mRNA_H-elongata_contig164150.4054.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig164150.4054.1
Unique NamemRNA_H-elongata_contig164150.4054.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig164150.4054.1 vs. uniprot
Match: UPI00103FEA55 (uncharacterized protein LOC114361313 n=2 Tax=Ostrinia furnacalis TaxID=93504 RepID=UPI00103FEA55)

HSP 1 Score: 54.3 bits (129), Expect = 4.540e-6
Identity = 32/117 (27.35%), Postives = 58/117 (49.57%), Query Frame = 1 
Query:    4 VQGAESPGEAWSKLVQHYHASGLKERRRLTVDFYTMKMELGEHPRKFLQRVDKMVKELERVGRPVDPKDVDIVILSGLTPQYDTEVRMLESSSDWPTRDWIERAVINQFDRLESERE 354
            ++ A+S  EAW+ L + Y   GL  R  L    +  K+        +L ++ ++  +L  +  P+D + V ++ILSGLT  YD  +  +E SS   + + I   ++ +  R E + E
Sbjct:   71 IRTAKSAHEAWTILQKTYEGRGLSRRLGLLRSLFNTKLSECSSMEVYLNKIKEISHQLSEIESPLDDELVAVIILSGLTDDYDPLIMAIEHSSSKLSTEVISTKLLQETQRREEKTE 187
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BLAST of mRNA_H-elongata_contig164150.4054.1 vs. uniprot
Match: A0A2A4K3A2_HELVI (CCHC-type domain-containing protein n=1 Tax=Heliothis virescens TaxID=7102 RepID=A0A2A4K3A2_HELVI)

HSP 1 Score: 53.1 bits (126), Expect = 1.240e-5
Identity = 32/118 (27.12%), Postives = 62/118 (52.54%), Query Frame = 1 
Query:    4 VQGAESPGEAWSKLVQHYHASGLKERRRLTVDFYTMKMELGEHPRKFLQRVDKMVKELERVGRPVDPKDVDIVILSGLTPQYDTEVRMLESSSDWPTRDWIERAVINQFDRLESEREI 357
            V+ A++  EAW  L + +   GL  R  L    +  K+        +L ++  + ++L  +G P+D + V +++LSGLT  +D  +  LE+S+     D ++  ++ +F R E E+E+
Sbjct:   74 VRNAKTAFEAWHNLQRAFEDKGLCRRLSLLRSLFGTKLGENTSMEGYLSKITNLSQQLSDIGFPLDDEFVAVLMLSGLTSDFDPLIMALENSNTKLHSDTVKGKLLQEFQRRE-EKEV 190
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BLAST of mRNA_H-elongata_contig164150.4054.1 vs. uniprot
Match: UPI001F8D56D1 (Uncharacterized protein n=1 Tax=Spodoptera exigua TaxID=7107 RepID=UPI001F8D56D1)

HSP 1 Score: 53.1 bits (126), Expect = 1.290e-5
Identity = 28/117 (23.93%), Postives = 59/117 (50.43%), Query Frame = 1 
Query:    4 VQGAESPGEAWSKLVQHYHASGLKERRRLTVDFYTMKMELGEHPRKFLQRVDKMVKELERVGRPVDPKDVDIVILSGLTPQYDTEVRMLESSSDWPTRDWIERAVINQFDRLESERE 354
            ++ A+S  EAW+ L + Y   GL  +  L    +  K+        +L ++ ++  +L  +  P+D + + ++ILSGLT  YD  +  +E+S    T + +   ++ +  R E +++
Sbjct:   69 IRTAKSAYEAWNNLKKTYEGKGLCRKLGLLRSLFGTKLADSNSMDGYLNKIKEVAHQLSEIESPLDDEFIAVIILSGLTSDYDPLIMAIENSGQKLTTEHVSAKLLQETQRREDKQD 185
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BLAST of mRNA_H-elongata_contig164150.4054.1 vs. uniprot
Match: UPI00103F0D66 (uncharacterized protein LOC114362197 n=1 Tax=Ostrinia furnacalis TaxID=93504 RepID=UPI00103F0D66)

HSP 1 Score: 51.2 bits (121), Expect = 2.320e-5
Identity = 28/93 (30.11%), Postives = 48/93 (51.61%), Query Frame = 1 
Query:    4 VQGAESPGEAWSKLVQHYHASGLKERRRLTVDFYTMKMELGEHPRKFLQRVDKMVKELERVGRPVDPKDVDIVILSGLTPQYDTEVRMLESSS 282
            ++ A+S  EAW+ L + Y   GL  R  L    +  K+        +L ++ ++  +L  +  P+D + V ++ILSGLT  YD  +  +E SS
Sbjct:   71 IRTAKSAHEAWTILQKTYEGRGLSRRLGLLRSLFNTKLSECSSMEVYLNKIKEISHQLSEIESPLDDELVAVIILSGLTDDYDPLIMAIEHSS 163
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BLAST of mRNA_H-elongata_contig164150.4054.1 vs. uniprot
Match: A0A2H1VB05_SPOFR (SFRICE_041671 (Fragment) n=1 Tax=Spodoptera frugiperda TaxID=7108 RepID=A0A2H1VB05_SPOFR)

HSP 1 Score: 50.4 bits (119), Expect = 2.770e-5
Identity = 26/93 (27.96%), Postives = 48/93 (51.61%), Query Frame = 1 
Query:    4 VQGAESPGEAWSKLVQHYHASGLKERRRLTVDFYTMKMELGEHPRKFLQRVDKMVKELERVGRPVDPKDVDIVILSGLTPQYDTEVRMLESSS 282
            ++ A+S  EAW  L + Y   GL  R  L    ++ K+        +L ++ ++  +L  +  P+D + V +++LSGLT  YD  +  +E S+
Sbjct:   43 IRTAKSAHEAWKILQKAYEGRGLSRRLGLLRSLFSTKLSENSSMEVYLNKIKEISHQLNEIESPLDDEFVAVIMLSGLTDDYDPLIMAIEHST 135
[Close]
BLAST of mRNA_H-elongata_contig164150.4054.1 vs. uniprot
Match: A0A2H1WMK4_SPOFR (SFRICE_021333 n=1 Tax=Spodoptera frugiperda TaxID=7108 RepID=A0A2H1WMK4_SPOFR)

HSP 1 Score: 51.6 bits (122), Expect = 3.690e-5
Identity = 28/113 (24.78%), Postives = 56/113 (49.56%), Query Frame = 1 
Query:    4 VQGAESPGEAWSKLVQHYHASGLKERRRLTVDFYTMKMELGEHPRKFLQRVDKMVKELERVGRPVDPKDVDIVILSGLTPQYDTEVRMLESSSDWPTRDWIERAVINQFDRLE 342
            ++ A+S  EAW  L + Y   GL  R  L    +  K+        +L ++ ++  +L  +  P+D + V +++LSGLT  YD  +  +E S+   + + I + ++ +  + E
Sbjct:   74 IRTAKSAHEAWKILQKAYEGRGLSRRLGLLRSLFNTKLSENSSMEVYLNKIKEISHQLNEIESPLDDEFVAVIMLSGLTDDYDPLIMAIEHSTSKLSTEIISQKLLQETQKRE 186
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig164150.4054.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
UPI00103FEA554.540e-627.35uncharacterized protein LOC114361313 n=2 Tax=Ostri... [more]
A0A2A4K3A2_HELVI1.240e-527.12CCHC-type domain-containing protein n=1 Tax=Heliot... [more]
UPI001F8D56D11.290e-523.93Uncharacterized protein n=1 Tax=Spodoptera exigua ... [more]
UPI00103F0D662.320e-530.11uncharacterized protein LOC114362197 n=1 Tax=Ostri... [more]
A0A2H1VB05_SPOFR2.770e-527.96SFRICE_041671 (Fragment) n=1 Tax=Spodoptera frugip... [more]
A0A2H1WMK4_SPOFR3.690e-524.78SFRICE_021333 n=1 Tax=Spodoptera frugiperda TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig164150contigH-elongata_contig164150:617..988 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score61.2
Seed ortholog evalue3.9e-07
Seed eggNOG ortholog126957.SMAR001770-PA
EggNOG free text desc.Pfam:UBN2
EggNOG OGs29N3E@1,2RVDW@2759,39QHA@33154,3CR0T@33208,3E76A@33213,423K1@6656
COG Functional cat.S
Best tax levelArthropoda
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size372
Cds size372
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929960.2361546-CDS-H-elongata_contig164150:616..9881622929960.2361546-CDS-H-elongata_contig164150:616..988Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig164150 617..988 -
1691679224.5322359-CDS-H-elongata_contig164150:616..9881691679224.5322359-CDS-H-elongata_contig164150:616..988Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig164150 617..988 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig164150.4054.1prot_H-elongata_contig164150.4054.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig164150 617..988 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig164150.4054.1

>prot_H-elongata_contig164150.4054.1 ID=prot_H-elongata_contig164150.4054.1|Name=mRNA_H-elongata_contig164150.4054.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=124bp
IVQGAESPGEAWSKLVQHYHASGLKERRRLTVDFYTMKMELGEHPRKFLQ
RVDKMVKELERVGRPVDPKDVDIVILSGLTPQYDTEVRMLESSSDWPTRD
WIERAVINQFDRLESEREIEDVE*
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mRNA from alignment at H-elongata_contig164150:617..988-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig164150.4054.1 ID=mRNA_H-elongata_contig164150.4054.1|Name=mRNA_H-elongata_contig164150.4054.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=372bp|location=Sequence derived from alignment at H-elongata_contig164150:617..988- (Himanthalia elongata Himel1 dioecious)
ATCGTCCAAGGAGCTGAGTCGCCCGGGGAAGCGTGGTCAAAGCTCGTGCA
GCACTACCACGCCAGCGGCCTCAAGGAACGACGCCGCCTCACTGTGGACT
TCTATACGATGAAGATGGAACTCGGCGAGCATCCGCGCAAATTTTTGCAG
CGGGTGGACAAGATGGTCAAGGAACTGGAAAGGGTGGGGCGACCGGTGGA
CCCGAAGGACGTGGACATCGTAATTCTGAGCGGCCTCACCCCCCAGTACG
ACACCGAAGTTCGAATGCTGGAGAGCTCATCGGACTGGCCCACTCGAGAT
TGGATAGAACGTGCCGTCATCAACCAGTTCGATCGCCTGGAGTCTGAAAG
AGAGATTGAAGATGTTGAATAA
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Coding sequence (CDS) from alignment at H-elongata_contig164150:617..988-

>mRNA_H-elongata_contig164150.4054.1 ID=mRNA_H-elongata_contig164150.4054.1|Name=mRNA_H-elongata_contig164150.4054.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=744bp|location=Sequence derived from alignment at H-elongata_contig164150:617..988- (Himanthalia elongata Himel1 dioecious)
ATCGTCCAAGGAGCTGAGTCGCCCGGGGAAGCGTGGTCAAAGCTCGTGCA
GCACTACCACGCCAGCGGCCTCAAGGAACGACGCCGCCTCACTGTGGACT
TCTATACGATGAAGATGGAACTCGGCGAGCATCCGCGCAAATTTTTGCAG
CGGGTGGACAAGATGGTCAAGGAACTGGAAAGGGTGGGGCGACCGGTGGA
CCCGAAGGACGTGGACATCGTAATTCTGAGCGGCCTCACCCCCCAGTACG
ACACCGAAGTTCGAATGCTGGAGAGCTCATCGGACTGGCCCACTCGAGAT
TGGATAGAACGTGCCGTCATCAACCAGTTCGATCGCCTGGAGTCTGAAAG
AGAGATTGAAGATGTTGAATAAATCGTCCAAGGAGCTGAGTCGCCCGGGG
AAGCGTGGTCAAAGCTCGTGCAGCACTACCACGCCAGCGGCCTCAAGGAA
CGACGCCGCCTCACTGTGGACTTCTATACGATGAAGATGGAACTCGGCGA
GCATCCGCGCAAATTTTTGCAGCGGGTGGACAAGATGGTCAAGGAACTGG
AAAGGGTGGGGCGACCGGTGGACCCGAAGGACGTGGACATCGTAATTCTG
AGCGGCCTCACCCCCCAGTACGACACCGAAGTTCGAATGCTGGAGAGCTC
ATCGGACTGGCCCACTCGAGATTGGATAGAACGTGCCGTCATCAACCAGT
TCGATCGCCTGGAGTCTGAAAGAGAGATTGAAGATGTTGAATAA
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