mRNA_H-elongata_contig164060.4048.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig164060.4048.1
Unique NamemRNA_H-elongata_contig164060.4048.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig164060.4048.1 vs. uniprot
Match: D7FMY2_ECTSI (Hydroxymethylbilane synthase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMY2_ECTSI)

HSP 1 Score: 117 bits (293), Expect = 3.790e-30
Identity = 53/58 (91.38%), Postives = 56/58 (96.55%), Query Frame = 1 
Query:    1 MLPAVAQGAIGIQCRQNDPTFEKYLAGLCHEETKIAVDCERSFLATLDGNCKTPIAGQ 174
            MLPAVAQGAIGIQCR+NDPTFEKYLAGLCH+ETK AVDCER+FLA LDGNCKTPIAGQ
Sbjct:  249 MLPAVAQGAIGIQCRENDPTFEKYLAGLCHQETKTAVDCERAFLAALDGNCKTPIAGQ 306
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BLAST of mRNA_H-elongata_contig164060.4048.1 vs. uniprot
Match: A0A6T6AQC6_DIALT (Hydroxymethylbilane synthase n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A6T6AQC6_DIALT)

HSP 1 Score: 99.8 bits (247), Expect = 1.530e-23
Identity = 48/58 (82.76%), Postives = 50/58 (86.21%), Query Frame = 1 
Query:    1 MLPAVAQGAIGIQCRQNDPTFEKYLAGLCHEETKIAVDCERSFLATLDGNCKTPIAGQ 174
            MLPAVAQGAIGIQCR +D    KYLA L H ETKIAVDCER+FLATLDGNCKTPIAGQ
Sbjct:  242 MLPAVAQGAIGIQCRSDDERSLKYLAALTHAETKIAVDCERAFLATLDGNCKTPIAGQ 299
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BLAST of mRNA_H-elongata_contig164060.4048.1 vs. uniprot
Match: W7UC09_9STRA (Hydroxymethylbilane synthase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7UC09_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 6.060e-23
Identity = 47/58 (81.03%), Postives = 49/58 (84.48%), Query Frame = 1 
Query:    1 MLPAVAQGAIGIQCRQNDPTFEKYLAGLCHEETKIAVDCERSFLATLDGNCKTPIAGQ 174
            MLPAVAQGAIGIQCR +D T  KYLA L H ETK+ VDCERSFLA LDGNCKTPIAGQ
Sbjct:  236 MLPAVAQGAIGIQCRSDDATSLKYLAALNHPETKVCVDCERSFLAELDGNCKTPIAGQ 293
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BLAST of mRNA_H-elongata_contig164060.4048.1 vs. uniprot
Match: A0A6S9LNX4_HETAK (Hydroxymethylbilane synthase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9LNX4_HETAK)

HSP 1 Score: 97.8 bits (242), Expect = 7.790e-23
Identity = 45/58 (77.59%), Postives = 51/58 (87.93%), Query Frame = 1 
Query:    1 MLPAVAQGAIGIQCRQNDPTFEKYLAGLCHEETKIAVDCERSFLATLDGNCKTPIAGQ 174
            MLPAVAQGAIGIQCR+ND + ++YLA L H +TK AVDCER+FL TLDGNCKTPIAGQ
Sbjct:  233 MLPAVAQGAIGIQCRENDESAQRYLAALNHADTKTAVDCERAFLDTLDGNCKTPIAGQ 290
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BLAST of mRNA_H-elongata_contig164060.4048.1 vs. uniprot
Match: A0A0M0J546_9EUKA (Hydroxymethylbilane synthase n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0J546_9EUKA)

HSP 1 Score: 96.3 bits (238), Expect = 4.240e-22
Identity = 43/58 (74.14%), Postives = 50/58 (86.21%), Query Frame = 1 
Query:    1 MLPAVAQGAIGIQCRQNDPTFEKYLAGLCHEETKIAVDCERSFLATLDGNCKTPIAGQ 174
            MLPAVAQGAIGIQCR+ND    +YLA L H++TK+ VDCER+FLA LDGNC+TPIAGQ
Sbjct:  236 MLPAVAQGAIGIQCRENDQKMLRYLAALNHQDTKVCVDCERAFLAALDGNCRTPIAGQ 293
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BLAST of mRNA_H-elongata_contig164060.4048.1 vs. uniprot
Match: A0A7S4BP62_CHRCT (Hydroxymethylbilane synthase n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BP62_CHRCT)

HSP 1 Score: 94.7 bits (234), Expect = 1.490e-21
Identity = 44/58 (75.86%), Postives = 48/58 (82.76%), Query Frame = 1 
Query:    1 MLPAVAQGAIGIQCRQNDPTFEKYLAGLCHEETKIAVDCERSFLATLDGNCKTPIAGQ 174
            MLPAVAQGAIGIQCR+ D     YLA L HE TK+AVDCER+FLA LDGNC+TPIAGQ
Sbjct:  249 MLPAVAQGAIGIQCREGDARIINYLAALNHEPTKVAVDCERAFLAALDGNCRTPIAGQ 306
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BLAST of mRNA_H-elongata_contig164060.4048.1 vs. uniprot
Match: A0A835YJY2_9STRA (Hydroxymethylbilane synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJY2_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 3.300e-21
Identity = 44/58 (75.86%), Postives = 49/58 (84.48%), Query Frame = 1 
Query:    1 MLPAVAQGAIGIQCRQNDPTFEKYLAGLCHEETKIAVDCERSFLATLDGNCKTPIAGQ 174
            MLPAV+QGAIGIQCR+ D T  KYLA L   +TK+AVDCER+FLA LDGNCKTPIAGQ
Sbjct:  234 MLPAVSQGAIGIQCREGDETMLKYLAALNCADTKVAVDCERAFLAALDGNCKTPIAGQ 291
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BLAST of mRNA_H-elongata_contig164060.4048.1 vs. uniprot
Match: A0A7S0LKM4_9EUKA (Hydroxymethylbilane synthase n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LKM4_9EUKA)

HSP 1 Score: 93.2 bits (230), Expect = 5.580e-21
Identity = 43/58 (74.14%), Postives = 48/58 (82.76%), Query Frame = 1 
Query:    1 MLPAVAQGAIGIQCRQNDPTFEKYLAGLCHEETKIAVDCERSFLATLDGNCKTPIAGQ 174
            MLPAVAQGAIGIQCR+ D    +YL  L H ETK+AVDCER+FLA LDGNC+TPIAGQ
Sbjct:  249 MLPAVAQGAIGIQCREGDEKILRYLDALNHPETKVAVDCERAFLAALDGNCRTPIAGQ 306
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BLAST of mRNA_H-elongata_contig164060.4048.1 vs. uniprot
Match: A0A1Z5JU54_FISSO (Hydroxymethylbilane synthase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JU54_FISSO)

HSP 1 Score: 92.8 bits (229), Expect = 5.650e-21
Identity = 44/58 (75.86%), Postives = 46/58 (79.31%), Query Frame = 1 
Query:    1 MLPAVAQGAIGIQCRQNDPTFEKYLAGLCHEETKIAVDCERSFLATLDGNCKTPIAGQ 174
            MLPAVAQGAIGIQCR ND    KY+A L H ETK  VDCER+FL  LDGNCKTPIAGQ
Sbjct:  227 MLPAVAQGAIGIQCRDNDERSLKYIAALNHAETKACVDCERAFLEALDGNCKTPIAGQ 284
[Close]
BLAST of mRNA_H-elongata_contig164060.4048.1 vs. uniprot
Match: B7FFZ8_MEDTR (Hydroxymethylbilane synthase n=1 Tax=Medicago truncatula TaxID=3880 RepID=B7FFZ8_MEDTR)

HSP 1 Score: 89.7 bits (221), Expect = 9.460e-21
Identity = 40/57 (70.18%), Postives = 47/57 (82.46%), Query Frame = 1 
Query:    1 MLPAVAQGAIGIQCRQNDPTFEKYLAGLCHEETKIAVDCERSFLATLDGNCKTPIAG 171
            MLPAVAQGAIGI CR ND    +YLA L HEET++A+ CER+FL TLDG+C+TPIAG
Sbjct:  112 MLPAVAQGAIGIACRSNDDKMAEYLASLNHEETRLAISCERAFLTTLDGSCRTPIAG 168
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig164060.4048.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMY2_ECTSI3.790e-3091.38Hydroxymethylbilane synthase n=2 Tax=Ectocarpus Ta... [more]
A0A6T6AQC6_DIALT1.530e-2382.76Hydroxymethylbilane synthase n=2 Tax=Diacronema lu... [more]
W7UC09_9STRA6.060e-2381.03Hydroxymethylbilane synthase n=2 Tax=Monodopsidace... [more]
A0A6S9LNX4_HETAK7.790e-2377.59Hydroxymethylbilane synthase n=1 Tax=Heterosigma a... [more]
A0A0M0J546_9EUKA4.240e-2274.14Hydroxymethylbilane synthase n=1 Tax=Chrysochromul... [more]
A0A7S4BP62_CHRCT1.490e-2175.86Hydroxymethylbilane synthase n=1 Tax=Chrysotila ca... [more]
A0A835YJY2_9STRA3.300e-2175.86Hydroxymethylbilane synthase n=1 Tax=Tribonema min... [more]
A0A7S0LKM4_9EUKA5.580e-2174.14Hydroxymethylbilane synthase n=1 Tax=Coccolithus b... [more]
A0A1Z5JU54_FISSO5.650e-2175.86Hydroxymethylbilane synthase n=2 Tax=Fistulifera s... [more]
B7FFZ8_MEDTR9.460e-2170.18Hydroxymethylbilane synthase n=1 Tax=Medicago trun... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig164060contigH-elongata_contig164060:76..1061 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.5
Seed ortholog evalue2.3e-24
Seed eggNOG ortholog2880.D7FMY2
Preferred nameHEMC
KEGG rclassRC02317
KEGG koko:K01749
KEGG ReactionR00084
KEGG Pathwayko00860,ko01100,ko01110,ko01120,map00860,map01100,map01110,map01120
KEGG ModuleM00121
GOsGO:0003674,GO:0003824,GO:0004418,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0006950,GO:0006952,GO:0008150,GO:0008152,GO:0009058,GO:0009451,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009605,GO:0009607,GO:0009617,GO:0009941,GO:0009987,GO:0015994,GO:0015995,GO:0016070,GO:0016740,GO:0016765,GO:0018130,GO:0019438,GO:0031967,GO:0031975,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0042742,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046148,GO:0046483,GO:0048046,GO:0050896,GO:0051186,GO:0051188,GO:0051704,GO:0051707,GO:0071704,GO:0090304,GO:0098542,GO:1900865,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.porphobilinogen deaminase
EggNOG OGsCOG0181@1,KOG2892@2759
EC2.5.1.61
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size186
Cds size186
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929959.7033029-CDS-H-elongata_contig164060:75..1591622929959.7033029-CDS-H-elongata_contig164060:75..159Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig164060 76..159 -
1691679224.2856486-CDS-H-elongata_contig164060:75..1591691679224.2856486-CDS-H-elongata_contig164060:75..159Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig164060 76..159 -
1622929959.719703-CDS-H-elongata_contig164060:959..10611622929959.719703-CDS-H-elongata_contig164060:959..1061Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig164060 960..1061 -
1691679224.295071-CDS-H-elongata_contig164060:959..10611691679224.295071-CDS-H-elongata_contig164060:959..1061Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig164060 960..1061 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig164060.4048.1prot_H-elongata_contig164060.4048.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig164060 76..1061 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig164060.4048.1

>prot_H-elongata_contig164060.4048.1 ID=prot_H-elongata_contig164060.4048.1|Name=mRNA_H-elongata_contig164060.4048.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=62bp
MLPAVAQGAIGIQCRQNDPTFEKYLAGLCHEETKIAVDCERSFLATLDGN
CKTPIAGQVIQ*
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mRNA from alignment at H-elongata_contig164060:76..1061-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig164060.4048.1 ID=mRNA_H-elongata_contig164060.4048.1|Name=mRNA_H-elongata_contig164060.4048.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=986bp|location=Sequence derived from alignment at H-elongata_contig164060:76..1061- (Himanthalia elongata Himel1 dioecious)
ATGCTTCCCGCGGTGGCGCAGGGGGCTATTGGTATCCAGTGTCGGCAGAA
CGACCCGACGTTCGAGAAGTACCTTGCGGGACTGTGCCACGAGGAAACGA
AGGTTGGCAACCATGAGGAGCACTTAAATTATATAGGAGTTCGAGATAAA
GAGGGTTTCGATAAGAAACTCGAGTGCTTTGTGTAGCAACGCCATTCATC
ACGAGGTTAACAGCCCGAGATGCCAGGAAGCCGAGTCGTCGACCAAGGAC
GGCGTACAGTTTCGACTGTGTACGTGTTTCTGGTTGGGGGGGGGGGTCAG
GACTGGTCCGGGAGGCAGGGGTCGAAAGAAAACTGCGCTCTGCCCCATCG
TAAAATGTTTTGAGTTGTGTATATTGTTATTGTTATTGTGGTGTAATGTC
TTTTCCCCTCGCGGTTTATGAAATTACTACTATTAATGAACGGTAAGCGG
TCGGTCTACTGTCTGCCCGCTTTGTACCCGATTGTCCTGTCTGCCCGCTG
TCACCCAACTGACTGTTAGATTTTGCCCTTCCCCTCTCCCCCCTATATTT
GCTGCAATTTTGAGTCTAGTATAGTGTAGTCACGCCCTGAACGTGCAACA
TCTGGTTACCCGGTACGTCCAATTTACCCATAGCATGTCCGATTTGATGG
AGCAAGCGCAAGAATGGCTGGATCCTGGTATAATCCTTGTGAAACGTAGC
CCGGCTGTCCAAACCTTGGCATATCTCTCCGTCCCGAAATCGTAGGCCCA
TTAGAAAACGACATACTATGCGTTTGACGCAAGTATCCCGCCCCCGCCCC
CCGAACGCTTTCCTTGCATACGTTTGACGCAAGTATCCCGCCCCCGTCCC
CCGAACGCTTTCCTTGCATAACGATGAACATTTTTTTTCTTCTTGGCGCA
AGATTGCGGTGGACTGTGAGCGTTCTTTCCTGGCAACGTTAGACGGGAAC
TGCAAGACGCCAATCGCAGGACAGGTAATACAATAA
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Coding sequence (CDS) from alignment at H-elongata_contig164060:76..1061-

>mRNA_H-elongata_contig164060.4048.1 ID=mRNA_H-elongata_contig164060.4048.1|Name=mRNA_H-elongata_contig164060.4048.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=372bp|location=Sequence derived from alignment at H-elongata_contig164060:76..1061- (Himanthalia elongata Himel1 dioecious)
ATGCTTCCCGCGGTGGCGCAGGGGGCTATTGGTATCCAGTGTCGGCAGAA
CGACCCGACGTTCGAGAAGTACCTTGCGGGACTGTGCCACGAGGAAACGA
AGATGCTTCCCGCGGTGGCGCAGGGGGCTATTGGTATCCAGTGTCGGCAG
AACGACCCGACGTTCGAGAAGTACCTTGCGGGACTGTGCCACGAGGAAAC
GAAGATTGCGGTGGACTGTGAGCGTTCTTTCCTGGCAACGTTAGACGGGA
ACTGCAAGACGCCAATCGCAGGACAGGTAATACAATAAATTGCGGTGGAC
TGTGAGCGTTCTTTCCTGGCAACGTTAGACGGGAACTGCAAGACGCCAAT
CGCAGGACAGGTAATACAATAA
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