prot_H-elongata_contig164187.4056.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig164187.4056.1
Unique Nameprot_H-elongata_contig164187.4056.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length141
Homology
BLAST of mRNA_H-elongata_contig164187.4056.1 vs. uniprot
Match: D7FX60_ECTSI (WD40 repeat-containing protein SMU1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FX60_ECTSI)

HSP 1 Score: 248 bits (632), Expect = 9.850e-78
Identity = 117/135 (86.67%), Postives = 127/135 (94.07%), Query Frame = 0
Query:    6 TTENLHTFHPALSIGTHTEASVHTVFPLPGSTEQVLVSNRTSTAFLCTLQGQVVRSFTSPKTVRADFTCASMSPKGRWVYCVGEDGEMLCFDAGTAEMERALKVSDKEVIGVAHHPHRNLVATFSNEGLLKLWKS 140
            TTENLHTFHPALSIG+HTEASVHTV PLPGS EQVLVSNRTSTAFLCTLQGQVVRSFTSPK+VRADFTCA +SPKGRWVYC GEDGE+ CFDA T E+E+ LKVS+KE+IG+AHHPHRNL+ATFSNEGLLKLWKS
Sbjct:  382 TTENLHTFHPALSIGSHTEASVHTVRPLPGSAEQVLVSNRTSTAFLCTLQGQVVRSFTSPKSVRADFTCACLSPKGRWVYCAGEDGELFCFDAATTEVEKTLKVSEKEIIGLAHHPHRNLLATFSNEGLLKLWKS 516          
BLAST of mRNA_H-elongata_contig164187.4056.1 vs. uniprot
Match: A0A7S3XY04_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XY04_HETAK)

HSP 1 Score: 166 bits (419), Expect = 2.420e-50
Identity = 73/117 (62.39%), Postives = 97/117 (82.91%), Query Frame = 0
Query:   24 EASVHTVFPLPGSTEQVLVSNRTSTAFLCTLQGQVVRSFTSPKTVRADFTCASMSPKGRWVYCVGEDGEMLCFDAGTAEMERALKVSDKEVIGVAHHPHRNLVATFSNEGLLKLWKS 140
            E +VHTV PLPG+ +  LV+ R+STA++CTLQGQVV++F+S K V  DF  A++SP+G+WVYC GEDG + CF+  T ++++ LKV+DKEVIG+AHHPHRNLVATFS+EG LKLWK+
Sbjct:   15 ETAVHTVLPLPGAADHFLVAARSSTAYVCTLQGQVVKTFSSGKAVGGDFAAAAVSPQGKWVYCAGEDGVLYCFNVATGQLDQVLKVADKEVIGLAHHPHRNLVATFSDEGALKLWKA 131          
BLAST of mRNA_H-elongata_contig164187.4056.1 vs. uniprot
Match: W7TTZ3_9STRA (WD40 repeat-containing protein SMU1 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TTZ3_9STRA)

HSP 1 Score: 160 bits (405), Expect = 1.380e-46
Identity = 74/140 (52.86%), Postives = 99/140 (70.71%), Query Frame = 0
Query:    1 VWDAKTTENLHTFHPALSIGTHTEASVHTVFPLPGSTEQVLVSNRTSTAFLCTLQGQVVRSFTSPKTVRADFTCASMSPKGRWVYCVGEDGEMLCFDAGTAEMERALKVSDKEVIGVAHHPHRNLVATFSNEGLLKLWKS 140
            VWDA+++E LHTF P +      EA VHTV PLPG  +   ++NRTSTA++ T QGQVV+  +S K V  DF  A++SPKG + +C GEDG +  F  G  ++E  +KV +KEVIGVAHHPHRNLV TF +EG+LK+W++
Sbjct:  117 VWDARSSECLHTFRPGVESAVDLEAMVHTVLPLPGGADLFFIANRTSTAYVTTAQGQVVKRMSSGKKVGGDFAAAALSPKGTFAHCAGEDGIVYSFQLGKGDLESFVKVGEKEVIGVAHHPHRNLVVTFGDEGVLKVWRA 256          
BLAST of mRNA_H-elongata_contig164187.4056.1 vs. uniprot
Match: A0A7D9I5T5_PARCT (WD40 repeat-containing protein SMU1 n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9I5T5_PARCT)

HSP 1 Score: 154 bits (390), Expect = 2.330e-44
Identity = 71/134 (52.99%), Postives = 98/134 (73.13%), Query Frame = 0
Query:    6 TTENLHTFHPALSIGTHTEASVHTVFPLPGSTEQVLVSNRTSTAFLCTLQGQVVRSFTSPKTVRADFTCASMSPKGRWVYCVGEDGEMLCFDAGTAEMERALKVSDKEVIGVAHHPHRNLVATFSNEGLLKLWK 139
            TTE +HTF PA+     T+ +V++V P+P + EQ +V NR+STA +  +QGQ+VRSFTS K    DFTC  +SP+G W+YCVGED  + CF   T ++E++L+V +K+VIGV HHPH NL+ATFS +G L+LWK
Sbjct:  120 TTECIHTFKPAVG-SVATDIAVNSVHPIPKNMEQFVVCNRSSTAVIMNMQGQIVRSFTSGKREGGDFTCCCLSPRGEWIYCVGEDMTLYCFSTSTGKLEQSLQVHEKDVIGVKHHPHNNLIATFSEDGQLRLWK 252          
BLAST of mRNA_H-elongata_contig164187.4056.1 vs. uniprot
Match: A0A4Z2E2F5_9TELE (Smu-1 suppressor of mec-8 and unc-52 protein homolog n=2 Tax=Euteleostomi TaxID=117571 RepID=A0A4Z2E2F5_9TELE)

HSP 1 Score: 148 bits (374), Expect = 2.160e-43
Identity = 68/139 (48.92%), Postives = 97/139 (69.78%), Query Frame = 0
Query:    1 VWDAKTTENLHTFHPALSIGTHTEASVHTVFPLPGSTEQVLVSNRTSTAFLCTLQGQVVRSFTSPKTVRADFTCASMSPKGRWVYCVGEDGEMLCFDAGTAEMERALKVSDKEVIGVAHHPHRNLVATFSNEGLLKLWK 139
            +W+ KTTE  +TF P L     T+ +V+ V  LP + E  +V NR++T  +  +QGQ+VRSF+S K    DF C ++SP+G W+YCVGED  + CF   T ++ER L V +K+VIG+AHHPH+NL++T+S +GLLKLWK
Sbjct:    1 MWNMKTTECSNTFKP-LGTSAGTDITVNNVMQLPKNPEHFVVCNRSNTVVIMNMQGQIVRSFSSGKREGGDFVCCTLSPRGEWIYCVGEDFVLYCFSTVTGKLERTLTVHEKDVIGIAHHPHQNLISTYSEDGLLKLWK 138          
BLAST of mRNA_H-elongata_contig164187.4056.1 vs. uniprot
Match: A0A7S2C2G0_9STRA (WD40 repeat-containing protein SMU1 n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C2G0_9STRA)

HSP 1 Score: 147 bits (372), Expect = 1.190e-42
Identity = 71/143 (49.65%), Postives = 99/143 (69.23%), Query Frame = 0
Query:    1 VWDAKTTENLHTFHPALSIGTHT-EASVHTVFPLPGSTEQVLVSNRTSTAFLCTLQGQVVRSFTSPKTVRADFTCASMSPKGRWVYCVGEDGEMLCFDAGTAE---MERALKVSDKEVIGVAHHPHRNLVATFSNEGLLKLWK 139
            VW+ +T +   TF  +L     T E S+HT+ P+PG+ +  L  NRTSTA + TLQGQVVRSF+S K    DF C ++SP+G+W YC GEDG++  FD   +E   +E  +KV+DK++IG+ HHPHRNL+AT + +G+LKLWK
Sbjct:   29 VWELRTQDCALTFRLSLGSSHATAETSIHTLVPMPGTPDHFLAVNRTSTAHVVTLQGQVVRSFSSGKATGGDFVCGTVSPQGKWAYCAGEDGKVYVFDLSHSEGAQLEHIVKVADKDLIGICHHPHRNLLATHAADGMLKLWK 171          
BLAST of mRNA_H-elongata_contig164187.4056.1 vs. uniprot
Match: UPI000549DDA6 (WD40 repeat-containing protein SMU1 n=1 Tax=Meleagris gallopavo TaxID=9103 RepID=UPI000549DDA6)

HSP 1 Score: 147 bits (371), Expect = 2.630e-42
Identity = 69/139 (49.64%), Postives = 98/139 (70.50%), Query Frame = 0
Query:    1 VWDAKTTENLHTFHPALSIGTHTEASVHTVFPLPGSTEQVLVSNRTSTAFLCTLQGQVVRSFTSPKTVRADFTCASMSPKGRWVYCVGEDGEMLCFDAGTAEMERALKVSDKEVIGVAHHPHRNLVATFSNEGLLKLWK 139
            VW+ KTTE  +TF  +L     T+ +V++V  LP + E  +V NR++T  +  +QGQ+VRSF+S K    DF C ++SP+G W+YCVGED  + CF   T ++ER L V +K+VIG+AHHPH+NL+AT+S +GLLKLWK
Sbjct:   49 VWNVKTTECSNTFK-SLGSTAGTDITVNSVILLPKNPEHFVVCNRSNTVVIMNMQGQIVRSFSSGKREGGDFVCCALSPRGEWIYCVGEDFVLYCFSTVTGKLERTLTVHEKDVIGIAHHPHQNLIATYSEDGLLKLWK 186          
BLAST of mRNA_H-elongata_contig164187.4056.1 vs. uniprot
Match: A0A835IKA6_9MAGN (WD40 repeat-containing protein SMU1 n=1 Tax=Coptis chinensis TaxID=261450 RepID=A0A835IKA6_9MAGN)

HSP 1 Score: 146 bits (368), Expect = 6.090e-42
Identity = 71/140 (50.71%), Postives = 97/140 (69.29%), Query Frame = 0
Query:    1 VWDAKTTENLHTFHPALSIGTHTEASVHTVFPLPGSTEQVLVSNRTSTAFLCTLQGQVVRSFTSPKTVRADFTCASMSPKGRWVYCVGEDGEMLCFDAGTAEMERALKVSDKEVIGVAHHPHRNLVATFSNEGLLKLWKS 140
            VWD KTT+ L TF P   +    +ASV++V   P + E ++V N+TS+ +L TLQGQVV+SF+S K    DF  A +SPKG W+YCVGED  + CF   + ++E  +KV +K+VIGV HHPHRNLVAT+S +  +KLWK+
Sbjct:   42 VWDTKTTDCLQTFKPPPPLRGG-DASVNSVHLFPKNPEHIIVCNKTSSIYLMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNVYCFSYQSGKLENLIKVHEKDVIGVTHHPHRNLVATYSEDCTMKLWKA 180          
BLAST of mRNA_H-elongata_contig164187.4056.1 vs. uniprot
Match: A0A212CMV6_CEREH (WD40 repeat-containing protein SMU1 n=1 Tax=Cervus elaphus hippelaphus TaxID=46360 RepID=A0A212CMV6_CEREH)

HSP 1 Score: 146 bits (369), Expect = 1.450e-41
Identity = 68/139 (48.92%), Postives = 98/139 (70.50%), Query Frame = 0
Query:    1 VWDAKTTENLHTFHPALSIGTHTEASVHTVFPLPGSTEQVLVSNRTSTAFLCTLQGQVVRSFTSPKTVRADFTCASMSPKGRWVYCVGEDGEMLCFDAGTAEMERALKVSDKEVIGVAHHPHRNLVATFSNEGLLKLWK 139
            +W+ KTTE  +TF  +L     T+ +V++V  LP + E  +V NR++T  +  +QGQ+VRSF+S K    DF C ++SP+G W+YCVGED  + CF   T ++ER L V +K+VIG+AHHPH+NL+AT+S +GLLKLWK
Sbjct:   84 IWNMKTTECSNTFK-SLGSTAGTDITVNSVILLPKNPEHFVVCNRSNTVVIMNMQGQIVRSFSSGKREGGDFVCCALSPRGEWIYCVGEDFVLYCFSTVTGKLERTLTVHEKDVIGIAHHPHQNLIATYSEDGLLKLWK 221          
BLAST of mRNA_H-elongata_contig164187.4056.1 vs. uniprot
Match: UPI0003F0D5E3 (WD40 repeat-containing protein SMU1-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F0D5E3)

HSP 1 Score: 152 bits (384), Expect = 2.200e-41
Identity = 70/139 (50.36%), Postives = 98/139 (70.50%), Query Frame = 0
Query:    1 VWDAKTTENLHTFHPALSIGTHTEASVHTVFPLPGSTEQVLVSNRTSTAFLCTLQGQVVRSFTSPKTVRADFTCASMSPKGRWVYCVGEDGEMLCFDAGTAEMERALKVSDKEVIGVAHHPHRNLVATFSNEGLLKLWK 139
            VW+ K+TE  +TF       T  + +V++V P+P +TEQ +V NR++T  +  +QGQ+VRSF+S K    DF CA++SP+G W+YCVGED  + CF   T ++ER L V DK+VIG+ HHPH NL+AT+S +GLLKLWK
Sbjct:  334 VWNVKSTECTNTFKSLGGTST-ADITVNSVHPVPRNTEQFVVCNRSNTVVIMNMQGQIVRSFSSGKREGGDFVCATISPRGEWIYCVGEDLVLYCFSTNTGKLERTLNVHDKDVIGIVHHPHNNLIATYSEDGLLKLWK 471          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig164187.4056.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FX60_ECTSI9.850e-7886.67WD40 repeat-containing protein SMU1 n=2 Tax=Ectoca... [more]
A0A7S3XY04_HETAK2.420e-5062.39Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
W7TTZ3_9STRA1.380e-4652.86WD40 repeat-containing protein SMU1 n=1 Tax=Nannoc... [more]
A0A7D9I5T5_PARCT2.330e-4452.99WD40 repeat-containing protein SMU1 n=2 Tax=Paramu... [more]
A0A4Z2E2F5_9TELE2.160e-4348.92Smu-1 suppressor of mec-8 and unc-52 protein homol... [more]
A0A7S2C2G0_9STRA1.190e-4249.65WD40 repeat-containing protein SMU1 n=1 Tax=Floren... [more]
UPI000549DDA62.630e-4249.64WD40 repeat-containing protein SMU1 n=1 Tax=Meleag... [more]
A0A835IKA6_9MAGN6.090e-4250.71WD40 repeat-containing protein SMU1 n=1 Tax=Coptis... [more]
A0A212CMV6_CEREH1.450e-4148.92WD40 repeat-containing protein SMU1 n=1 Tax=Cervus... [more]
UPI0003F0D5E32.200e-4150.36WD40 repeat-containing protein SMU1-like n=1 Tax=S... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 55..97
e-value: 2.3
score: 14.8
coord: 100..139
e-value: 1.5
score: 15.8
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 1..140
e-value: 2.2E-14
score: 55.3
NoneNo IPR availablePANTHERPTHR22848WD40 REPEAT PROTEINcoord: 1..139
NoneNo IPR availablePANTHERPTHR22848:SF2WD40 REPEAT-CONTAINING PROTEIN SMU1coord: 1..139
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 65..140
score: 9.415
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 1..139

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig164187contigH-elongata_contig164187:238..1364 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig164187.4056.1mRNA_H-elongata_contig164187.4056.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig164187 238..1364 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig164187.4056.1 ID=prot_H-elongata_contig164187.4056.1|Name=mRNA_H-elongata_contig164187.4056.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=141bp
VWDAKTTENLHTFHPALSIGTHTEASVHTVFPLPGSTEQVLVSNRTSTAF
LCTLQGQVVRSFTSPKTVRADFTCASMSPKGRWVYCVGEDGEMLCFDAGT
AEMERALKVSDKEVIGVAHHPHRNLVATFSNEGLLKLWKS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR017986WD40_repeat_dom
IPR036322WD40_repeat_dom_sf