mRNA_H-elongata_contig16411.4052.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig16411.4052.1
Unique NamemRNA_H-elongata_contig16411.4052.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig16411.4052.1 vs. uniprot
Match: D7FH32_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH32_ECTSI)

HSP 1 Score: 128 bits (322), Expect = 8.630e-30
Identity = 62/106 (58.49%), Postives = 76/106 (71.70%), Query Frame = 2 
Query:   80 TSNFTLGAELCVVGGYMRTDKDVVGAMQTLGDHDPEGLMKQVDKTRTMRHALVVRYVDCATNSVRQTVALAHPNTPAKELYLMARSIEEKITLRAADWYKNSTLPT 397
            T N  L    C  GG M ++K++ G  QTLGDHDP   M + DKTR MRHALV+RYVDCA+NSV++T A+AHP+ PA +LY MARSIE  IT+R ADW K  +LPT
Sbjct:  247 TFNDILDFLCCPTGGTMYSEKNIHGVTQTLGDHDPGDCMSRWDKTRHMRHALVIRYVDCASNSVKETTAMAHPSIPASQLYEMARSIEANITIRTADWMKCKSLPT 352
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BLAST of mRNA_H-elongata_contig16411.4052.1 vs. uniprot
Match: A0A6H5KA59_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA59_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 5.860e-29
Identity = 61/106 (57.55%), Postives = 75/106 (70.75%), Query Frame = 2 
Query:   80 TSNFTLGAELCVVGGYMRTDKDVVGAMQTLGDHDPEGLMKQVDKTRTMRHALVVRYVDCATNSVRQTVALAHPNTPAKELYLMARSIEEKITLRAADWYKNSTLPT 397
            T N  L    C  GG M ++KD+ G  QTLGDHDP   M + DKTR MRHALV+RYVDCA++SV +T A+AHP+ PA +LY MARSIE  IT+R  DW K+ +LPT
Sbjct:  157 TFNDILEFLCCPTGGSMYSEKDIDGVTQTLGDHDPGDCMSRWDKTRFMRHALVIRYVDCASHSVLETRAMAHPSVPASQLYEMARSIEANITVRMTDWTKSKSLPT 262
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BLAST of mRNA_H-elongata_contig16411.4052.1 vs. uniprot
Match: D7FWP8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWP8_ECTSI)

HSP 1 Score: 114 bits (285), Expect = 1.820e-25
Identity = 56/115 (48.70%), Postives = 78/115 (67.83%), Query Frame = 2 
Query:   56 LLSLY*LHTSNFT--LGAELCVVGGYMRTDKDVVGAMQTLGDHDPEGLMKQVDKTRTMRHALVVRYVDCATNSVRQTVALAHPNTPAKELYLMARSIEEKITLRAADWYKNSTLP 394
            L + Y   T  FT  L    C  GG ++++KD+ G  QTLGDHDP   M + DKTR MRHALV+RY+DCA+NSV++T  +A  +TPA +LY MAR+I+  IT++A +W  + +LP
Sbjct:   95 LTTSYQTSTCTFTDFLDVLCCPTGGTLKSEKDINGVTQTLGDHDPGSCMTRWDKTRFMRHALVIRYLDCASNSVQETTLMALASTPASKLYEMARAIDTNITIKANNWLSHKSLP 209
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16411.4052.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FH32_ECTSI8.630e-3058.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KA59_9PHAE5.860e-2957.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWP8_ECTSI1.820e-2548.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16411contigH-elongata_contig16411:2..3018 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1041
Cds size273
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16411.4052.1prot_H-elongata_contig16411.4052.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig16411 691..2891 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929960.0675836-UTR-H-elongata_contig16411:1..2461622929960.0675836-UTR-H-elongata_contig16411:1..246Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16411 2..246 -
1691679224.4445195-UTR-H-elongata_contig16411:1..2461691679224.4445195-UTR-H-elongata_contig16411:1..246Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16411 2..246 -
1622929960.0839694-UTR-H-elongata_contig16411:294..6901622929960.0839694-UTR-H-elongata_contig16411:294..690Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16411 295..690 -
1691679224.4630206-UTR-H-elongata_contig16411:294..6901691679224.4630206-UTR-H-elongata_contig16411:294..690Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16411 295..690 -
1622929960.124914-UTR-H-elongata_contig16411:2891..30181622929960.124914-UTR-H-elongata_contig16411:2891..3018Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16411 2892..3018 -
1691679224.4920685-UTR-H-elongata_contig16411:2891..30181691679224.4920685-UTR-H-elongata_contig16411:2891..3018Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16411 2892..3018 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929960.0960932-CDS-H-elongata_contig16411:690..8471622929960.0960932-CDS-H-elongata_contig16411:690..847Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16411 691..847 -
1691679224.4724815-CDS-H-elongata_contig16411:690..8471691679224.4724815-CDS-H-elongata_contig16411:690..847Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16411 691..847 -
1622929960.11389-CDS-H-elongata_contig16411:2775..28911622929960.11389-CDS-H-elongata_contig16411:2775..2891Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16411 2776..2891 -
1691679224.4821343-CDS-H-elongata_contig16411:2775..28911691679224.4821343-CDS-H-elongata_contig16411:2775..2891Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16411 2776..2891 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig16411.4052.1

>prot_H-elongata_contig16411.4052.1 ID=prot_H-elongata_contig16411.4052.1|Name=mRNA_H-elongata_contig16411.4052.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=91bp
MRTDKDVVGAMQTLGDHDPEGLMKQVDKTRTMRHALVVRYVDCATNSVRQ
TVALAHPNTPAKELYLMARSIEEKITLRAADWYKNSTLPT*
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mRNA from alignment at H-elongata_contig16411:2..3018-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig16411.4052.1 ID=mRNA_H-elongata_contig16411.4052.1|Name=mRNA_H-elongata_contig16411.4052.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3017bp|location=Sequence derived from alignment at H-elongata_contig16411:2..3018- (Himanthalia elongata Himel1 dioecious)
CTAAAATCACGCCGTGAAGCACGAACTAACAAAGAGGACCCACGCGCGAT
TGCTTTTACTGAGTTTGTATTGACTTCATACATCGAACTTTACCTTAGGC
GCGGAGCTCTGCGTCGTGGGGGGATATATGCGCACAGACAAGGACGTAGT
CGGCGCGATGCAAACGCTGGGTGACCATGATCCGGAGGGACTTATGAAGC
AAGTCGACAAGACGCGCACTATGCGCCACGCTTTGGTCGTTCGGTGAGGA
TTACTGGGGCGGGGGATCAACCCTATTTCCATCATATCTCGCTACACCAT
CTATTTCTAGTACCGGTATTAACCCTTCTGGTACTAGGCTCCTCACAAGA
GTATAAGCGAGTAGCCTACTTTAGGGGGGTTTTGTCGGACAAAAAGGTTC
TTTTTCGTGCAGCTCGCAGCAGTAATCTCGCCGCTCTCAGAGTGCAGATC
GACTGGAAAAGTGCAACAGCACAACAGCCATGACACGAGCTAAACTCACG
CAGGGGCTGCGACAAAGGCCCGCGACAGGCTTTTGGGTTAGTTTTAGAAG
TATGGCATGGCCGCTATTACGAGCCGACAGAAGTCGTATCCTGTATTTTC
TGGTTCGGGTGTGCTTGCTGCTGCCGTCTATTTCCAATATACATTCAACT
GCCCCCCAAAATGCCTAATTTTTCCTACTTGAAGTAATTTCTGTCATCTG
TACTTCTCTAATCCCCTGGGTGTGGAGGCCTTCGGCCTCTTTAACGTACT
CATTGTCGCTGCTGTTGCTGCCTACTGATGGCTCCCGTAAAGCACACAAA
CCATGTCTGTTCTCCCCACGGTAGGATACTATACAGCAGGAGCAGTATAT
TCCTTGTATCATGTATACTTAACGGGGACAGGGGAAAAATATTTTACCTG
TTCAGCTCACCACGAGCGGAAGATAGCAAAATCCGGTTGATCTTCTTGCT
AAATGGGTGACCAACAACAACAACAACAACAACAACAGTATTACGTAGTT
TAATACAATATAGGAGGATCGTACAAGTCTTAAAAACACACATTACCAGG
AAATGCTGTACCTCCGTTACGCGTTGTCAATAATTGCTACACCCTGCTAT
GCTATGCAACAACTGTGACTTGTCAAGTCCTGTATATAGTTGTGAGCTCG
CCCGCATGCAAGTGATCTGGTTGCAGCCTGGCGTTGCGAACAGCAGTTAG
TTGTGTTTTTTTGTTGGCCACAACTCGTTTATATGAGATGGGCTGGCATA
AATATTCTAACACAGCGCACTCAGCGCGATGAGATATCATAGCATTATCT
TGATGAGAGAGGTATCAACTAATCCCACTACTGCGTTGTTATTGTGCGTA
TGTGCTGTTTGCCTTCCTGGGTGGGATGTTTTCCTCGAGTAATGCAAGGG
CATTAGAACGATCAATAAATGCTTGAACCAAATAAGAAAAAAGACACGCT
TCACGCGGTGTATCACAATACACCCTTCTTAGCGAATACCAGTCAGCTCG
ATACAGGAGTATACTCGGCGATTCGTACACACAAAAAATAACAGGGCTTG
GTTGTCGAAACTGTGCGAAATTATGTAACGCTAGTGTATTTCAAGCATTC
CTGTTGGTGGCTGGATTACAGCTGTGTGTTGTGGGCATAATCCATGTGCA
CAAAGCAGACCCTGGAAGTGCGGCGCATTTACATGCTATACAACTCCGTG
GATTTCAGGTCGGTACACACGTTTAATGATCCCCGCATCGAATAGTCCGG
GCTCAAAAAATAAATAAATAAATAAATGCCTAATTCTGATGCCCAATTTT
ACTACGTAAAGGCCTAGAAGGGTTATTTAGGTAAAGTCGCTTCAGATTAA
ATTGCCATTATGACTACTTCAATGAAACGGGGCGTATTATTTGTTTAGTC
GGTATATGGCGTCCAAATGTCGTTCCTAACTTAAGACATTGCGTAGAAGG
GTCAATATCAATCGATGCCACCTGCTGCGGTATTGTAAAAAACCACGTGA
TGATCAAGGCTAATAGCGACGTCTATTCCGCAGGAATCATCATCTAGTAG
CTTCAAGCACATCCAGCTATATTAGTATTCAACCACTCGCTGCGATGGTG
TGTTCGTCGTATCTCCTTCTGCCACAAACTTACTCCGTTGCTGTGCGGCG
TATCGGCCTTTATGGGTGCAGCTATGTCGACTGCGCCACCAATTCGGTGC
GACAGACGGTCGCACTAGCGCACCCCAATACTCCGGCCAAAGAGCTGTAC
CTAATGGCTCGCTCCATCGAAGAGAAGATTACTCTGCGCGCAGCCGACTG
GTACAAGAACAGCACGCTCCCCACGTGAGACTCTAAAGAAATGTGAAATG
GTCATAAGCTGCGGAATCGAGAGTGGATGCCCTGCAGATATAATCGTTTG
AACTTCACGAGGGATGTGAGGGCGGTGTGTTAACACCTGCTGGCTAGGTA
TATATAAACTTTGTATGTATTATTCTTGTAGAGGCAAGGTCCGATCAGGA
TCAGCCATACCTCAAACACTCTCACACAGAGACATCCAAACAGACAGACT
AACAGAATAGAATGTCAGAGAGCACAGACTAGAGGGTCTTGTATAATAAA
TAGATAAGGGATTATAAAACCAGATCCCCTACGTATACATAGCGGCGTAC
TATTTCTTGATCTCTCCGCATCTATCGATAACCCAATCAGCAAACTCAAT
CATCCTCCCTTTGATGGTTGGATTGTCGTAATAACAAGTCCATTAACAAC
ATCCAAGGTAATTCCTATCAAGGCGATTAAGTATCATGCGAATCCTTAAA
AGATATTTACTCCAAAATAATTAAAGCTACCTTCCAACAGCTTGCATTTG
CTTTTGAGATTCCTGGACGCGTCAATATGGAAAGCCGCATCAAATTTCTT
AACTAATGTACCCATTTCTCGCTTTGGAGCGAAAATCATTTCTGTTCGCC
CAAGGTTTTTTGAGGGGGTCATTCAGTTCTACTATTCGTCTACTTATTAT
TATTAAAAAAACCTTAA
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Coding sequence (CDS) from alignment at H-elongata_contig16411:2..3018-

>mRNA_H-elongata_contig16411.4052.1 ID=mRNA_H-elongata_contig16411.4052.1|Name=mRNA_H-elongata_contig16411.4052.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=546bp|location=Sequence derived from alignment at H-elongata_contig16411:2..3018- (Himanthalia elongata Himel1 dioecious)
ATGCGCACAGACAAGGACGTAGTCGGCGCGATGCAAACGCTGGGTGACCA
TGATCCGGAGGGACTTATGAAGCAAGTCGACAAGACGCGCACTATGCGCC
ACGCTTTGGTCGTTCGATGCGCACAGACAAGGACGTAGTCGGCGCGATGC
AAACGCTGGGTGACCATGATCCGGAGGGACTTATGAAGCAAGTCGACAAG
ACGCGCACTATGCGCCACGCTTTGGTCGTTCGCTATGTCGACTGCGCCAC
CAATTCGGTGCGACAGACGGTCGCACTAGCGCACCCCAATACTCCGGCCA
AAGAGCTGTACCTAATGGCTCGCTCCATCGAAGAGAAGATTACTCTGCGC
GCAGCCGACTGGTACAAGAACAGCACGCTCCCCACGTGACTATGTCGACT
GCGCCACCAATTCGGTGCGACAGACGGTCGCACTAGCGCACCCCAATACT
CCGGCCAAAGAGCTGTACCTAATGGCTCGCTCCATCGAAGAGAAGATTAC
TCTGCGCGCAGCCGACTGGTACAAGAACAGCACGCTCCCCACGTGA
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