mRNA_H-elongata_contig163825.4036.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig163825.4036.1
Unique NamemRNA_H-elongata_contig163825.4036.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig163825.4036.1 vs. uniprot
Match: A0A6H5L2Q2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2Q2_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 2.610e-17
Identity = 41/47 (87.23%), Postives = 44/47 (93.62%), Query Frame = 1 
Query:    1 QVRLAQRSIPTGLVYRQNEEVLDEVGAGLLQKMLERRDWAGLEGKKV 141
            QVRLAQ+SIPTGLVY+QNEEVL+EVGAG LQKMLE RDW GLEGKKV
Sbjct:  394 QVRLAQKSIPTGLVYKQNEEVLEEVGAGDLQKMLEVRDWTGLEGKKV 440
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BLAST of mRNA_H-elongata_contig163825.4036.1 vs. uniprot
Match: D7G7N7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7N7_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 1.220e-16
Identity = 40/46 (86.96%), Postives = 43/46 (93.48%), Query Frame = 1 
Query:    1 QVRLAQRSIPTGLVYRQNEEVLDEVGAGLLQKMLERRDWAGLEGKK 138
            QVRLAQ+SIPTGLVY+QNEEVL+EVGAG LQKMLE RDW GLEGKK
Sbjct:  332 QVRLAQKSIPTGLVYKQNEEVLEEVGAGDLQKMLEVRDWTGLEGKK 377
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BLAST of mRNA_H-elongata_contig163825.4036.1 vs. uniprot
Match: A0A835ZCU6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCU6_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 3.400e-14
Identity = 34/47 (72.34%), Postives = 42/47 (89.36%), Query Frame = 1 
Query:    1 QVRLAQRSIPTGLVYRQNEEVLDEVGAGLLQKMLERRDWAGLEGKKV 141
            QVRLAQRS+PTGLVY+QNEEVL+ +GA  LQ+MLE RDW+GL G++V
Sbjct:  310 QVRLAQRSVPTGLVYKQNEEVLEAIGAAPLQRMLEARDWSGLAGQRV 356
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BLAST of mRNA_H-elongata_contig163825.4036.1 vs. uniprot
Match: A0A7S0NF62_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0NF62_9CRYP)

HSP 1 Score: 63.9 bits (154), Expect = 1.130e-10
Identity = 34/47 (72.34%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:    1 QVRLAQRSIPTGLVYRQNEEVLDEVGAGLLQKMLERRDWAGLEGKKV 141
            QVRLAQ+SIPTGLVY QNEE L EVGA  LQKML  RDW+ L   KV
Sbjct:  363 QVRLAQKSIPTGLVYTQNEETLMEVGAENLQKMLVARDWSPLTNTKV 409
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BLAST of mRNA_H-elongata_contig163825.4036.1 vs. uniprot
Match: K0SUQ6_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SUQ6_THAOC)

HSP 1 Score: 63.5 bits (153), Expect = 1.560e-10
Identity = 29/47 (61.70%), Postives = 37/47 (78.72%), Query Frame = 1 
Query:    1 QVRLAQRSIPTGLVYRQNEEVLDEVGAGLLQKMLERRDWAGLEGKKV 141
            QVR AQ+ IPTGLVY+QNE++L E+G   L++ML  RDW G+ GKKV
Sbjct:  365 QVRTAQKGIPTGLVYQQNEKILGEIGTEELERMLRLRDWEGVAGKKV 411
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BLAST of mRNA_H-elongata_contig163825.4036.1 vs. uniprot
Match: L1JRB3_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JRB3_GUITC)

HSP 1 Score: 63.2 bits (152), Expect = 1.950e-10
Identity = 33/47 (70.21%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:    1 QVRLAQRSIPTGLVYRQNEEVLDEVGAGLLQKMLERRDWAGLEGKKV 141
            QVRLAQ+SIPTGLVY QNEE L EVGA  LQKML  RDW+ L  +K 
Sbjct:  263 QVRLAQKSIPTGLVYTQNEETLMEVGAENLQKMLVERDWSSLMVRKA 309
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BLAST of mRNA_H-elongata_contig163825.4036.1 vs. uniprot
Match: A0A7S0Z2B5_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0Z2B5_9CRYP)

HSP 1 Score: 61.2 bits (147), Expect = 1.990e-10
Identity = 31/47 (65.96%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:    1 QVRLAQRSIPTGLVYRQNEEVLDEVGAGLLQKMLERRDWAGLEGKKV 141
            QVRLAQ+SIPTGLVY QNEE L+EVG+  LQ+ML  RDW  L   +V
Sbjct:   95 QVRLAQKSIPTGLVYTQNEETLNEVGSDNLQRMLVERDWEELAETRV 141
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BLAST of mRNA_H-elongata_contig163825.4036.1 vs. uniprot
Match: A0A7S0T487_9RHOD (Hypothetical protein n=1 Tax=Erythrolobus madagascarensis TaxID=708628 RepID=A0A7S0T487_9RHOD)

HSP 1 Score: 62.4 bits (150), Expect = 3.990e-10
Identity = 29/45 (64.44%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:    1 QVRLAQRSIPTGLVYRQNEEVLDEVGAGLLQKMLERRDWAGLEGK 135
            QVR AQR IPTGLVYRQNE  L E+G+G L++ML +RDWA L+ +
Sbjct:  399 QVRAAQRVIPTGLVYRQNETTLQEIGSGKLEQMLRKRDWAPLKNR 443
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BLAST of mRNA_H-elongata_contig163825.4036.1 vs. uniprot
Match: A0A7S2RZ18_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RZ18_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 1.020e-9
Identity = 30/47 (63.83%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:    1 QVRLAQRSIPTGLVYRQNEEVLDEVGAGLLQKMLERRDWAGLEGKKV 141
            QVR AQR IPTGLVY+QNE+ L+ VGA  L+KML  RDW+ +E  KV
Sbjct:  411 QVRAAQRGIPTGLVYQQNEKTLNNVGAKKLEKMLRLRDWSDIEDLKV 457
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BLAST of mRNA_H-elongata_contig163825.4036.1 vs. uniprot
Match: A0A7S0TPK1_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0TPK1_HEMAN)

HSP 1 Score: 59.3 bits (142), Expect = 3.560e-9
Identity = 31/47 (65.96%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:    1 QVRLAQRSIPTGLVYRQNEEVLDEVGAGLLQKMLERRDWAGLEGKKV 141
            QVRLAQ+SIPTGLVY QNEE L EVG   LQ+ML  RDW  L   +V
Sbjct:  214 QVRLAQKSIPTGLVYTQNEETLSEVGVEDLQRMLIERDWKQLAETRV 260
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig163825.4036.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L2Q2_9PHAE2.610e-1787.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7N7_ECTSI1.220e-1686.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZCU6_9STRA3.400e-1472.34Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S0NF62_9CRYP1.130e-1072.34Hypothetical protein (Fragment) n=1 Tax=Hanusia ph... [more]
K0SUQ6_THAOC1.560e-1061.70Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
L1JRB3_GUITC1.950e-1070.21Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
A0A7S0Z2B5_9CRYP1.990e-1065.96Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S0T487_9RHOD3.990e-1064.44Hypothetical protein n=1 Tax=Erythrolobus madagasc... [more]
A0A7S2RZ18_9STRA1.020e-963.83Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S0TPK1_HEMAN3.560e-965.96Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig163825contigH-elongata_contig163825:858..998 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.4
Seed ortholog evalue6.1e-14
Seed eggNOG ortholog2880.D7G7N7
EggNOG free text desc.Protein of unknown function (DUF1415)
EggNOG OGs2RXZW@2759,COG3310@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size141
Cds size141
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929958.257121-CDS-H-elongata_contig163825:857..9981622929958.257121-CDS-H-elongata_contig163825:857..998Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig163825 858..998 +
1691679223.5178356-CDS-H-elongata_contig163825:857..9981691679223.5178356-CDS-H-elongata_contig163825:857..998Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig163825 858..998 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig163825.4036.1prot_H-elongata_contig163825.4036.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig163825 858..998 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig163825.4036.1

>prot_H-elongata_contig163825.4036.1 ID=prot_H-elongata_contig163825.4036.1|Name=mRNA_H-elongata_contig163825.4036.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=47bp
QVRLAQRSIPTGLVYRQNEEVLDEVGAGLLQKMLERRDWAGLEGKKV
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mRNA from alignment at H-elongata_contig163825:858..998+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig163825.4036.1 ID=mRNA_H-elongata_contig163825.4036.1|Name=mRNA_H-elongata_contig163825.4036.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=141bp|location=Sequence derived from alignment at H-elongata_contig163825:858..998+ (Himanthalia elongata Himel1 dioecious)
CAGGTACGTCTGGCCCAGAGATCGATCCCTACGGGGCTAGTGTACAGGCA
AAACGAGGAGGTTCTGGATGAGGTCGGCGCCGGCCTGCTGCAGAAAATGC
TTGAGAGGAGAGACTGGGCGGGGCTCGAGGGGAAGAAGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig163825:858..998+

>mRNA_H-elongata_contig163825.4036.1 ID=mRNA_H-elongata_contig163825.4036.1|Name=mRNA_H-elongata_contig163825.4036.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=282bp|location=Sequence derived from alignment at H-elongata_contig163825:858..998+ (Himanthalia elongata Himel1 dioecious)
CAGGTACGTCTGGCCCAGAGATCGATCCCTACGGGGCTAGTGTACAGGCA
AAACGAGGAGGTTCTGGATGAGGTCGGCGCCGGCCTGCTGCAGAAAATGC
TTGAGAGGAGAGACTGGGCGGGGCTCGAGGGGAAGAAGGTGCAGGTACGT
CTGGCCCAGAGATCGATCCCTACGGGGCTAGTGTACAGGCAAAACGAGGA
GGTTCTGGATGAGGTCGGCGCCGGCCTGCTGCAGAAAATGCTTGAGAGGA
GAGACTGGGCGGGGCTCGAGGGGAAGAAGGTG
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