mRNA_H-elongata_contig164140.4053.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig164140.4053.1 vs. uniprot
Match: A0A6H5JAW6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAW6_9PHAE) HSP 1 Score: 146 bits (369), Expect = 1.380e-40 Identity = 77/125 (61.60%), Postives = 94/125 (75.20%), Query Frame = 1
Query: 28 KFCWGNLWSLKDLPQSKGVDVRKELVEFHARHYRASAMQLVIQGGQSLDELQDMVVESFSGVP-AGPLGEHQEGRKNEEKYKEEGEESAALAAAGMPFD-ASALGTAFRIQPVRDLHCLNVTWQL 396
KFCWGNL SL++ PQSKGVDVR+ELV+FHA+HYRASAMQLV+QGGQ+LDELQ +V+ +FSG+ A EESA +AAAG+PFD A ALG AFR+QPV+D+H L+VTWQL
Sbjct: 183 KFCWGNLHSLREEPQSKGVDVRQELVDFHAKHYRASAMQLVVQGGQTLDELQALVLSTFSGIAVAAXXXXXXXXXXXXXXXXXLPEESATVAAAGLPFDDAGALGRAFRVQPVKDVHRLHVTWQL 307
BLAST of mRNA_H-elongata_contig164140.4053.1 vs. uniprot
Match: D8LK42_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK42_ECTSI) HSP 1 Score: 114 bits (286), Expect = 5.110e-27 Identity = 67/126 (53.17%), Postives = 82/126 (65.08%), Query Frame = 1
Query: 34 CWGNLWSLKDLPQ--SKGVDVRKELVEFHARHYRASAMQLVIQGGQSLDELQDMVVESFSGVPAGPLGEHQEGRKNEEKYKEEGEESAA--LAAAGMPFD-ASALGTAFRIQPVRDLHCLNVTWQL 396
C L+ LPQ KGVDVR+ELV+FHA+HYRASAMQLV+QGGQ+LDELQ +V+ SFSG+ A +AAAG+PFD A ALG AFR+QPV+D+H L+VTWQL
Sbjct: 55 CEYTLYHFDVLPQHLEKGVDVRQELVDFHAKHYRASAMQLVVQGGQALDELQALVLSSFSGIAAXXXXXXXXXXXXXXXXXXXXXXXXXXXVAAAGLPFDDAGALGRAFRVQPVKDVHRLHVTWQL 180
BLAST of mRNA_H-elongata_contig164140.4053.1 vs. uniprot
Match: A0A7S4VPY0_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VPY0_9STRA) HSP 1 Score: 105 bits (262), Expect = 8.760e-24 Identity = 55/131 (41.98%), Postives = 82/131 (62.60%), Query Frame = 1
Query: 13 DHPYSKFCWGNLWSLKDLPQSKGVDVRKELVEFHARHYRASAMQLVIQGGQSLDELQDMVVESFSGVPAGPLGEHQ---EGRKNEEKYKEEGEESAALAAAGMPFDASALGTAFRIQPVRDLHCLNVTWQL 396
+H + KF WGNL SLK++P+ G+DV +L +F+ ++Y A+ M+LV+ G +LDELQ+ VV FS VPA P GE R N ++E + + GMPF ++L +R+ PVR+ H LN+TWQ+
Sbjct: 144 EHCFGKFSWGNLKSLKEIPEQHGIDVMAQLRKFYNQYYYAANMRLVVIGAYTLDELQEQVVRCFSDVPAHPRGEPSLLDMTRTNANTWEETCR--SGIKDYGMPFAPASLARIYRVVPVRERHSLNITWQV 272
BLAST of mRNA_H-elongata_contig164140.4053.1 vs. uniprot
Match: B8C782_THAPS (Probable metalloprotease (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C782_THAPS) HSP 1 Score: 100 bits (250), Expect = 3.590e-22 Identity = 56/133 (42.11%), Postives = 74/133 (55.64%), Query Frame = 1
Query: 16 HPYSKFCWGNLWSLKDLPQSKGVDVRKELVEFHARHYRASAMQLVIQGGQSLDELQDMVVESFSGVPAGPLGEHQE------GRKNEEKYKEEGEESAALAAAGMPFDASALGTAFRIQPVRDLHCLNVTWQL 396
HP++KF WGN+ SLK+ P+ GVDV KEL E + HY A M+LV+ G LDELQ VV+ FS VP+ P H + G N ++YK +PF S+L +RI PV H L +TWQ+
Sbjct: 179 HPFAKFPWGNMASLKEEPERDGVDVMKELREHYNTHYFAKNMRLVVMAGYELDELQKRVVQYFSDVPSDPRVSHPKSSNNASGTTNLDEYK-------------LPFHPSSLAKIYRIIPVHHRHSLTLTWQI 298
BLAST of mRNA_H-elongata_contig164140.4053.1 vs. uniprot
Match: A0A7S2RW47_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RW47_9STRA) HSP 1 Score: 94.0 bits (232), Expect = 1.070e-21 Identity = 47/138 (34.06%), Postives = 80/138 (57.97%), Query Frame = 1
Query: 16 HPYSKFCWGNLWSLKDLPQSKGVDVRKELVEFHARHYRASAMQLVIQGGQSLDELQDMVVESFSGVPAGPLGEHQEGR-----------KNEEKYKEEGEESAALAAAGMPFDASALGTAFRIQPVRDLHCLNVTWQL 396
HP++ F WGN+ SLK +P++ GV+V ++L +F+ ++Y A M LV+ G +LDEL+ V++ F VP+ P H + + +N + ++ +A GMPF S+L +R+ PV++ H L +TWQ+
Sbjct: 13 HPFANFSWGNIHSLKTVPEANGVNVMEKLRQFYDQYYYAQNMSLVVIGAYTLDELERQVLKCFQIVPSLPRYNHNQNKDDQTSSSLAIQRNNANTWDVSIQNDPIANLGMPFSTSSLAKIYRVIPVKERHNLTITWQV 150
BLAST of mRNA_H-elongata_contig164140.4053.1 vs. uniprot
Match: A0A812MBM0_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812MBM0_9DINO) HSP 1 Score: 95.9 bits (237), Expect = 2.030e-20 Identity = 49/129 (37.98%), Postives = 70/129 (54.26%), Query Frame = 1
Query: 10 EDHPYSKFCWGNLWSLKDLPQSKGVDVRKELVEFHARHYRASAMQLVIQGGQSLDELQDMVVESFSGVPAGPLGEHQEGRKNEEKYKEEGEESAALAAAGMPFDASALGTAFRIQPVRDLHCLNVTWQL 396
E HP+ F WGNL SLK+ P KGVD+ +EL +F HY+A ++L + G +SLD+L+ +VV SFS +P G + E G+PF+ L R++PV+D H L + WQL
Sbjct: 177 ERHPFRNFGWGNLRSLKEEPAQKGVDINEELRKFFLEHYQAPQLRLCVYGVESLDDLETLVVTSFSVLPCGSAPQRAE--------------------RGLPFEVQCLPLLLRVRPVQDTHKLCIAWQL 285
BLAST of mRNA_H-elongata_contig164140.4053.1 vs. uniprot
Match: A0A7S4AQ31_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AQ31_9STRA) HSP 1 Score: 94.0 bits (232), Expect = 9.670e-20 Identity = 55/133 (41.35%), Postives = 74/133 (55.64%), Query Frame = 1
Query: 1 RTNEDHPYSKFCWGNLWSLKDLPQSKGVDVRKELVEFHARHYRASAMQLVIQGGQSLDELQDMVVESFSGVPA-GPLGEHQEGRKNEEKYKEEGEESAALAAAGMPFDASALGTAFRIQPVRDLHCLNVTWQL 396
R+ + HP SKF WGN SLK LP+ G + K L F+ +H+ AS M+LV+ GG LD LQ V++ FS V + P G + ++NE K + G+P S L F I PVRD H L+VTWQ+
Sbjct: 150 RSFDQHPASKFGWGNYHSLKTLPEKDGHEPLKMLRSFYDKHHYASNMRLVVVGGYPLDYLQQQVIKCFSDVRSKDPPGSYSWDQRNESPMK----------SYGLPVAESGLKKIFYIAPVRDRHLLSVTWQI 272
BLAST of mRNA_H-elongata_contig164140.4053.1 vs. uniprot
Match: A0A448YUW5_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YUW5_9STRA) HSP 1 Score: 93.6 bits (231), Expect = 1.320e-19 Identity = 54/133 (40.60%), Postives = 74/133 (55.64%), Query Frame = 1
Query: 1 RTNEDHPYSKFCWGNLWSLKDLPQSKGVDVRKELVEFHARHYRASAMQLVIQGGQSLDELQDMVVESFSGVPA-GPLGEHQEGRKNEEKYKEEGEESAALAAAGMPFDASALGTAFRIQPVRDLHCLNVTWQL 396
R+ E+HP SKF WGN SLK LP+ +G D K L F+ H+ AS M+L + GG LD LQ+ V++ FS + + PLG + + E K + G+P S L F + PVRD H L+VTWQ+
Sbjct: 238 RSFEEHPASKFGWGNYHSLKTLPEKEGHDPLKMLRTFYDEHHYASNMRLAVVGGYPLDYLQEQVLKFFSDIKSKDPLGSYTWDQHYESPMK----------SYGLPMTESGLKKIFYVAPVRDRHSLSVTWQI 360
BLAST of mRNA_H-elongata_contig164140.4053.1 vs. uniprot
Match: W7TFN8_9STRA (N-arginine dibasic convertase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TFN8_9STRA) HSP 1 Score: 93.2 bits (230), Expect = 1.790e-19 Identity = 53/135 (39.26%), Postives = 75/135 (55.56%), Query Frame = 1
Query: 16 HPYSKFCWGNLWSLKDLPQSKGVDVRKELVEFHARHYRASAMQLVIQGGQSLDELQDMVVESFSGV-------PAGPLGEHQEGRKNEEKYKEEGEESAALAAAGMPFDAS-ALGTAFRIQPVRDLHCLNVTWQL 396
HPY++F WGNL SL+D PQ+ G+D+ E+ F+ +HYRA M+LV+ G + LD L++++V +F+GV P+ P + L P D S ALG FRI P RDLH L++TW L
Sbjct: 141 HPYARFAWGNLASLRDAPQAAGLDINAEMRRFYGQHYRAPNMKLVLLGMEDLDTLENILVRTFAGVRGSSSLPPSLP--------------------PSPLQGLPPPMDESNALGWLFRIVPFRDLHELHLTWPL 255
BLAST of mRNA_H-elongata_contig164140.4053.1 vs. uniprot
Match: A0A2H9TLV9_9FUNG (Uncharacterized protein n=1 Tax=Paramicrosporidium saccamoebae TaxID=1246581 RepID=A0A2H9TLV9_9FUNG) HSP 1 Score: 90.9 bits (224), Expect = 1.150e-18 Identity = 48/131 (36.64%), Postives = 74/131 (56.49%), Query Frame = 1
Query: 4 TNEDHPYSKFCWGNLWSLKDLPQSKGVDVRKELVEFHARHYRASAMQLVIQGGQSLDELQDMVVESFSGVPAGPLGEHQEGRKNEEKYKEEGEESAALAAAGMPFDASALGTAFRIQPVRDLHCLNVTWQL 396
++ HPYS F G+L +LK+ P+S+G+D+R L+EF+ +HY ++ M+LV+ G LDELQ+MVVE FS V G +N A GMP D G ++ V+++ ++V+WQL
Sbjct: 260 SSHSHPYSHFGTGSLKTLKEGPESRGIDIRSVLIEFYGKHYSSNLMKLVVFGKNPLDELQNMVVEKFSAV----------GNRN----------FALREWPGMPLDERHFGKLINVRTVKEMRSMHVSWQL 370 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig164140.4053.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig164140.4053.1 >prot_H-elongata_contig164140.4053.1 ID=prot_H-elongata_contig164140.4053.1|Name=mRNA_H-elongata_contig164140.4053.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=132bp RTNEDHPYSKFCWGNLWSLKDLPQSKGVDVRKELVEFHARHYRASAMQLVback to top mRNA from alignment at H-elongata_contig164140:917..1357+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig164140.4053.1 ID=mRNA_H-elongata_contig164140.4053.1|Name=mRNA_H-elongata_contig164140.4053.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=441bp|location=Sequence derived from alignment at H-elongata_contig164140:917..1357+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig164140:917..1357+ >mRNA_H-elongata_contig164140.4053.1 ID=mRNA_H-elongata_contig164140.4053.1|Name=mRNA_H-elongata_contig164140.4053.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=792bp|location=Sequence derived from alignment at H-elongata_contig164140:917..1357+ (Himanthalia elongata Himel1 dioecious)back to top |