mRNA_H-elongata_contig16433.4063.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig16433.4063.1
Unique NamemRNA_H-elongata_contig16433.4063.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig16433.4063.1 vs. uniprot
Match: A0A6H5K8T1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8T1_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 1.390e-8
Identity = 35/86 (40.70%), Postives = 50/86 (58.14%), Query Frame = 1 
Query:   52 LGENQLSGLGEGEDAHKILDILAGCMILHLYNNPWECPPAPVVEKGIDAMRKYYDELEKAKPVIFD-----LRKVVFIGQSGAGKT 294
            + EN   GLGE EDA ++++ L   + LH   NPW  PP  VVE G+ A+++Y  ++ +AK    D     L KVV +G + AGKT
Sbjct:    1 MNENIGRGLGETEDALRLVERLGDSLYLH--GNPWIMPPEGVVEAGLTAVKRYLVDVREAKKAGADVTSLQLLKVVLVGSASAGKT 84
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BLAST of mRNA_H-elongata_contig16433.4063.1 vs. uniprot
Match: A0A7S3NP40_9STRA (Hypothetical protein (Fragment) n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NP40_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 3.950e-6
Identity = 25/64 (39.06%), Postives = 42/64 (65.62%), Query Frame = 1 
Query:  103 ILDILAGCMILHLYNNPWECPPAPVVEKGIDAMRKYYDELEKAKPVIFDLRKVVFIGQSGAGKT 294
            I+ ++   + + ++NNP + PP  +V+ G DA+++Y+DEL++   VI    K+V IG  GAGKT
Sbjct:    9 IVPLMRRGLKVSIFNNPLQEPPEEIVQNGPDAIKRYFDELDRGL-VISKQLKLVLIGHGGAGKT 71
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BLAST of mRNA_H-elongata_contig16433.4063.1 vs. uniprot
Match: A0A6P4Y5Y3_BRABE (malignant fibrous histiocytoma-amplified sequence 1 homolog n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4Y5Y3_BRABE)

HSP 1 Score: 51.6 bits (122), Expect = 2.520e-5
Identity = 25/54 (46.30%), Postives = 37/54 (68.52%), Query Frame = 1 
Query:  148 NPWECPPAPVVEKGIDAMRKYYDELEKAKPVIFDLRKVVFIGQSGAGKTRCDQS 309
            NP   PPA V  +GIDA+R+Y+DELE+++  +    KVV +G++ AGKT   Q+
Sbjct:  418 NPLIKPPAEVCRQGIDAIRQYFDELERSEEAVSAHLKVVVLGETMAGKTSLVQT 471
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BLAST of mRNA_H-elongata_contig16433.4063.1 vs. uniprot
Match: A0A8I2K6A8_9BACT (Roc domain-containing protein n=1 Tax=Candidatus Aminicenantes bacterium TaxID=2052149 RepID=A0A8I2K6A8_9BACT)

HSP 1 Score: 50.8 bits (120), Expect = 4.600e-5
Identity = 24/54 (44.44%), Postives = 36/54 (66.67%), Query Frame = 1 
Query:  133 LHLYNNPWECPPAPVVEKGIDAMRKYYDELEKAKPVIFDLRKVVFIGQSGAGKT 294
            L+LY NP   PP  +V+KG DA++ Y+DE+E+A  V+F   K++ +G    GKT
Sbjct:  256 LNLYGNPLIDPPEEIVKKGNDAVKNYFDEIERAS-VLFLESKLLLVGSGDVGKT 308
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BLAST of mRNA_H-elongata_contig16433.4063.1 vs. uniprot
Match: A0A6N2JGN8_9CYAN (GTP-binding protein n=1 Tax=Pseudanabaena sp. UWO311 TaxID=2487337 RepID=A0A6N2JGN8_9CYAN)

HSP 1 Score: 50.4 bits (119), Expect = 6.290e-5
Identity = 23/53 (43.40%), Postives = 33/53 (62.26%), Query Frame = 1 
Query:  136 HLYNNPWECPPAPVVEKGIDAMRKYYDELEKAKPVIFDLRKVVFIGQSGAGKT 294
            +LY NP   PP  +V KG+DA+R+Y+ +LE          K++ IG+ GAGKT
Sbjct:  310 NLYGNPISNPPMEIVNKGMDAIREYFQQLESEGGEYLYEAKLLIIGEGGAGKT 362
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BLAST of mRNA_H-elongata_contig16433.4063.1 vs. uniprot
Match: A0A845Z5J2_9CYAN (Roc domain-containing protein n=1 Tax=Okeania sp. SIO3B3 TaxID=2607804 RepID=A0A845Z5J2_9CYAN)

HSP 1 Score: 50.1 bits (118), Expect = 8.370e-5
Identity = 26/79 (32.91%), Postives = 43/79 (54.43%), Query Frame = 1 
Query:   58 ENQLSGLGEGEDAHKILDILAGCMILHLYNNPWECPPAPVVEKGIDAMRKYYDELEKAKPVIFDLRKVVFIGQSGAGKT 294
            +NQL+ + E       +  L     L+LY NP E PP  + EKGI A+R+Y+ ++++         K++ +G+ GA KT
Sbjct:    2 KNQLTSIPES------ISQLTNLTRLYLYKNPLETPPIEIAEKGIKAIREYFQQIKEEGTDYLYEAKLLIMGEGGAAKT 74
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16433.4063.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5K8T1_9PHAE1.390e-840.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3NP40_9STRA3.950e-639.06Hypothetical protein (Fragment) n=1 Tax=Aureoumbra... [more]
A0A6P4Y5Y3_BRABE2.520e-546.30malignant fibrous histiocytoma-amplified sequence ... [more]
A0A8I2K6A8_9BACT4.600e-544.44Roc domain-containing protein n=1 Tax=Candidatus A... [more]
A0A6N2JGN8_9CYAN6.290e-543.40GTP-binding protein n=1 Tax=Pseudanabaena sp. UWO3... [more]
A0A845Z5J2_9CYAN8.370e-532.91Roc domain-containing protein n=1 Tax=Okeania sp. ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16433contigH-elongata_contig16433:3547..6841 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.5
Seed ortholog evalue6.5e-08
Seed eggNOG ortholog2880.D7FL89
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG4886@1,KOG0619@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size312
Cds size312
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929961.1707244-CDS-H-elongata_contig16433:3546..37851622929961.1707244-CDS-H-elongata_contig16433:3546..3785Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16433 3547..3785 -
1691679224.8572743-CDS-H-elongata_contig16433:3546..37851691679224.8572743-CDS-H-elongata_contig16433:3546..3785Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16433 3547..3785 -
1622929961.1867557-CDS-H-elongata_contig16433:6768..68411622929961.1867557-CDS-H-elongata_contig16433:6768..6841Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16433 6769..6841 -
1691679224.8705797-CDS-H-elongata_contig16433:6768..68411691679224.8705797-CDS-H-elongata_contig16433:6768..6841Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16433 6769..6841 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16433.4063.1prot_H-elongata_contig16433.4063.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig16433 3547..6841 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig16433.4063.1

>prot_H-elongata_contig16433.4063.1 ID=prot_H-elongata_contig16433.4063.1|Name=mRNA_H-elongata_contig16433.4063.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=104bp
GPIPNELGKLTSLTTLNLGENQLSGLGEGEDAHKILDILAGCMILHLYNN
PWECPPAPVVEKGIDAMRKYYDELEKAKPVIFDLRKVVFIGQSGAGKTRC
DQS*
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mRNA from alignment at H-elongata_contig16433:3547..6841-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig16433.4063.1 ID=mRNA_H-elongata_contig16433.4063.1|Name=mRNA_H-elongata_contig16433.4063.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3295bp|location=Sequence derived from alignment at H-elongata_contig16433:3547..6841- (Himanthalia elongata Himel1 dioecious)
GGGCCGATACCGAATGAGTTGGGGAAACTCACTTCCCTTACAACGCTTAA
TCTTGGCGAAAACCAACTGAGTGGTAATGCCAACATTCGTCCTATTGTAC
CAGGATGATCGCATTTTTAGATGAAATATCTCGACAAATAATTAGTATTT
TGTACAATAAATTTTCCCGCATGTCGAGTTTTTCATCAACTGATTACTGT
TCATCGAATGACGGCCCAAATTTAGCGTTTTAATAATTCGACACATAATG
TGTTTCTAATGCTGGAGTTGAATCACTCACGCGATTTTTTGTCCATTCAG
CCAAGGAATGCCTTCTAGGTGTAAAATACATTTCCCCCGTTTCCCTCCAG
TGAGTTCTAATGGCTTTTTGTTTCCGCCTAGTTTTCGAATCTCTTGCTTA
TTATATAGGGTTCACTTTAGTAACTGATTTCGAAAAATGTTTTCTATATT
ATGTTTTATTGTATGTGAATCGTTAGACAAGAAAAATAAGCATTTTCTTA
CTCCACTATTTTGGTAGTAACAAGTAAAATAAAAAACCCCTACCAATCCA
ACATGTAAAAACTCATCGGTAAGGTTCTAAATGAATATGGTTGTGTTGCA
TATCGATATCGATTTTGGCAAGCACAGTGAGCTGACCCGCGAAAGGGCGA
AGCTCCCTGAGCGAGCCCAACCGCCCAACCCCGCAGCATCATATAAACGA
CACTACAGCAGAGAAGAAATAAAACAAAACACACTTCGATACTTGCAACA
TACAAAGCAAAAAAATATAAATTTTTCCACCGGCCGAGGGACTCCTGTGA
AATGCCGTCGCTTACGGCAAACGCGGCTGCCTCTTCCGCCGAGTTGACCC
TGGCACCGAACACTTTTTGCCGCCCTCTTCGTCGCCGGAGCTTTCCTCAA
GCCTCGTGGTAGACCGGCAAAGAAAGGGCAATGAAAACGCCCCCAGAACC
TACTCTACTATAGACCCGGTGCAGCTGTTCATCCGCATTCGCTGTGCAGC
GTGCAGAGCGTGCAGCGTACTTCGTAGTTCACTATCCCGGGCAGGTTGTC
ACGCTGTCACGCTATCACACAGTACAGCTTCGGGGGTCGTTTAGATCTTC
GAGGCTTCGTGTGTTTTTATTTTGAAATATCGAATCAAATCGAAATATCA
AATCGAACCGAAAAAGTAAATGTCTTAGATTCACTATACGATTTGATTTA
TCAAAGGGTTCGATTCGAGATGCAACACTAGTATCTTATCTACCCGAAAA
CCGTATATTGCGGTGGACGGTTTCAATTTTTACTTGCGAGATCACTCGCT
CTTGAATTGTTAATATTCGTGGGATTTTTGTTTAAAAACATTTATAAACC
CAATCAAACTTATGCATAAGTGTGACCAACAACAACAACACCAACATACA
CACCTTATTTAAACCATGGAATGTATAGTCCAGGGTCTTGAATTCCGACT
TTATATTTTGGTGCCAAATATTAGCTGATCGTATCTATATCGGCAGCGTG
GCGGTGAATATTAGTCCCCTTACGATACTTTTTATAACTTAAAGCAAACA
CTGCATTACTTGCGAGATACCTGTACAACTCTCGGATGGAGGCGAGAAAA
AGATTCACCTTTGAAATCTAGACCGACTTAGCGTTGTGTGTTTTTTGCAC
CCATTTATTTACTCTCCTTATTATATGTTTTGTCAATAATGTCGCGTGAT
CTCCCACGTTAATCTCTGAACAAGGCCGATACCGAATCTTTTTGCAACAA
TCATCTGAGCGGTAAAGACAACATGCGTCCTTTTGTATCTGGAGGATCGC
ATCTTAAATTGAAATATGTCGTCAAATGTTTCAGTATTTTGCAGTATGAA
TATTTCCAAACATCGATTTTTGTTTCCACTGAATTATATTCGTCGAATAT
AACAAGAGGCTAAATGCTATAAAAAATCAACATATATTTTATTTCTAATC
CTGCAGTTGTGTCCCATTCCGGCAAAAAACAGTATTTTTCCCATGTCCCT
ACAGGCAATTCTGTACGTTTTTATGGTAAAACTTCACGCCCATGGTGTTT
CTTTGACTTTAAGTCTCTTACTATTTAGGCTACGCCGTAGTACCTTTAAA
TGTTACACGACTTCACAAATTATGAACTATGGAGCGTCAACCTCCCGACA
AGGAAATTGACATTTTTATTGCACTCTTTGAAGGTACGACTTTGCTGGGA
AACCATACTACCCTAATCAATTTCTCGCTAGCAACAAACCCTCCAATAAG
GTCAAGATAGTGTATCCAGAAAAACGTATATTGCGATGGACGGTTTCCAT
TGACTTTCGAGATTAGTCGTCTTTAAGTTAGTTGAATGTTAACATTTTAT
TTTAATAGATTCTGGCTAAATATCTTTGCGTCGAATGCTTTTGGAGCGCG
TTTTTTGGCAGTGTGACTGTGATTATAGACACCCGATGACTCAGTCAAAG
AGGGTCTGTTCATCATCGAAGTCTAGAACGGGTGTCGCGTTGGGCGGTTT
TTAGCTATATGGTGTTGTCTAATGGAAGGAACGAGAGGATCGTAGGGGTA
AGCACCATATATAACTTGGGTAGGGAGAGTAAGCAGGCTGATGCAGGACG
GGACAGGGAAAATGCCTTTTCCCTGTTCCGCTTATCACGAGCAGGATTGG
CAACAATCGGGTTGATCAATTCTCTGCTATATGTGATGATAAATAAAACA
CACACACAAACACACTAGTCGTGGTGTATAAGTATCCTTCATTGAATTAG
TAGGGGATACTCATCATCCTTAAACTCGGCGGTAATGCAATCATGTGTCT
TAGTCTAATGGGGGGAAACCTATTACTGTTTCCTTTCCAGCAGAATGATT
TTTGAACTTGAATTTTTGCTTTACCGAAAATTGTTCGTCGAATCCCGCCC
AACACCCATCGTTATGGAGAATCTTGCCGACTTTTCAATGCATCAGCTAG
GTTTCAGAATTACAGATGACATGAGGAAGTTCGTGGCCTCGTTATTTATT
CGACGTTTTTCGCCTTTACTAGTCGTTATCGCTCTATCGCGAATTGGTTG
TGCCAGGTTTGGGAGAGGGCGAAGACGCACACAAGATCCTAGACATATTG
GCGGGCTGCATGATCCTCCACTTGTACAACAATCCATGGGAATGCCCTCC
AGCACCTGTGGTCGAGAAGGGCATCGATGCGATGAGGAAGTACTACGACG
AACTCGAAAAGGCGAAACCTGTCATTTTCGACTTGCGCAAGGTTGTGTTC
ATCGGACAAAGCGGAGCTGGCAAGACTAGGTGCGACCAATCATGA
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Coding sequence (CDS) from alignment at H-elongata_contig16433:3547..6841-

>mRNA_H-elongata_contig16433.4063.1 ID=mRNA_H-elongata_contig16433.4063.1|Name=mRNA_H-elongata_contig16433.4063.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=624bp|location=Sequence derived from alignment at H-elongata_contig16433:3547..6841- (Himanthalia elongata Himel1 dioecious)
GGGCCGATACCGAATGAGTTGGGGAAACTCACTTCCCTTACAACGCTTAA
TCTTGGCGAAAACCAACTGAGTGGGGCCGATACCGAATGAGTTGGGGAAA
CTCACTTCCCTTACAACGCTTAATCTTGGCGAAAACCAACTGAGTGGTTT
GGGAGAGGGCGAAGACGCACACAAGATCCTAGACATATTGGCGGGCTGCA
TGATCCTCCACTTGTACAACAATCCATGGGAATGCCCTCCAGCACCTGTG
GTCGAGAAGGGCATCGATGCGATGAGGAAGTACTACGACGAACTCGAAAA
GGCGAAACCTGTCATTTTCGACTTGCGCAAGGTTGTGTTCATCGGACAAA
GCGGAGCTGGCAAGACTAGGTGCGACCAATCATGAGTTTGGGAGAGGGCG
AAGACGCACACAAGATCCTAGACATATTGGCGGGCTGCATGATCCTCCAC
TTGTACAACAATCCATGGGAATGCCCTCCAGCACCTGTGGTCGAGAAGGG
CATCGATGCGATGAGGAAGTACTACGACGAACTCGAAAAGGCGAAACCTG
TCATTTTCGACTTGCGCAAGGTTGTGTTCATCGGACAAAGCGGAGCTGGC
AAGACTAGGTGCGACCAATCATGA
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