mRNA_H-elongata_contig164157.4055.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig164157.4055.1
Unique NamemRNA_H-elongata_contig164157.4055.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig164157.4055.1 vs. uniprot
Match: D8LEJ8_ECTSI (Glycerol kinase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEJ8_ECTSI)

HSP 1 Score: 118 bits (296), Expect = 1.140e-29
Identity = 56/64 (87.50%), Postives = 60/64 (93.75%), Query Frame = 1 
Query:    1 TAPEIEDLARSVEDNGGVYFVPAFAGLLAPHWRGDARGLMCGLTAFNTKGHVARAVLESTAFQV 192
            +A EIE LAR+VEDNGGV+FVPAFAGLLAPHWRGDARGLMCGLTA+NTK HV RAVLESTAFQV
Sbjct:  354 SASEIEALARTVEDNGGVFFVPAFAGLLAPHWRGDARGLMCGLTAYNTKAHVVRAVLESTAFQV 417
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BLAST of mRNA_H-elongata_contig164157.4055.1 vs. uniprot
Match: A0A7W1V284_9ACTN (Glycerol kinase n=3 Tax=Propionibacteriales TaxID=85009 RepID=A0A7W1V284_9ACTN)

HSP 1 Score: 106 bits (265), Expect = 1.540e-25
Identity = 49/63 (77.78%), Postives = 54/63 (85.71%), Query Frame = 1 
Query:    1 TAPEIEDLARSVEDNGGVYFVPAFAGLLAPHWRGDARGLMCGLTAFNTKGHVARAVLESTAFQ 189
            TAPEIEDLA SV+DNGG YFVPAF+GL APHWR DARG + GLT F  KGH+ARAVLE+TAFQ
Sbjct:  328 TAPEIEDLAASVDDNGGAYFVPAFSGLFAPHWRSDARGALVGLTRFVNKGHIARAVLEATAFQ 390
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BLAST of mRNA_H-elongata_contig164157.4055.1 vs. uniprot
Match: A0A1M4Y122_STRHI (Glycerol kinase n=3 Tax=Pseudonocardiaceae TaxID=2070 RepID=A0A1M4Y122_STRHI)

HSP 1 Score: 105 bits (263), Expect = 2.990e-25
Identity = 48/63 (76.19%), Postives = 57/63 (90.48%), Query Frame = 1 
Query:    1 TAPEIEDLARSVEDNGGVYFVPAFAGLLAPHWRGDARGLMCGLTAFNTKGHVARAVLESTAFQ 189
            +APEIE LAR+V+DNGG YFVPAFAGL APHWRGDARG++ GLT + TKGH+ARAVLE+TA+Q
Sbjct:  330 SAPEIETLARTVDDNGGCYFVPAFAGLFAPHWRGDARGVIAGLTGYITKGHLARAVLEATAWQ 392
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BLAST of mRNA_H-elongata_contig164157.4055.1 vs. uniprot
Match: UPI001412B162 (glycerol kinase GlpK n=1 Tax=Kineococcus vitellinus TaxID=2696565 RepID=UPI001412B162)

HSP 1 Score: 105 bits (263), Expect = 3.090e-25
Identity = 48/63 (76.19%), Postives = 56/63 (88.89%), Query Frame = 1 
Query:    1 TAPEIEDLARSVEDNGGVYFVPAFAGLLAPHWRGDARGLMCGLTAFNTKGHVARAVLESTAFQ 189
            TAPE+E LAR+VEDNGG YFVPAF+GL APHWR +ARGL+ GLT+F TKGH+ARA LESTA+Q
Sbjct:  336 TAPEVETLARTVEDNGGCYFVPAFSGLFAPHWRAEARGLIIGLTSFVTKGHIARAALESTAWQ 398
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BLAST of mRNA_H-elongata_contig164157.4055.1 vs. uniprot
Match: A0A318LQC5_9PSEU (Glycerol kinase n=1 Tax=Prauserella flavalba TaxID=1477506 RepID=A0A318LQC5_9PSEU)

HSP 1 Score: 105 bits (261), Expect = 5.460e-25
Identity = 49/64 (76.56%), Postives = 55/64 (85.94%), Query Frame = 1 
Query:    1 TAPEIEDLARSVEDNGGVYFVPAFAGLLAPHWRGDARGLMCGLTAFNTKGHVARAVLESTAFQV 192
            TAPEIE LAR+VEDNGG YFVPAF+GL APHWR DARG + GLT +  KGH+ARAVLE+TAFQV
Sbjct:  327 TAPEIETLARTVEDNGGAYFVPAFSGLFAPHWRSDARGALVGLTRYVGKGHLARAVLEATAFQV 390
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BLAST of mRNA_H-elongata_contig164157.4055.1 vs. uniprot
Match: UPI001EDED2DF (glycerol kinase GlpK n=3 Tax=Dactylosporangium TaxID=35753 RepID=UPI001EDED2DF)

HSP 1 Score: 105 bits (261), Expect = 5.460e-25
Identity = 49/63 (77.78%), Postives = 55/63 (87.30%), Query Frame = 1 
Query:    1 TAPEIEDLARSVEDNGGVYFVPAFAGLLAPHWRGDARGLMCGLTAFNTKGHVARAVLESTAFQ 189
            TA E+E LARSV DNGG YFVPAF+GL APHWR DARG++ GLTAF TKGH+ARAVLE+TAFQ
Sbjct:  328 TASEVETLARSVADNGGCYFVPAFSGLFAPHWRSDARGVIAGLTAFVTKGHLARAVLEATAFQ 390
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BLAST of mRNA_H-elongata_contig164157.4055.1 vs. uniprot
Match: H6RV48_BLASD (Glycerol kinase n=1 Tax=Blastococcus saxobsidens (strain DD2) TaxID=1146883 RepID=H6RV48_BLASD)

HSP 1 Score: 105 bits (261), Expect = 5.540e-25
Identity = 49/62 (79.03%), Postives = 54/62 (87.10%), Query Frame = 1 
Query:    4 APEIEDLARSVEDNGGVYFVPAFAGLLAPHWRGDARGLMCGLTAFNTKGHVARAVLESTAFQ 189
            APEIEDLARSVEDNGG Y VPAF+GL APHWR DARG + GLT F TKGH+ARAVLE+TA+Q
Sbjct:  329 APEIEDLARSVEDNGGAYVVPAFSGLFAPHWRADARGAVVGLTRFVTKGHLARAVLEATAYQ 390
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BLAST of mRNA_H-elongata_contig164157.4055.1 vs. uniprot
Match: A0A365ZXM0_9ACTN (Glycerol kinase n=3 Tax=Streptomyces TaxID=1883 RepID=A0A365ZXM0_9ACTN)

HSP 1 Score: 105 bits (261), Expect = 5.620e-25
Identity = 47/63 (74.60%), Postives = 56/63 (88.89%), Query Frame = 1 
Query:    1 TAPEIEDLARSVEDNGGVYFVPAFAGLLAPHWRGDARGLMCGLTAFNTKGHVARAVLESTAFQ 189
            TAPEIEDLAR+V+DNGG YFVPAF+GL APHWR DARG++ GLT + TK H+ARAVLE+TA+Q
Sbjct:  332 TAPEIEDLARTVDDNGGAYFVPAFSGLFAPHWRADARGVIAGLTRYVTKAHIARAVLEATAWQ 394
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BLAST of mRNA_H-elongata_contig164157.4055.1 vs. uniprot
Match: UPI000835BC39 (glycerol kinase GlpK n=1 Tax=Janibacter corallicola TaxID=415212 RepID=UPI000835BC39)

HSP 1 Score: 105 bits (261), Expect = 5.670e-25
Identity = 49/63 (77.78%), Postives = 55/63 (87.30%), Query Frame = 1 
Query:    1 TAPEIEDLARSVEDNGGVYFVPAFAGLLAPHWRGDARGLMCGLTAFNTKGHVARAVLESTAFQ 189
            +APEIEDLA +VEDNGGVYFVPAF+GL APHWR DARG + GLT F  KGH+ARAVLESTA+Q
Sbjct:  330 SAPEIEDLAATVEDNGGVYFVPAFSGLFAPHWRPDARGAILGLTRFANKGHLARAVLESTAYQ 392
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BLAST of mRNA_H-elongata_contig164157.4055.1 vs. uniprot
Match: A0A7W9PK05_9NOCA (Glycerol kinase n=2 Tax=Nocardia TaxID=1817 RepID=A0A7W9PK05_9NOCA)

HSP 1 Score: 105 bits (261), Expect = 5.690e-25
Identity = 49/63 (77.78%), Postives = 56/63 (88.89%), Query Frame = 1 
Query:    1 TAPEIEDLARSVEDNGGVYFVPAFAGLLAPHWRGDARGLMCGLTAFNTKGHVARAVLESTAFQ 189
            TAPEIE LARSV+DNGG Y VPAF+GL APHWR DARGL+ GLT++ TKGHVARAVLE+TA+Q
Sbjct:  325 TAPEIETLARSVDDNGGCYLVPAFSGLYAPHWRSDARGLLIGLTSYVTKGHVARAVLEATAWQ 387
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig164157.4055.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEJ8_ECTSI1.140e-2987.50Glycerol kinase n=2 Tax=Ectocarpus TaxID=2879 RepI... [more]
A0A7W1V284_9ACTN1.540e-2577.78Glycerol kinase n=3 Tax=Propionibacteriales TaxID=... [more]
A0A1M4Y122_STRHI2.990e-2576.19Glycerol kinase n=3 Tax=Pseudonocardiaceae TaxID=2... [more]
UPI001412B1623.090e-2576.19glycerol kinase GlpK n=1 Tax=Kineococcus vitellinu... [more]
A0A318LQC5_9PSEU5.460e-2576.56Glycerol kinase n=1 Tax=Prauserella flavalba TaxID... [more]
UPI001EDED2DF5.460e-2577.78glycerol kinase GlpK n=3 Tax=Dactylosporangium Tax... [more]
H6RV48_BLASD5.540e-2579.03Glycerol kinase n=1 Tax=Blastococcus saxobsidens (... [more]
A0A365ZXM0_9ACTN5.620e-2574.60Glycerol kinase n=3 Tax=Streptomyces TaxID=1883 Re... [more]
UPI000835BC395.670e-2577.78glycerol kinase GlpK n=1 Tax=Janibacter corallicol... [more]
A0A7W9PK05_9NOCA5.690e-2577.78Glycerol kinase n=2 Tax=Nocardia TaxID=1817 RepID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig164157contigH-elongata_contig164157:1237..1428 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score119.4
Seed ortholog evalue6.1e-25
Seed eggNOG ortholog2880.D8LEJ8
KEGG rclassRC00002,RC00017
KEGG koko:K00864
KEGG ReactionR00847
KEGG Pathwayko00561,ko01100,ko03320,ko04626,map00561,map01100,map03320,map04626
GOsGO:0003674,GO:0003824,GO:0004370,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0005975,GO:0006066,GO:0006071,GO:0006072,GO:0006629,GO:0006638,GO:0006639,GO:0006641,GO:0006793,GO:0006796,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008270,GO:0009056,GO:0009058,GO:0009987,GO:0016052,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019400,GO:0019405,GO:0019563,GO:0019637,GO:0019751,GO:0033554,GO:0042802,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044248,GO:0044255,GO:0044262,GO:0044275,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046164,GO:0046167,GO:0046174,GO:0046486,GO:0046872,GO:0046914,GO:0050896,GO:0051716,GO:0052646,GO:0071704,GO:0090407,GO:1901135,GO:1901137,GO:1901575,GO:1901576,GO:1901615,GO:1901616
EggNOG free text desc.glycerol kinase activity
EggNOG OGsCOG0554@1,KOG2517@2759
EC2.7.1.30
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionglycerol kinase
Ec32 orthologEc-21_004370.1
Exons1
Model size192
Cds size192
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929960.2820532-CDS-H-elongata_contig164157:1236..14281622929960.2820532-CDS-H-elongata_contig164157:1236..1428Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig164157 1237..1428 -
1691679224.5435808-CDS-H-elongata_contig164157:1236..14281691679224.5435808-CDS-H-elongata_contig164157:1236..1428Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig164157 1237..1428 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig164157.4055.1prot_H-elongata_contig164157.4055.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig164157 1237..1428 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig164157.4055.1

>prot_H-elongata_contig164157.4055.1 ID=prot_H-elongata_contig164157.4055.1|Name=mRNA_H-elongata_contig164157.4055.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=64bp
TAPEIEDLARSVEDNGGVYFVPAFAGLLAPHWRGDARGLMCGLTAFNTKG
HVARAVLESTAFQV
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mRNA from alignment at H-elongata_contig164157:1237..1428-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig164157.4055.1 ID=mRNA_H-elongata_contig164157.4055.1|Name=mRNA_H-elongata_contig164157.4055.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=192bp|location=Sequence derived from alignment at H-elongata_contig164157:1237..1428- (Himanthalia elongata Himel1 dioecious)
ACCGCCCCCGAGATCGAAGATCTTGCCCGCTCCGTGGAAGACAACGGAGG
CGTTTACTTCGTACCGGCCTTCGCGGGACTGTTGGCCCCTCATTGGCGGG
GGGATGCCAGGGGACTCATGTGCGGACTGACGGCCTTCAACACCAAGGGT
CACGTGGCTAGGGCCGTTCTCGAGTCCACCGCCTTTCAGGTA
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Coding sequence (CDS) from alignment at H-elongata_contig164157:1237..1428-

>mRNA_H-elongata_contig164157.4055.1 ID=mRNA_H-elongata_contig164157.4055.1|Name=mRNA_H-elongata_contig164157.4055.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=384bp|location=Sequence derived from alignment at H-elongata_contig164157:1237..1428- (Himanthalia elongata Himel1 dioecious)
ACCGCCCCCGAGATCGAAGATCTTGCCCGCTCCGTGGAAGACAACGGAGG
CGTTTACTTCGTACCGGCCTTCGCGGGACTGTTGGCCCCTCATTGGCGGG
GGGATGCCAGGGGACTCATGTGCGGACTGACGGCCTTCAACACCAAGGGT
CACGTGGCTAGGGCCGTTCTCGAGTCCACCGCCTTTCAGGTAACCGCCCC
CGAGATCGAAGATCTTGCCCGCTCCGTGGAAGACAACGGAGGCGTTTACT
TCGTACCGGCCTTCGCGGGACTGTTGGCCCCTCATTGGCGGGGGGATGCC
AGGGGACTCATGTGCGGACTGACGGCCTTCAACACCAAGGGTCACGTGGC
TAGGGCCGTTCTCGAGTCCACCGCCTTTCAGGTA
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