mRNA_H-elongata_contig164297.4062.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig164297.4062.1
Unique NamemRNA_H-elongata_contig164297.4062.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig164297.4062.1 vs. uniprot
Match: D8LU82_ECTSI (Conserved C2H2 zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU82_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 6.070e-20
Identity = 38/57 (66.67%), Postives = 44/57 (77.19%), Query Frame = 1 
Query:   13 SRQFTCHHCNRGFSTKGNLSRHIQATHVGG-KTFPCPTCGKEFKRKEDRNTHLRIHT 180
            S+QF C  C+R FSTKGN  RH QATH+ G KT+PC  CGKEFKRKEDR  H+R+HT
Sbjct:   71 SKQFKCSFCDRLFSTKGNKVRHEQATHLQGVKTYPCEVCGKEFKRKEDRTMHMRVHT 127
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BLAST of mRNA_H-elongata_contig164297.4062.1 vs. uniprot
Match: A0A6H5L0P6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0P6_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 3.750e-19
Identity = 37/58 (63.79%), Postives = 44/58 (75.86%), Query Frame = 1 
Query:   13 SRQFTCHHCNRGFSTKGNLSRHIQATHVGG-KTFPCPTCGKEFKRKEDRNTHLRIHTG 183
            S+QF C  C+  FSTKGN  RH QATH+ G +T+PC  CGKEFKRKEDR  H+R+HTG
Sbjct:   67 SKQFKCSFCDILFSTKGNKVRHEQATHLHGVRTYPCEVCGKEFKRKEDRTMHMRVHTG 124
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BLAST of mRNA_H-elongata_contig164297.4062.1 vs. uniprot
Match: A0A7D9HLY0_PARCT (Zinc finger and SCAN domain-containing 22 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HLY0_PARCT)

HSP 1 Score: 58.2 bits (139), Expect = 2.420e-8
Identity = 22/50 (44.00%), Postives = 31/50 (62.00%), Query Frame = 1 
Query:   28 CHHCNRGFSTKGNLSRHIQATHVGGKTFPCPTCGKEFKRKEDRNTHLRIH 177
            C+HC + F+ + +L RHIQ+ H G K+F C  C K F  K+  N H +IH
Sbjct:   60 CNHCEKVFTRRADLKRHIQSLHFGEKSFTCDQCDKSFATKDKLNRHKKIH 109
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BLAST of mRNA_H-elongata_contig164297.4062.1 vs. uniprot
Match: A0A3Q3EGK9_9LABR (Uncharacterized protein n=1 Tax=Labrus bergylta TaxID=56723 RepID=A0A3Q3EGK9_9LABR)

HSP 1 Score: 57.8 bits (138), Expect = 3.260e-8
Identity = 22/52 (42.31%), Postives = 36/52 (69.23%), Query Frame = 1 
Query:   22 FTCHHCNRGFSTKGNLSRHIQATHVGGKTFPCPTCGKEFKRKEDRNTHLRIH 177
            F C+ C+R FS +G+L+RH+++ H+G + FPCP+C   F R+     H+R+H
Sbjct:  568 FQCYLCDRSFSQRGSLNRHVRS-HLGVRPFPCPSCPMTFSRQYRVTEHMRVH 618
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BLAST of mRNA_H-elongata_contig164297.4062.1 vs. uniprot
Match: A0A8J1T8S4_OWEFU (Ofus.G012959 protein n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1T8S4_OWEFU)

HSP 1 Score: 57.4 bits (137), Expect = 4.510e-8
Identity = 26/57 (45.61%), Postives = 32/57 (56.14%), Query Frame = 1 
Query:   10 LSRQFTCHHCNRGFSTKGNLSRHIQATHVGGKTFPCPTCGKEFKRKEDRNTHLRIHT 180
            LS Q  C HC + FS +GNL +HI+A H+G + F C  CGK F  K     H   HT
Sbjct:  708 LSNQ--CQHCQKMFSQRGNLEKHIRAVHLGARPFECDICGKAFGYKHAMIKHKVCHT 762
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BLAST of mRNA_H-elongata_contig164297.4062.1 vs. uniprot
Match: A0A6S7K0F4_PARCT (Zinc finger and SCAN domain-containing 22 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7K0F4_PARCT)

HSP 1 Score: 57.0 bits (136), Expect = 6.160e-8
Identity = 22/50 (44.00%), Postives = 30/50 (60.00%), Query Frame = 1 
Query:   28 CHHCNRGFSTKGNLSRHIQATHVGGKTFPCPTCGKEFKRKEDRNTHLRIH 177
            C HC + F+ + +L RHIQ+ H G K+F C  C K F  K+  N H +IH
Sbjct:   60 CGHCEKVFTRRADLKRHIQSLHFGEKSFTCDQCDKSFATKDKLNRHKKIH 109
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BLAST of mRNA_H-elongata_contig164297.4062.1 vs. uniprot
Match: A0A8J1TG50_OWEFU (Ofus.G031601 protein n=2 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1TG50_OWEFU)

HSP 1 Score: 55.8 bits (133), Expect = 1.550e-7
Identity = 25/64 (39.06%), Postives = 34/64 (53.12%), Query Frame = 1 
Query:    7 TLSRQFTCHHCNRGFSTKGNLSRHIQATHVGGK----TFPCPTCGKEFKRKEDRNTHLRIHTGE 186
            T  + FTC HC + FS KGN+ +H++A H   +    ++PC  C K F        H R HTGE
Sbjct:  303 TGEKPFTCAHCQKDFSDKGNMLKHVRAKHDNNQLNIPSYPCSECWKSFPSVYALERHKRSHTGE 366
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BLAST of mRNA_H-elongata_contig164297.4062.1 vs. uniprot
Match: A0A7D9M683_PARCT (Gastrula zinc finger -like n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9M683_PARCT)

HSP 1 Score: 54.3 bits (129), Expect = 2.350e-7
Identity = 21/50 (42.00%), Postives = 29/50 (58.00%), Query Frame = 1 
Query:   28 CHHCNRGFSTKGNLSRHIQATHVGGKTFPCPTCGKEFKRKEDRNTHLRIH 177
            C HC + F+ + +L RHIQ+ H G K+F C  C K F  K+  N   +IH
Sbjct:   60 CDHCEKVFTRRADLKRHIQSLHFGEKSFTCDQCDKSFATKDKLNRQKKIH 109
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BLAST of mRNA_H-elongata_contig164297.4062.1 vs. uniprot
Match: UPI0008521E5F (zinc finger protein 28-like n=1 Tax=Cyphomyrmex costatus TaxID=456900 RepID=UPI0008521E5F)

HSP 1 Score: 54.7 bits (130), Expect = 3.870e-7
Identity = 28/73 (38.36%), Postives = 34/73 (46.58%), Query Frame = 1 
Query:    7 TLSRQFTCHHCNRGFSTKGNLSRHIQATH-------------VGGKTFPCPTCGKEFKRKEDRNTHLRIHTGE 186
            T  + + C  C     TKGNL  H+ A H             +GG ++ C TC KEFK     N H RIHTGE
Sbjct:   47 TGEKPYQCEFCKYKSRTKGNLKEHMVAKHNNDERFKSNKDLYIGGVSYKCGTCNKEFKYITHLNRHQRIHTGE 119
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BLAST of mRNA_H-elongata_contig164297.4062.1 vs. uniprot
Match: A0A151ICA1_9HYME (Uncharacterized protein n=1 Tax=Cyphomyrmex costatus TaxID=456900 RepID=A0A151ICA1_9HYME)

HSP 1 Score: 54.7 bits (130), Expect = 4.030e-7
Identity = 28/73 (38.36%), Postives = 34/73 (46.58%), Query Frame = 1 
Query:    7 TLSRQFTCHHCNRGFSTKGNLSRHIQATH-------------VGGKTFPCPTCGKEFKRKEDRNTHLRIHTGE 186
            T  + + C  C     TKGNL  H+ A H             +GG ++ C TC KEFK     N H RIHTGE
Sbjct:  834 TGEKPYQCEFCKYKSRTKGNLKEHMVAKHNNDERFKSNKDLYIGGVSYKCGTCNKEFKYITHLNRHQRIHTGE 906
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig164297.4062.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LU82_ECTSI6.070e-2066.67Conserved C2H2 zinc finger protein n=1 Tax=Ectocar... [more]
A0A6H5L0P6_9PHAE3.750e-1963.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7D9HLY0_PARCT2.420e-844.00Zinc finger and SCAN domain-containing 22 n=1 Tax=... [more]
A0A3Q3EGK9_9LABR3.260e-842.31Uncharacterized protein n=1 Tax=Labrus bergylta Ta... [more]
A0A8J1T8S4_OWEFU4.510e-845.61Ofus.G012959 protein n=1 Tax=Owenia fusiformis Tax... [more]
A0A6S7K0F4_PARCT6.160e-844.00Zinc finger and SCAN domain-containing 22 n=1 Tax=... [more]
A0A8J1TG50_OWEFU1.550e-739.06Ofus.G031601 protein n=2 Tax=Owenia fusiformis Tax... [more]
A0A7D9M683_PARCT2.350e-742.00Gastrula zinc finger -like n=2 Tax=Paramuricea cla... [more]
UPI0008521E5F3.870e-738.36zinc finger protein 28-like n=1 Tax=Cyphomyrmex co... [more]
A0A151ICA1_9HYME4.030e-738.36Uncharacterized protein n=1 Tax=Cyphomyrmex costat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig164297contigH-elongata_contig164297:478..663 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score62.0
Seed ortholog evalue1.1e-07
Seed eggNOG ortholog7719.NP_001037821.1
Preferred nameMECOM
KEGG koko:K04462,ko:K22410
KEGG Pathwayko04010,ko04714,ko05200,ko05220,map04010,map04714,map05200,map05220
GOsGO:0000122,GO:0000976,GO:0000977,GO:0000981,GO:0001012,GO:0001067,GO:0001228,GO:0001655,GO:0001701,GO:0001776,GO:0001780,GO:0001932,GO:0001933,GO:0002262,GO:0002376,GO:0002520,GO:0002682,GO:0002683,GO:0002761,GO:0002762,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0003712,GO:0003713,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006139,GO:0006325,GO:0006351,GO:0006355,GO:0006357,GO:0006366,GO:0006464,GO:0006479,GO:0006725,GO:0006807,GO:0006950,GO:0006952,GO:0006954,GO:0006996,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0007423,GO:0007507,GO:0008134,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008283,GO:0008757,GO:0009058,GO:0009059,GO:0009605,GO:0009607,GO:0009617,GO:0009653,GO:0009790,GO:0009791,GO:0009792,GO:0009888,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009966,GO:0009968,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010563,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010646,GO:0010648,GO:0010941,GO:0016043,GO:0016070,GO:0016234,GO:0016235,GO:0016278,GO:0016279,GO:0016569,GO:0016570,GO:0016571,GO:0016604,GO:0016607,GO:0016740,GO:0016741,GO:0017015,GO:0017053,GO:0018022,GO:0018024,GO:0018130,GO:0018193,GO:0018205,GO:0019219,GO:0019220,GO:0019222,GO:0019438,GO:0019538,GO:0019827,GO:0022008,GO:0023051,GO:0023057,GO:0030097,GO:0030154,GO:0030326,GO:0030334,GO:0030512,GO:0030852,GO:0030853,GO:0030900,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031399,GO:0031400,GO:0031974,GO:0031981,GO:0032259,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032774,GO:0032872,GO:0032873,GO:0032879,GO:0032991,GO:0033613,GO:0034641,GO:0034645,GO:0034654,GO:0034968,GO:0035019,GO:0035107,GO:0035108,GO:0035113,GO:0035115,GO:0035116,GO:0035136,GO:0035137,GO:0036211,GO:0040012,GO:0042054,GO:0042127,GO:0042325,GO:0042326,GO:0042592,GO:0042802,GO:0042803,GO:0043009,GO:0043067,GO:0043069,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043408,GO:0043409,GO:0043412,GO:0043414,GO:0043457,GO:0043467,GO:0043565,GO:0043586,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045444,GO:0045595,GO:0045596,GO:0045597,GO:0045598,GO:0045600,GO:0045637,GO:0045638,GO:0045664,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045936,GO:0045944,GO:0046328,GO:0046329,GO:0046332,GO:0046483,GO:0046983,GO:0048468,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048583,GO:0048585,GO:0048598,GO:0048699,GO:0048731,GO:0048736,GO:0048856,GO:0048869,GO:0048872,GO:0050767,GO:0050789,GO:0050793,GO:0050794,GO:0050872,GO:0050873,GO:0050896,GO:0051093,GO:0051094,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051239,GO:0051241,GO:0051246,GO:0051248,GO:0051252,GO:0051253,GO:0051254,GO:0051270,GO:0051276,GO:0051704,GO:0051707,GO:0051726,GO:0051960,GO:0060021,GO:0060039,GO:0060173,GO:0060255,GO:0060284,GO:0060322,GO:0060429,GO:0060548,GO:0065007,GO:0065008,GO:0070013,GO:0070302,GO:0070303,GO:0071425,GO:0071704,GO:0071840,GO:0072001,GO:0072089,GO:0072359,GO:0080090,GO:0080134,GO:0080135,GO:0090092,GO:0090101,GO:0090287,GO:0090288,GO:0090304,GO:0090335,GO:0090336,GO:0097159,GO:0097659,GO:0098727,GO:0140096,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1902105,GO:1902106,GO:1902531,GO:1902532,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1903706,GO:1903707,GO:1903844,GO:1903845,GO:1990837,GO:2000026,GO:2000112,GO:2000113,GO:2000145,GO:2001141
EggNOG free text desc.positive regulation of brown fat cell differentiation
EggNOG OGs38D4Z@33154,3BAJ6@33208,3CY6F@33213,47Z6R@7711,KOG1721@1,KOG1721@2759
COG Functional cat.K
Best tax levelChordata
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03000
Hectar predicted targeting categoryother localisation
Exons1
Model size186
Cds size186
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929961.0678694-CDS-H-elongata_contig164297:477..6631622929961.0678694-CDS-H-elongata_contig164297:477..663Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig164297 478..663 +
1691679224.8443604-CDS-H-elongata_contig164297:477..6631691679224.8443604-CDS-H-elongata_contig164297:477..663Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig164297 478..663 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig164297.4062.1prot_H-elongata_contig164297.4062.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig164297 478..663 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig164297.4062.1

>prot_H-elongata_contig164297.4062.1 ID=prot_H-elongata_contig164297.4062.1|Name=mRNA_H-elongata_contig164297.4062.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=62bp
MSTLSRQFTCHHCNRGFSTKGNLSRHIQATHVGGKTFPCPTCGKEFKRKE
DRNTHLRIHTGE
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mRNA from alignment at H-elongata_contig164297:478..663+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig164297.4062.1 ID=mRNA_H-elongata_contig164297.4062.1|Name=mRNA_H-elongata_contig164297.4062.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=186bp|location=Sequence derived from alignment at H-elongata_contig164297:478..663+ (Himanthalia elongata Himel1 dioecious)
ATGTCTACACTAAGCCGCCAGTTCACCTGCCACCACTGCAACCGGGGATT
TTCGACGAAGGGAAATCTATCGAGGCACATTCAGGCAACGCACGTGGGTG
GGAAAACGTTCCCGTGTCCCACATGTGGGAAGGAGTTCAAGAGGAAAGAG
GACAGAAACACGCACTTACGCATTCACACGGGTGAG
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Coding sequence (CDS) from alignment at H-elongata_contig164297:478..663+

>mRNA_H-elongata_contig164297.4062.1 ID=mRNA_H-elongata_contig164297.4062.1|Name=mRNA_H-elongata_contig164297.4062.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=372bp|location=Sequence derived from alignment at H-elongata_contig164297:478..663+ (Himanthalia elongata Himel1 dioecious)
ATGTCTACACTAAGCCGCCAGTTCACCTGCCACCACTGCAACCGGGGATT
TTCGACGAAGGGAAATCTATCGAGGCACATTCAGGCAACGCACGTGGGTG
GGAAAACGTTCCCGTGTCCCACATGTGGGAAGGAGTTCAAGAGGAAAGAG
GACAGAAACACGCACTTACGCATTCACACGGGTGAGATGTCTACACTAAG
CCGCCAGTTCACCTGCCACCACTGCAACCGGGGATTTTCGACGAAGGGAA
ATCTATCGAGGCACATTCAGGCAACGCACGTGGGTGGGAAAACGTTCCCG
TGTCCCACATGTGGGAAGGAGTTCAAGAGGAAAGAGGACAGAAACACGCA
CTTACGCATTCACACGGGTGAG
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