mRNA_H-elongata_contig16392.4040.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig16392.4040.1 vs. uniprot
Match: A0A6H5KQ21_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ21_9PHAE) HSP 1 Score: 337 bits (865), Expect = 1.090e-91 Identity = 350/741 (47.23%), Postives = 405/741 (54.66%), Query Frame = 3
Query: 3 VHPRFTFTGAVAALHKLKAIHFLKHRHRHEAEAIPTNLDLPFDCEELTCLKAGLVTVLNALPKGALKGGDLAVLGTQGVHGDQGL------GSSPDSQWTPILRESWVQHVTSATSSREVMEALLLLESCIDPKWLKPWYLTVQEKMPSTSYLLRLSTPAAVALHLFSLDRAILYDKVSTAAHRGARLRNGTQLRGRTGASGNDDGDADAKDFLGANLRRSRTSAQASVLAASNTLS------KPRGRQSRTSRAAEAGGSWAAISPPRRGRRSSVSREPAKAYSRDLSPGSWEEDDXXXXXXXXXXXXXXXXXXXXXSGRTRKARGVRRGRGRSVPEESDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTDSGGMGVEEAEAQEXXXXXXXXXXXXXXXMKRKAAAMAGATAAAPVPAVDVDVPTTWDCPTCTVDNELTNTKCHLCGERRPASAIPGGARKRRRQLTARLGTDHGGGSXXXXXXXXXXXXXXXXGGDVSAGSSRPRGSGRRGARXXXXXXXXXXXXXXXXXXXXXXXXGTSTVAAATASSRQRRNVARVNYAEDKEXXXXXXXXXXXXXXAVSAQGRARGGRGGHQARQGPLRLKEELRRGGGKDEEGLAVEVRAFRGRVRSVIQSFSGEEFALHFREPVDLNLYPSYVYAVKEPMDLSTILFNLRGGEYDVPKTGHDLLLRHIDLIPSNCTIFNGKDAKITQNARLVARTILGGLSE 2189
V PRFT+TGAVAALHKL+A+ +LK RHR E+EA+ +LDL FDC+EL CLK GL T+LNALPKGA K G L +G+ Q ++ S WTP LRE WV V SAT +++MEALLLLE C+D KWLKPWY Q+KM S +LLRLSTPAAVAL LF+LDRAILYDKV+T A RG+RLRNG QLRGR+ AS GD A L + RG R + PPRRGR +++ + SRDLSPGSWEE XXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX G GV++ D PTTW CPTCTVDNEL + KC +C +RRPA+A+P G XXXXXXXXXXXXXXXXXX RQRR VARVNYAED + XXXXXXXXX G A+ + R PL LK+ELRRG +E L +VR FR VRS ++ S E + LHFR+ VDL YP Y VKEPMDL+ ILF LR GEYD + G LLLR I+LIP NC FNGK +I+QNA +AR ++G L +
Sbjct: 2642 VSPRFTYTGAVAALHKLRAVPYLKQRHREESEAVEVDLDLRFDCDELECLKMGLFTLLNALPKGAFKEGGLTTDEVEGLSEQQXXXRERLPATTTTSGWTPSLRECWVSQVASATRGQDLMEALLLLELCLDQKWLKPWYRPAQQKMQSAWHLLRLSTPAAVALRLFALDRAILYDKVATRAQRGSRLRNGIQLRGRSSASSRGGGDTKAARALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGRGDDGRNRK------------PPRRGR---PAKKTSGGGSRDLSPGSWEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAESGDGVDD----------------------------------------DALAPTTWSCPTCTVDNELADDKCVVCSKRRPAAALPRGX-------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXGRDRQRRGVARVNYAEDNDVDSDEXXXXXXXXXXXXXXG-AKKSKVVRMGRNAPLPLKDELRRGVA-EEVVLLCDVREFRRVVRSAVKRSSKEAYTLHFRDAVDLVAYPQYTDIVKEPMDLARILFKLRQGEYD-SQEGRKLLLRDINLIPQNCETFNGKGVQISQNAHQLARDLIGRLDD 3253
BLAST of mRNA_H-elongata_contig16392.4040.1 vs. uniprot
Match: D8LI13_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI13_ECTSI) HSP 1 Score: 291 bits (744), Expect = 1.340e-76 Identity = 339/737 (46.00%), Postives = 396/737 (53.73%), Query Frame = 3
Query: 3 VHPRFTFTGAVAALHKLKAIHFLKHRHRHEAEAIPTNLDLPFDCEELTCLKAGLVTVLNALPKGALKGGDLAVLGTQGVHGDQGLGSSPDSQWTPILRESWVQHVTSATSSREVMEALLLLESCIDPKWLKPWYLTVQEKMPSTSYLLRLSTPAAVALHLFSLDRAILYDKVSTAAHRGARLRNGTQLRGRTGASGNDDGDADAKDFLGANLRRSRTSAQASVLAASNTLS------KPRGRQSRTSRAAEAGGSWAAISPPRRGRRSSVSREPAKAYSRDLSPGSWEEDDXXXXXXXXXXXXXXXXXXXXXSGRTRKARGVRRGRGRSVPEESDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTDSGGMGVEEAEAQEXXXXXXXXXXXXXXXMKRKAAAMAGATAAAPVPAVDVDV--PTTWDCPTCTVDNELTNTKCHLCGERRPASAIPGGARKRRRQLTARLGTDHGGGSXXXXXXXXXXXXXXXXGGDVSAGSSRPRGSGRRGARXXXXXXXXXXXXXXXXXXXXXXXXGTSTVAAATASSRQRRNVARVNYAEDKEXXXXXXXXXXXXXXAVSAQGRARGGRGGHQARQGPLRLKEELRRGGGKDEEGLAVEVRAFRGRVRSVIQSFSGEEFALHFREPVDLNLYPSYVYAVKEPMDLSTILFNLRGGEYDVPKTGHDLLLRHIDLIPSNCTIFNGKDAKITQNARLVARTILGGLSE 2189
V PRFT+TGAVAALHKL+A+ +LK RHR E+EA+ +LDL FDC+E LP ++ S WTP LRE WV HV SAT S+++MEALLLLE C+D KWLKPWY Q+KM S +LLRLSTPAAVAL LF+LDRAILYDKV+T A RG+RLRNG QLRGR+ AS GD A + + RG R+ + PPRRGR +++ + SRDLSPGSWE XXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AE+ V VD D PTTW CP CTVDN+L + KC +C +RRPA+A+P G+R XXXXXXXXXXXXXXXXXXXXXXXX ++ RQRR VARVNYAED + XXXXXXXXX A+ + R P+ LK+ELRRG +EE L +VR FR VRS ++ FS E F LHFR+ VDL YP Y VKEPMDL+ ILF LR GEYD + G LLLR I+LIP NC FNGK +I+QNA +AR ++ L +
Sbjct: 2236 VSPRFTYTGAVAALHKLRAVPYLKQRHREESEAVEVDLDLRFDCDE-------------GLPA-----------------------ATTTSGWTPSLRECWVSHVASATRSQDLMEALLLLELCLDQKWLKPWYRPAQQKMQSAWHLLRLSTPAAVALRLFALDRAILYDKVATRAQRGSRLRNGIQLRGRSSASSRGGGDTKAARAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGRGDDGRSRK------------PPRRGR---PAKKTSGGGSRDLSPGSWEXXXXXXXXXXXXXXXXXXXXXXXXX---------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAES---------------------------------VDGVDDDALAPTTWSCPICTVDNDLADDKCVVCSQRRPAAALPRGSRXXXXXXXXXXXXXX---------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLSSGGRDRQRRGVARVNYAEDNDVDSDEXXXXXXXXXXXXXXX-AKKSKVVRSGRNAPVPLKDELRRGVA-EEEVLPGDVREFRRVVRSAVKGFSKEAFTLHFRDAVDLVAYPQYTDIVKEPMDLARILFKLRQGEYD-SQEGRKLLLRDINLIPENCETFNGKGVQISQNAHQLARDLIDRLDD 2837
BLAST of mRNA_H-elongata_contig16392.4040.1 vs. uniprot
Match: A0A4D9D954_9STRA (Uncharacterized protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D954_9STRA) HSP 1 Score: 110 bits (276), Expect = 1.200e-20 Identity = 66/148 (44.59%), Postives = 89/148 (60.14%), Query Frame = 3
Query: 114 LDLPFDCEELTCLKAGLVTVLNALPKGALK------GGDLAVLGTQG---VH---GDQGLGSSPDSQWTPILRESWVQHVTSATSSREVMEALLLLESCIDPKWLKPWYLTVQEKMPSTS-YLLRL-STPAAVALHLFSLDRAILYDK 515
LD+P D +E+ L+ L+ + LP GAL GG +A LG G +H G+ G +P WT L+ W+ H+ A + EVME LLLLESC+ P+WLKPW+ ++ +TS +LLRL +T AA A HLF LD+AILYDK
Sbjct: 1807 LDIPEDADEVVGLRIALLQLKETLPNGALLESPEDLGGSIAHLGGGGSTNIHAGDGEVGPVRAPVCYWTEALQAQWINHLMEAETPHEVMEGLLLLESCLHPEWLKPWFHPLRRSYAATSSHLLRLGTTAAAAAFHLFILDKAILYDK 1954
BLAST of mRNA_H-elongata_contig16392.4040.1 vs. uniprot
Match: A0A7S0SWC1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SWC1_9STRA) HSP 1 Score: 68.2 bits (165), Expect = 6.810e-8 Identity = 52/186 (27.96%), Postives = 89/186 (47.85%), Query Frame = 3
Query: 3 VHPRFTFTGAVAALHKLKAIHFLKHRHRH---EAEAIPTNLDLPFDCEELTCLKAGLVTVLNALPKGALKGGDLAVLGTQGVHGDQGLGSSPD-----------SQWTPILRESWVQHVTSATSSREVMEALLLLESCIDPKWLKPWYLTVQEKMPSTSYLLRLSTPAAVALHLFSLDRAILYDKV 518
V + G++ A+++L A+ + + +R + T LD + E L+ ++T+ ALP G+L V + SS D + W+ IL ++W + S TS +ME LLLLES I +WL + + +P Y ++ + +++AL LF LD+AILY+K+
Sbjct: 222 VEAKNVLCGSIHAIYQLNALKYYNYANRQINMNRNDLKTLLDDITNESEFKALQISILTLYAALPLGSLPT----------VDDENSKNSSLDEVNIANLIAESNNWSDILDQTWRGLIHSTTSLTILMECLLLLESFISKQWLHASNVKLLNALPLPHYAMKSISLSSIALRLFCLDKAILYEKL 397
BLAST of mRNA_H-elongata_contig16392.4040.1 vs. uniprot
Match: A0A418EDJ6_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418EDJ6_9STRA) HSP 1 Score: 60.8 bits (146), Expect = 1.840e-5 Identity = 33/81 (40.74%), Postives = 52/81 (64.20%), Query Frame = 3
Query: 273 SQWTPILRESWVQHVTSATSSREVMEALLLLESCIDPKWLKPWYLTVQEKMPSTSYLLRLSTPAAVALHLFSLDRAILYDK 515
++WTP LR W + ATSSR ++EALL+LE+ I+ ++L P + Q + +T LL +T A+ A+ L++LD A+ Y K
Sbjct: 745 NKWTPALRTGWADLIVHATSSRALLEALLVLEATIENEYLDPTF-KAQSSL-TTKMLLPTATLASAAMRLYALDDALSYVK 823
BLAST of mRNA_H-elongata_contig16392.4040.1 vs. uniprot
Match: A0A397DV83_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397DV83_9STRA) HSP 1 Score: 60.8 bits (146), Expect = 2.010e-5 Identity = 33/81 (40.74%), Postives = 52/81 (64.20%), Query Frame = 3
Query: 273 SQWTPILRESWVQHVTSATSSREVMEALLLLESCIDPKWLKPWYLTVQEKMPSTSYLLRLSTPAAVALHLFSLDRAILYDK 515
++WTP LR W + ATSSR ++EALL+LE+ I+ ++L P + Q + +T LL +T A+ A+ L++LD A+ Y K
Sbjct: 1329 NKWTPALRTGWADLIVHATSSRALLEALLVLEATIENEYLDPTF-KAQSSL-TTKMLLPTATLASAAMRLYALDDALSYVK 1407
BLAST of mRNA_H-elongata_contig16392.4040.1 vs. uniprot
Match: A0A397BJP8_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397BJP8_9STRA) HSP 1 Score: 60.8 bits (146), Expect = 2.020e-5 Identity = 33/81 (40.74%), Postives = 52/81 (64.20%), Query Frame = 3
Query: 273 SQWTPILRESWVQHVTSATSSREVMEALLLLESCIDPKWLKPWYLTVQEKMPSTSYLLRLSTPAAVALHLFSLDRAILYDK 515
++WTP LR W + ATSSR ++EALL+LE+ I+ ++L P + Q + +T LL +T A+ A+ L++LD A+ Y K
Sbjct: 1162 NKWTPALRTGWADLIVHATSSRALLEALLVLEATIENEYLDPTF-KAQSSL-TTKMLLPTATLASAAMRLYALDDALSYVK 1240
BLAST of mRNA_H-elongata_contig16392.4040.1 vs. uniprot
Match: A0A397A7K1_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397A7K1_9STRA) HSP 1 Score: 60.8 bits (146), Expect = 2.150e-5 Identity = 33/81 (40.74%), Postives = 52/81 (64.20%), Query Frame = 3
Query: 273 SQWTPILRESWVQHVTSATSSREVMEALLLLESCIDPKWLKPWYLTVQEKMPSTSYLLRLSTPAAVALHLFSLDRAILYDK 515
++WTP LR W + ATSSR ++EALL+LE+ I+ ++L P + Q + +T LL +T A+ A+ L++LD A+ Y K
Sbjct: 1819 NKWTPALRTGWADLIVHATSSRALLEALLVLEATIENEYLDPTF-KAQSSL-TTKMLLPTATLASAAMRLYALDDALSYVK 1897
BLAST of mRNA_H-elongata_contig16392.4040.1 vs. uniprot
Match: A0A397E5V0_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397E5V0_9STRA) HSP 1 Score: 58.5 bits (140), Expect = 3.380e-5 Identity = 32/86 (37.21%), Postives = 53/86 (61.63%), Query Frame = 3
Query: 273 SQWTPILRESWVQHVTSATSSREVMEALLLLESCIDPKWLKPWY-----LTVQEKMPSTSYLLRLSTPAAVALHLFSLDRAILYDK 515
++WTP LR W + ATSSR ++EALL+LE+ I+ ++L P + LT++ +P+ +T A+ A+ L++LD A+ Y K
Sbjct: 56 NKWTPALRTGWADLIVHATSSRTLLEALLVLEATIENEYLDPTFKAQSSLTIKMLLPT-------ATIASAAMRLYALDDALSYFK 134
BLAST of mRNA_H-elongata_contig16392.4040.1 vs. uniprot
Match: A0A418FZ02_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418FZ02_9STRA) HSP 1 Score: 58.5 bits (140), Expect = 6.710e-5 Identity = 32/86 (37.21%), Postives = 53/86 (61.63%), Query Frame = 3
Query: 273 SQWTPILRESWVQHVTSATSSREVMEALLLLESCIDPKWLKPWY-----LTVQEKMPSTSYLLRLSTPAAVALHLFSLDRAILYDK 515
++WTP LR W + ATSSR ++EALL+LE+ I+ ++L P + LT++ +P+ +T A+ A+ L++LD A+ Y K
Sbjct: 263 NKWTPALRTGWADLIVHATSSRTLLEALLVLEATIENEYLDPTFKAQSSLTIKMLLPT-------ATIASAAMRLYALDDALSYFK 341 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16392.4040.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig16392.4040.1 >prot_H-elongata_contig16392.4040.1 ID=prot_H-elongata_contig16392.4040.1|Name=mRNA_H-elongata_contig16392.4040.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=695bp MEALLLLESCIDPKWLKPWYLTVQEKMPSTSYLLRLSTPAAVALHLFSLDback to top mRNA from alignment at H-elongata_contig16392:246..5936+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig16392.4040.1 ID=mRNA_H-elongata_contig16392.4040.1|Name=mRNA_H-elongata_contig16392.4040.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=5691bp|location=Sequence derived from alignment at H-elongata_contig16392:246..5936+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig16392:246..5936+ >mRNA_H-elongata_contig16392.4040.1 ID=mRNA_H-elongata_contig16392.4040.1|Name=mRNA_H-elongata_contig16392.4040.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=4170bp|location=Sequence derived from alignment at H-elongata_contig16392:246..5936+ (Himanthalia elongata Himel1 dioecious)back to top |