mRNA_H-elongata_contig164187.4056.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig164187.4056.1 vs. uniprot
Match: D7FX60_ECTSI (WD40 repeat-containing protein SMU1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FX60_ECTSI) HSP 1 Score: 248 bits (632), Expect = 9.850e-78 Identity = 117/135 (86.67%), Postives = 127/135 (94.07%), Query Frame = 1
Query: 16 TTENLHTFHPALSIGTHTEASVHTVFPLPGSTEQVLVSNRTSTAFLCTLQGQVVRSFTSPKTVRADFTCASMSPKGRWVYCVGEDGEMLCFDAGTAEMERALKVSDKEVIGVAHHPHRNLVATFSNEGLLKLWKS 420
TTENLHTFHPALSIG+HTEASVHTV PLPGS EQVLVSNRTSTAFLCTLQGQVVRSFTSPK+VRADFTCA +SPKGRWVYC GEDGE+ CFDA T E+E+ LKVS+KE+IG+AHHPHRNL+ATFSNEGLLKLWKS
Sbjct: 382 TTENLHTFHPALSIGSHTEASVHTVRPLPGSAEQVLVSNRTSTAFLCTLQGQVVRSFTSPKSVRADFTCACLSPKGRWVYCAGEDGELFCFDAATTEVEKTLKVSEKEIIGLAHHPHRNLLATFSNEGLLKLWKS 516
BLAST of mRNA_H-elongata_contig164187.4056.1 vs. uniprot
Match: A0A7S3XY04_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XY04_HETAK) HSP 1 Score: 166 bits (419), Expect = 2.420e-50 Identity = 73/117 (62.39%), Postives = 97/117 (82.91%), Query Frame = 1
Query: 70 EASVHTVFPLPGSTEQVLVSNRTSTAFLCTLQGQVVRSFTSPKTVRADFTCASMSPKGRWVYCVGEDGEMLCFDAGTAEMERALKVSDKEVIGVAHHPHRNLVATFSNEGLLKLWKS 420
E +VHTV PLPG+ + LV+ R+STA++CTLQGQVV++F+S K V DF A++SP+G+WVYC GEDG + CF+ T ++++ LKV+DKEVIG+AHHPHRNLVATFS+EG LKLWK+
Sbjct: 15 ETAVHTVLPLPGAADHFLVAARSSTAYVCTLQGQVVKTFSSGKAVGGDFAAAAVSPQGKWVYCAGEDGVLYCFNVATGQLDQVLKVADKEVIGLAHHPHRNLVATFSDEGALKLWKA 131
BLAST of mRNA_H-elongata_contig164187.4056.1 vs. uniprot
Match: W7TTZ3_9STRA (WD40 repeat-containing protein SMU1 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TTZ3_9STRA) HSP 1 Score: 160 bits (405), Expect = 1.380e-46 Identity = 74/140 (52.86%), Postives = 99/140 (70.71%), Query Frame = 1
Query: 1 VWDAKTTENLHTFHPALSIGTHTEASVHTVFPLPGSTEQVLVSNRTSTAFLCTLQGQVVRSFTSPKTVRADFTCASMSPKGRWVYCVGEDGEMLCFDAGTAEMERALKVSDKEVIGVAHHPHRNLVATFSNEGLLKLWKS 420
VWDA+++E LHTF P + EA VHTV PLPG + ++NRTSTA++ T QGQVV+ +S K V DF A++SPKG + +C GEDG + F G ++E +KV +KEVIGVAHHPHRNLV TF +EG+LK+W++
Sbjct: 117 VWDARSSECLHTFRPGVESAVDLEAMVHTVLPLPGGADLFFIANRTSTAYVTTAQGQVVKRMSSGKKVGGDFAAAALSPKGTFAHCAGEDGIVYSFQLGKGDLESFVKVGEKEVIGVAHHPHRNLVVTFGDEGVLKVWRA 256
BLAST of mRNA_H-elongata_contig164187.4056.1 vs. uniprot
Match: A0A7D9I5T5_PARCT (WD40 repeat-containing protein SMU1 n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9I5T5_PARCT) HSP 1 Score: 154 bits (390), Expect = 2.330e-44 Identity = 71/134 (52.99%), Postives = 98/134 (73.13%), Query Frame = 1
Query: 16 TTENLHTFHPALSIGTHTEASVHTVFPLPGSTEQVLVSNRTSTAFLCTLQGQVVRSFTSPKTVRADFTCASMSPKGRWVYCVGEDGEMLCFDAGTAEMERALKVSDKEVIGVAHHPHRNLVATFSNEGLLKLWK 417
TTE +HTF PA+ T+ +V++V P+P + EQ +V NR+STA + +QGQ+VRSFTS K DFTC +SP+G W+YCVGED + CF T ++E++L+V +K+VIGV HHPH NL+ATFS +G L+LWK
Sbjct: 120 TTECIHTFKPAVG-SVATDIAVNSVHPIPKNMEQFVVCNRSSTAVIMNMQGQIVRSFTSGKREGGDFTCCCLSPRGEWIYCVGEDMTLYCFSTSTGKLEQSLQVHEKDVIGVKHHPHNNLIATFSEDGQLRLWK 252
BLAST of mRNA_H-elongata_contig164187.4056.1 vs. uniprot
Match: A0A4Z2E2F5_9TELE (Smu-1 suppressor of mec-8 and unc-52 protein homolog n=2 Tax=Euteleostomi TaxID=117571 RepID=A0A4Z2E2F5_9TELE) HSP 1 Score: 148 bits (374), Expect = 2.160e-43 Identity = 68/139 (48.92%), Postives = 97/139 (69.78%), Query Frame = 1
Query: 1 VWDAKTTENLHTFHPALSIGTHTEASVHTVFPLPGSTEQVLVSNRTSTAFLCTLQGQVVRSFTSPKTVRADFTCASMSPKGRWVYCVGEDGEMLCFDAGTAEMERALKVSDKEVIGVAHHPHRNLVATFSNEGLLKLWK 417
+W+ KTTE +TF P L T+ +V+ V LP + E +V NR++T + +QGQ+VRSF+S K DF C ++SP+G W+YCVGED + CF T ++ER L V +K+VIG+AHHPH+NL++T+S +GLLKLWK
Sbjct: 1 MWNMKTTECSNTFKP-LGTSAGTDITVNNVMQLPKNPEHFVVCNRSNTVVIMNMQGQIVRSFSSGKREGGDFVCCTLSPRGEWIYCVGEDFVLYCFSTVTGKLERTLTVHEKDVIGIAHHPHQNLISTYSEDGLLKLWK 138
BLAST of mRNA_H-elongata_contig164187.4056.1 vs. uniprot
Match: A0A7S2C2G0_9STRA (WD40 repeat-containing protein SMU1 n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C2G0_9STRA) HSP 1 Score: 147 bits (372), Expect = 1.190e-42 Identity = 71/143 (49.65%), Postives = 99/143 (69.23%), Query Frame = 1
Query: 1 VWDAKTTENLHTFHPALSIGTHT-EASVHTVFPLPGSTEQVLVSNRTSTAFLCTLQGQVVRSFTSPKTVRADFTCASMSPKGRWVYCVGEDGEMLCFDAGTAE---MERALKVSDKEVIGVAHHPHRNLVATFSNEGLLKLWK 417
VW+ +T + TF +L T E S+HT+ P+PG+ + L NRTSTA + TLQGQVVRSF+S K DF C ++SP+G+W YC GEDG++ FD +E +E +KV+DK++IG+ HHPHRNL+AT + +G+LKLWK
Sbjct: 29 VWELRTQDCALTFRLSLGSSHATAETSIHTLVPMPGTPDHFLAVNRTSTAHVVTLQGQVVRSFSSGKATGGDFVCGTVSPQGKWAYCAGEDGKVYVFDLSHSEGAQLEHIVKVADKDLIGICHHPHRNLLATHAADGMLKLWK 171
BLAST of mRNA_H-elongata_contig164187.4056.1 vs. uniprot
Match: UPI000549DDA6 (WD40 repeat-containing protein SMU1 n=1 Tax=Meleagris gallopavo TaxID=9103 RepID=UPI000549DDA6) HSP 1 Score: 147 bits (371), Expect = 2.630e-42 Identity = 69/139 (49.64%), Postives = 98/139 (70.50%), Query Frame = 1
Query: 1 VWDAKTTENLHTFHPALSIGTHTEASVHTVFPLPGSTEQVLVSNRTSTAFLCTLQGQVVRSFTSPKTVRADFTCASMSPKGRWVYCVGEDGEMLCFDAGTAEMERALKVSDKEVIGVAHHPHRNLVATFSNEGLLKLWK 417
VW+ KTTE +TF +L T+ +V++V LP + E +V NR++T + +QGQ+VRSF+S K DF C ++SP+G W+YCVGED + CF T ++ER L V +K+VIG+AHHPH+NL+AT+S +GLLKLWK
Sbjct: 49 VWNVKTTECSNTFK-SLGSTAGTDITVNSVILLPKNPEHFVVCNRSNTVVIMNMQGQIVRSFSSGKREGGDFVCCALSPRGEWIYCVGEDFVLYCFSTVTGKLERTLTVHEKDVIGIAHHPHQNLIATYSEDGLLKLWK 186
BLAST of mRNA_H-elongata_contig164187.4056.1 vs. uniprot
Match: A0A835IKA6_9MAGN (WD40 repeat-containing protein SMU1 n=1 Tax=Coptis chinensis TaxID=261450 RepID=A0A835IKA6_9MAGN) HSP 1 Score: 146 bits (368), Expect = 6.090e-42 Identity = 71/140 (50.71%), Postives = 97/140 (69.29%), Query Frame = 1
Query: 1 VWDAKTTENLHTFHPALSIGTHTEASVHTVFPLPGSTEQVLVSNRTSTAFLCTLQGQVVRSFTSPKTVRADFTCASMSPKGRWVYCVGEDGEMLCFDAGTAEMERALKVSDKEVIGVAHHPHRNLVATFSNEGLLKLWKS 420
VWD KTT+ L TF P + +ASV++V P + E ++V N+TS+ +L TLQGQVV+SF+S K DF A +SPKG W+YCVGED + CF + ++E +KV +K+VIGV HHPHRNLVAT+S + +KLWK+
Sbjct: 42 VWDTKTTDCLQTFKPPPPLRGG-DASVNSVHLFPKNPEHIIVCNKTSSIYLMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNVYCFSYQSGKLENLIKVHEKDVIGVTHHPHRNLVATYSEDCTMKLWKA 180
BLAST of mRNA_H-elongata_contig164187.4056.1 vs. uniprot
Match: A0A212CMV6_CEREH (WD40 repeat-containing protein SMU1 n=1 Tax=Cervus elaphus hippelaphus TaxID=46360 RepID=A0A212CMV6_CEREH) HSP 1 Score: 146 bits (369), Expect = 1.450e-41 Identity = 68/139 (48.92%), Postives = 98/139 (70.50%), Query Frame = 1
Query: 1 VWDAKTTENLHTFHPALSIGTHTEASVHTVFPLPGSTEQVLVSNRTSTAFLCTLQGQVVRSFTSPKTVRADFTCASMSPKGRWVYCVGEDGEMLCFDAGTAEMERALKVSDKEVIGVAHHPHRNLVATFSNEGLLKLWK 417
+W+ KTTE +TF +L T+ +V++V LP + E +V NR++T + +QGQ+VRSF+S K DF C ++SP+G W+YCVGED + CF T ++ER L V +K+VIG+AHHPH+NL+AT+S +GLLKLWK
Sbjct: 84 IWNMKTTECSNTFK-SLGSTAGTDITVNSVILLPKNPEHFVVCNRSNTVVIMNMQGQIVRSFSSGKREGGDFVCCALSPRGEWIYCVGEDFVLYCFSTVTGKLERTLTVHEKDVIGIAHHPHQNLIATYSEDGLLKLWK 221
BLAST of mRNA_H-elongata_contig164187.4056.1 vs. uniprot
Match: UPI0003F0D5E3 (WD40 repeat-containing protein SMU1-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F0D5E3) HSP 1 Score: 152 bits (384), Expect = 2.200e-41 Identity = 70/139 (50.36%), Postives = 98/139 (70.50%), Query Frame = 1
Query: 1 VWDAKTTENLHTFHPALSIGTHTEASVHTVFPLPGSTEQVLVSNRTSTAFLCTLQGQVVRSFTSPKTVRADFTCASMSPKGRWVYCVGEDGEMLCFDAGTAEMERALKVSDKEVIGVAHHPHRNLVATFSNEGLLKLWK 417
VW+ K+TE +TF T + +V++V P+P +TEQ +V NR++T + +QGQ+VRSF+S K DF CA++SP+G W+YCVGED + CF T ++ER L V DK+VIG+ HHPH NL+AT+S +GLLKLWK
Sbjct: 334 VWNVKSTECTNTFKSLGGTST-ADITVNSVHPVPRNTEQFVVCNRSNTVVIMNMQGQIVRSFSSGKREGGDFVCATISPRGEWIYCVGEDLVLYCFSTNTGKLERTLNVHDKDVIGIVHHPHNNLIATYSEDGLLKLWK 471 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig164187.4056.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig164187.4056.1 >prot_H-elongata_contig164187.4056.1 ID=prot_H-elongata_contig164187.4056.1|Name=mRNA_H-elongata_contig164187.4056.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=141bp VWDAKTTENLHTFHPALSIGTHTEASVHTVFPLPGSTEQVLVSNRTSTAFback to top mRNA from alignment at H-elongata_contig164187:238..1364- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig164187.4056.1 ID=mRNA_H-elongata_contig164187.4056.1|Name=mRNA_H-elongata_contig164187.4056.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1127bp|location=Sequence derived from alignment at H-elongata_contig164187:238..1364- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig164187:238..1364- >mRNA_H-elongata_contig164187.4056.1 ID=mRNA_H-elongata_contig164187.4056.1|Name=mRNA_H-elongata_contig164187.4056.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=846bp|location=Sequence derived from alignment at H-elongata_contig164187:238..1364- (Himanthalia elongata Himel1 dioecious)back to top |