mRNA_H-elongata_contig16393.4041.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig16393.4041.1 vs. uniprot
Match: D7FXE6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE6_ECTSI) HSP 1 Score: 165 bits (417), Expect = 3.480e-46 Identity = 95/203 (46.80%), Postives = 124/203 (61.08%), Query Frame = 1
Query: 1 APRDAAGTKMKVRPSEDGR-RLRWDIDIDLEVPTIVEKLLWGPWDPNEDIWTRQVDMAEQVIIESNGVVFLEQLAPILNPRGGPSK------------YDRGRERSLEGSTVIDETIVVGRLLSELNGVPEVTNDGDILYVFSGLGRAKAGVSKRDDFDVLTGAFSAGGSSCSSIRLEVLQFEEVPGLLATLPKI-PQKGPKV 567
+P+D + + + R S GR RL+W +D+D+ VP +E L+ GPWDP D+W RQ+DMA QVI S GVVF+EQLAPILNPR GP + Y++G + + V E +V+ R+L +LNG PEVT+DGDILYVF G R K G + D + G ++ EVLQFEEVP LL LPKI P +GPKV
Sbjct: 136 SPKDESSGRSRRRSSAPGRLRLKWGVDLDIPVPVALEALVKGPWDPQGDMWKRQLDMAAQVISRSGGVVFMEQLAPILNPREGPPEWYRVCADAGGGFYEKGDKSDISVDAVGGEALVL-RVLLDLNGSPEVTSDGDILYVFPGFARGKRGREGSIEADYHSEESETGSTAAP----EVLQFEEVPRLLEALPKIIPDQGPKV 333
BLAST of mRNA_H-elongata_contig16393.4041.1 vs. uniprot
Match: A0A6H5JLK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLK5_9PHAE) HSP 1 Score: 162 bits (409), Expect = 2.670e-44 Identity = 93/201 (46.27%), Postives = 123/201 (61.19%), Query Frame = 1
Query: 7 RDAAGTKMKVRPSEDGR-RLRWDIDIDLEVPTIVEKLLWGPWDPNEDIWTRQVDMAEQVIIESNGVVFLEQLAPILNPRGGPSK------------YDRGRERSLEGSTVIDETIVVGRLLSELNGVPEVTNDGDILYVFSGLGRAKAGVSKRDDFDVLTGAFSAGGSSCSSIRLEVLQFEEVPGLLATLPK-IPQKGPKV 567
+D + + + + S GR RL+W +D+D+ VP +E L+ GPWDP D+W RQ+DMA QVI S GVVF+EQLAPILNPR GP + Y++G + + V E +V+ R+L +LNG PEVT+DGDILYVF G R K G + D + G ++ EVLQFEEVP LL +LPK IP +GPKV
Sbjct: 175 KDESSGRSRRKSSAPGRLRLKWGVDLDIPVPVALEALVKGPWDPQGDMWERQLDMAAQVISRSGGVVFMEQLAPILNPREGPREWYRVCADAGGDFYEKGDKSGISVDAVGGEALVL-RVLLDLNGSPEVTSDGDILYVFPGFARGKRGREGNIEADYRSEESETGSTAAP----EVLQFEEVPRLLESLPKMIPDQGPKV 370
BLAST of mRNA_H-elongata_contig16393.4041.1 vs. uniprot
Match: A0A6H5K1U7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1U7_9PHAE) HSP 1 Score: 140 bits (353), Expect = 1.060e-37 Identity = 84/186 (45.16%), Postives = 106/186 (56.99%), Query Frame = 1
Query: 85 LEVPTIVEKLLWGPWDPNEDIWTRQVDMAEQVIIESNGVVFLEQLAPILNPRGGPSKYDR--------------GRERSLEGSTV--IDETIVVGRLLSELNGVPEVTNDGDILYVFSGL--------GRAKAGVSKRDDFDVLTGAFSAGGSSCSSIRL--EVLQFEEVPGLLATLPKIPQKGPK 564
+ VP +E+L+ GPWDP D W RQ+DMA QV+ S GVVF+EQLAP+LNPR GP ++ R G+ + +G ++ + +V RLL ELNG PEVT+DGDILYVF G GRA AG + + GG EVLQFEEVPGLL LPK+P +GPK
Sbjct: 8 IHVPLALEELVRGPWDPQRDTWRRQLDMAAQVVQRSGGVVFMEQLAPVLNPREGPPEWYRESATGGGGRGAAGYGKNGATDGISIEAVGGEALVLRLLFELNGAPEVTDDGDILYVFPGFAAKGEACEGRAAAG--EAPTLEAFEAEQRGGGGEEKEFTATPEVLQFEEVPGLLDVLPKMPDQGPK 191
BLAST of mRNA_H-elongata_contig16393.4041.1 vs. uniprot
Match: A0A7S0TJI6_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0TJI6_HEMAN) HSP 1 Score: 63.9 bits (154), Expect = 3.340e-9 Identity = 43/129 (33.33%), Postives = 61/129 (47.29%), Query Frame = 1
Query: 103 VEKLLWGPWDPNEDIWTRQVDMAEQVIIESNGVVFLEQLAPILNPRGGPSKYDRGRERSLEGSTVIDETIVVGRLLSELNGVPEVTNDGDILYVFSGLGRAKAGVSKRDDFDVLTGAFSAGGSSCSSIR 489
V L+G DPN D+ R+ QV+ ++ G V EQ+AP ++P S DRG + DE ++ + + L G PEVT DGDI+YVF L + G GA + GG I+
Sbjct: 53 VFSFLFGDGDPNSDLEDRRYRAIAQVVRDNGGAVTAEQIAPYMDPDRAYSNADRG--------AMPDEAFILPAIQA-LKGTPEVTEDGDIVYVFDELQESAGG-----------GAAALGGMGAREIK 161
BLAST of mRNA_H-elongata_contig16393.4041.1 vs. uniprot
Match: D8LHB2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHB2_ECTSI) HSP 1 Score: 64.7 bits (156), Expect = 7.470e-9 Identity = 39/94 (41.49%), Postives = 55/94 (58.51%), Query Frame = 1
Query: 115 LWGPWDPNEDIWTRQVDMAEQVIIESNGVVFLEQLAPILNPRGGPSKYDRGRERSLEGSTVIDETIVVGRLLSELNGVPEVTNDGDILYVFSGL 396
++G DPN D+ R+V+ A +I + G V EQLAP+L P S S+V+DE+ V+ +L+ L+G PEVT DGDI+YVF L
Sbjct: 211 IFGDGDPNADMDQRRVEAAATLIRGNGGAVSAEQLAPLLTPEALRSS----------DSSVVDESFVLP-ILTALDGAPEVTADGDIVYVFPSL 293
BLAST of mRNA_H-elongata_contig16393.4041.1 vs. uniprot
Match: A0A7S0V774_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0V774_9CRYP) HSP 1 Score: 63.9 bits (154), Expect = 1.070e-8 Identity = 44/129 (34.11%), Postives = 61/129 (47.29%), Query Frame = 1
Query: 103 VEKLLWGPWDPNEDIWTRQVDMAEQVIIESNGVVFLEQLAPILNPRGGPSKYDRGRERSLEGSTVIDETIVVGRLLSELNGVPEVTNDGDILYVFSGLGRAKAGVSKRDDFDVLTGAFSAGGSSCSSIR 489
V L+G DPN D+ R+ QV+ ++ G V EQ+AP +NP R S G + DE ++ + + L G PEVT DGDI+YVF L + G GA + GG S I+
Sbjct: 43 VFSFLFGDGDPNSDLEDRRYRAIAQVVRDNGGAVTAEQIAPYMNP---------DRAYSGSGGAMPDEGFILPAIQA-LKGTPEVTEDGDIVYVFDELQESAGG-----------GAAALGGMSAREIK 150
BLAST of mRNA_H-elongata_contig16393.4041.1 vs. uniprot
Match: A0A7S1DQY1_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DQY1_HEMAN) HSP 1 Score: 63.9 bits (154), Expect = 1.390e-8 Identity = 43/129 (33.33%), Postives = 61/129 (47.29%), Query Frame = 1
Query: 103 VEKLLWGPWDPNEDIWTRQVDMAEQVIIESNGVVFLEQLAPILNPRGGPSKYDRGRERSLEGSTVIDETIVVGRLLSELNGVPEVTNDGDILYVFSGLGRAKAGVSKRDDFDVLTGAFSAGGSSCSSIR 489
V L+G DPN D+ R+ QV+ ++ G V EQ+AP ++P S DRG + DE ++ + + L G PEVT DGDI+YVF L + G GA + GG I+
Sbjct: 266 VFSFLFGDGDPNSDLEDRRYRAIAQVVRDNGGAVTAEQIAPYMDPDRAYSNADRG--------AMPDEAFILPAIQA-LKGTPEVTEDGDIVYVFDELQESAGG-----------GAAALGGMGAREIK 374
BLAST of mRNA_H-elongata_contig16393.4041.1 vs. uniprot
Match: A0A7S1I387_9EUGL (Hypothetical protein n=2 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1I387_9EUGL) HSP 1 Score: 60.5 bits (145), Expect = 2.150e-7 Identity = 42/107 (39.25%), Postives = 60/107 (56.07%), Query Frame = 1
Query: 103 VEKLLWGPWDPNEDIWTRQVDMAEQVIIESNGVVFLEQLAPILNPRGGPSKYDRGRERSLEGSTVIDETIVVGRLLSELNGVPEVTNDGDILYVFSGLGRAKAGVSK 423
V ++G +PN + R+ M QVI +++G V EQLAP L P S + R + S V+DE V G +L+ NG EVT+ GDI+YVF L R+ +G S+
Sbjct: 304 VYSFVFGDGNPNYRLDERRYQMIAQVIRDNDGAVVAEQLAPYLEPP--ESWFQRSPD-----SVVVDEAFV-GPVLTRFNGHAEVTDQGDIVYVFDDL-RSTSGKSR 401
BLAST of mRNA_H-elongata_contig16393.4041.1 vs. uniprot
Match: A0A2V3IJC2_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IJC2_9FLOR) HSP 1 Score: 58.9 bits (141), Expect = 7.000e-7 Identity = 36/95 (37.89%), Postives = 47/95 (49.47%), Query Frame = 1
Query: 103 VEKLLWGPWDPNEDIWTRQVDMAEQVIIESNGVVFLEQLAPILNPRGGPSKYDRGRERSLEGSTVIDETIVVGRLLSELNGVPEVTNDGDILYVF 387
V ++G DPNE TRQ +I + G V EQLAP L+P + V+DE+ V+ +L NG PEVT GDI+YVF
Sbjct: 249 VYSFVFGDGDPNEQFETRQYRTIAAIIRSNKGAVTAEQLAPYLDP-------------TFRDGNVVDESYVLP-VLQRFNGHPEVTQQGDIIYVF 329
BLAST of mRNA_H-elongata_contig16393.4041.1 vs. uniprot
Match: A0A7S2PD57_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PD57_9STRA) HSP 1 Score: 58.5 bits (140), Expect = 9.170e-7 Identity = 32/91 (35.16%), Postives = 55/91 (60.44%), Query Frame = 1
Query: 115 LWGPWDPNEDIWTRQVDMAEQVIIESNGVVFLEQLAPILNPRGGPSKYDRGRERSLEGSTVIDETIVVGRLLSELNGVPEVTNDGDILYVF 387
++G DPN D+ R++ + ++I ++ G V EQLAP + P D G E +DE+ V+ ++++L+G P+VT++GDI+YVF
Sbjct: 123 VFGDGDPNGDVEERRLALVGEMIRQNGGAVTAEQLAPFCDD--APMPLDNGEEER----AYVDESFVLP-IVTQLDGEPQVTDEGDIVYVF 206 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16393.4041.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig16393.4041.1 >prot_H-elongata_contig16393.4041.1 ID=prot_H-elongata_contig16393.4041.1|Name=mRNA_H-elongata_contig16393.4041.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=180bp MKVRPSEDGRRLRWDIDIDLEVPTIVEKLLWGPWDPNEDIWTRQVDMAEQback to top mRNA from alignment at H-elongata_contig16393:83..1702- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig16393.4041.1 ID=mRNA_H-elongata_contig16393.4041.1|Name=mRNA_H-elongata_contig16393.4041.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1620bp|location=Sequence derived from alignment at H-elongata_contig16393:83..1702- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig16393:83..1702- >mRNA_H-elongata_contig16393.4041.1 ID=mRNA_H-elongata_contig16393.4041.1|Name=mRNA_H-elongata_contig16393.4041.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1080bp|location=Sequence derived from alignment at H-elongata_contig16393:83..1702- (Himanthalia elongata Himel1 dioecious)back to top |