRILVLGAQGVFFNMFFLAYLTSPKTCHRFVGYLEEEAVHTYTSL 229          
BLAST of mRNA_H-elongata_contig164367.4064.1 vs. uniprot
Match: A0A8J4APH9_9CHLO (Ubiquinol oxidase (Fragment) n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4APH9_9CHLO)

HSP 1 Score: 124 bits (310), Expect = 4.190e-33
Identity = 55/82 (67.07%), Postives = 69/82 (84.15%), Query Frame = 1
Query:    1 RDHGWIHTLLEEAENERMHLLTFLKLKQPGPIFRFMVLLSQGVMFNAFFLTYIVSPKTCHRFVGYIEEEAVHTYSTVRESHD 246
            RD GWIHTLLEEAENERMHLLTF +L++PGP+FR  V+ +QGV FNA+FLTY++SP+TCH F+G++EEEAV TY+   E  D
Sbjct:   49 RDQGWIHTLLEEAENERMHLLTFFELRKPGPLFRAAVIAAQGVFFNAYFLTYLLSPRTCHAFIGFLEEEAVKTYTHALEEID 130          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig164367.4064.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G615_ECTSI1.360e-3981.71Alternative oxidase isoform A n=1 Tax=Ectocarpus s... [more]
A0A6H5KXL8_9PHAE1.140e-3881.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6A4ZNJ6_9STRA1.090e-3577.22Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A6A4ZNR9_9STRA2.030e-3575.95Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A9URB9_MONBE1.400e-3472.29Predicted protein (Fragment) n=1 Tax=Monosiga brev... [more]
A0A813BNK6_9DINO1.850e-3477.33AlxA protein n=1 Tax=Symbiodinium sp. KB8 TaxID=23... [more]
A0A820Q8Q4_9BILA2.690e-3478.67Hypothetical protein n=1 Tax=Adineta steineri TaxI... [more]
A0A836CI40_9STRA3.570e-3367.78Alternative oxidase n=1 Tax=Tribonema minus TaxID=... [more]
A0A1V9ZPY2_9STRA4.060e-3375.32Alternative oxidase, mitochondrial n=1 Tax=Thraust... [more]
A0A8J4APH9_9CHLO4.190e-3367.07Ubiquinol oxidase (Fragment) n=1 Tax=Volvox africa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig164367contigH-elongata_contig164367:798..1353 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score112.5
Seed ortholog evalue8.9e-23
Seed eggNOG ortholog2880.D7G615
Preferred nameAOX2
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0016020,GO:0019866,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464
EggNOG free text desc.alternative oxidase activity
EggNOG OGs28JWX@1,2QSB5@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size556
Cds size228
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig164367.4064.1prot_H-elongata_contig164367.4064.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig164367 849..1076 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929961.2272942-UTR-H-elongata_contig164367:797..8481622929961.2272942-UTR-H-elongata_contig164367:797..848Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig164367 798..848 +
1691679224.8789692-UTR-H-elongata_contig164367:797..8481691679224.8789692-UTR-H-elongata_contig164367:797..848Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig164367 798..848 +
1622929961.260812-UTR-H-elongata_contig164367:1076..13531622929961.260812-UTR-H-elongata_contig164367:1076..1353Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig164367 1077..1353 +
1691679224.8964713-UTR-H-elongata_contig164367:1076..13531691679224.8964713-UTR-H-elongata_contig164367:1076..1353Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig164367 1077..1353 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929961.242141-CDS-H-elongata_contig164367:848..10761622929961.242141-CDS-H-elongata_contig164367:848..1076Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig164367 849..1076 +
1691679224.888503-CDS-H-elongata_contig164367:848..10761691679224.888503-CDS-H-elongata_contig164367:848..1076Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig164367 849..1076 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig164367.4064.1

>prot_H-elongata_contig164367.4064.1 ID=prot_H-elongata_contig164367.4064.1|Name=mRNA_H-elongata_contig164367.4064.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=76bp
MHLLTFLKLKQPGPIFRFMVLLSQGVMFNAFFLTYIVSPKTCHRFVGYIE
EEAVHTYSTVRESHDRLDYLEGSFI*
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mRNA from alignment at H-elongata_contig164367:798..1353+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig164367.4064.1 ID=mRNA_H-elongata_contig164367.4064.1|Name=mRNA_H-elongata_contig164367.4064.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=556bp|location=Sequence derived from alignment at H-elongata_contig164367:798..1353+ (Himanthalia elongata Himel1 dioecious)
AGGGATCATGGGTGGATCCACACCCTGCTGGAGGAGGCGGAGAACGAGCG GATGCACCTGCTGACGTTTTTGAAGCTGAAGCAGCCGGGTCCCATCTTCC GCTTCATGGTGCTCCTTAGCCAGGGCGTTATGTTCAACGCATTCTTCCTC ACGTACATCGTCAGCCCCAAGACCTGCCACCGGTTCGTGGGCTACATCGA AGAGGAGGCCGTTCACACCTACTCAACGGTGCGGGAGTCGCACGATCGTT TGGACTATCTTGAGGGTTCGTTTATTTAGCCTTAGCAGTCGCCTTCGTGT CTACCGGCGACTCGCAGAAGCTACACCGTGATCAAGACTCTTCCAACCCC CCCACCTCTCGAATGAAAGTCCTGACGGGCTGTGACCAGCAGCGGAGAGG TCGACCTACGTTCGGGAATTGCGTGACCGTCACCCTTCGAGGACGTTGCA TGCACGCGGAGCGAGTCCTATTTTTCTTCTTCTCAAACCACATACACGCC GTGCTGCGGCCATGTTATAATAACTACAATATAGTGTTTTCTTATTCTAT TCACGA
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Coding sequence (CDS) from alignment at H-elongata_contig164367:798..1353+

>mRNA_H-elongata_contig164367.4064.1 ID=mRNA_H-elongata_contig164367.4064.1|Name=mRNA_H-elongata_contig164367.4064.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=456bp|location=Sequence derived from alignment at H-elongata_contig164367:798..1353+ (Himanthalia elongata Himel1 dioecious)
ATGCACCTGCTGACGTTTTTGAAGCTGAAGCAGCCGGGTCCCATCTTCCG
CTTCATGGTGCTCCTTAGCCAGGGCGTTATGTTCAACGCATTCTTCCTCA
CGTACATCGTCAGCCCCAAGACCTGCCACCGGTTCGTGGGCTACATCGAA
GAGGAGGCCGTTCACACCTACTCAACGGTGCGGGAGTCGCACGATCGTTT
GGACTATCTTGAGGGTTCGTTTATTTAGATGCACCTGCTGACGTTTTTGA
AGCTGAAGCAGCCGGGTCCCATCTTCCGCTTCATGGTGCTCCTTAGCCAG
GGCGTTATGTTCAACGCATTCTTCCTCACGTACATCGTCAGCCCCAAGAC
CTGCCACCGGTTCGTGGGCTACATCGAAGAGGAGGCCGTTCACACCTACT
CAACGGTGCGGGAGTCGCACGATCGTTTGGACTATCTTGAGGGTTCGTTT
ATTTAG
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