prot_H-elongata_contig16373.4031.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig16373.4031.1
Unique Nameprot_H-elongata_contig16373.4031.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length200
Homology
BLAST of mRNA_H-elongata_contig16373.4031.1 vs. uniprot
Match: A0A6H5JCG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG0_9PHAE)

HSP 1 Score: 209 bits (533), Expect = 1.170e-61
Identity = 119/245 (48.57%), Postives = 156/245 (63.67%), Query Frame = 0
Query:    1 MKRFDVHSTSDIPASP-VDLGPKRKDEPGGDWPVRKAFRGSLWLSTWN------------------------------------------------------TDADYTDKDNSRRLVYGVAVTLGGTVVSHMSKTQRVVSLLTSESEHIPAGEAVKEALFERVVLSCIAPETNEASINVL-DSQRAKALIENPLSSARSKHIDVRFHFIRALFRTRNISVEYVASAKQHADIFTKALSRANFQYH 189
            + RFDV STS IPASP VD+GPKR DE GG+WPVR+A    +W+ST++                                                       DA Y D ++ RR V G+A T+GGTV+SH SKTQ +VSL ++E+E+I AGE VKEALF R VLS IAPET+ +SI VL D+Q A AL++NPLSSARSKHIDVR+HFIR LFR+ +IS+++V++++QHAD+ TKALS+++ QYH
Sbjct:  257 VNRFDVQSTSSIPASPGVDIGPKRDDESGGEWPVREAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLAVYVDASYADAED-RRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGDISIKFVSTSEQHADMLTKALSKSSLQYH 500          
BLAST of mRNA_H-elongata_contig16373.4031.1 vs. uniprot
Match: A0A6H5KJM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJM0_9PHAE)

HSP 1 Score: 200 bits (509), Expect = 1.180e-61
Identity = 117/222 (52.70%), Postives = 146/222 (65.77%), Query Frame = 0
Query:    1 MKRFDVHSTSDIPASPV-DLGPKRKDEPGGDWPVRKAFRGSLWLSTWN---------TDADYTDKDNSRR------------------LVY----GVAVTLGGTVVSHMSKTQRVVSLLTSESEHIPAGEAVKEALFERVVLSCIAPETNEASINVL-DSQRAKALIENPLSSARSKHIDVRFHFIRALFRTRNISVEYVASAKQHADIFTKALSRANFQYH 189
            ++ FDV STS IPASP  DLGPKR+DE GG+WPVR+A    +W+S ++         T A +      R                   + Y    GVA T+GGTVVSH SKTQ +VSL ++E+E+I  GE VK ALF R VLS IAPET+ +SI VL D+Q A AL++NPLSS R+KHIDVRFHFIR LFR+ NISV +V + +QHAD+ TKALSRA+ QYH
Sbjct:    2 VEHFDVQSTSRIPASPGGDLGPKREDEEGGEWPVREAIGSMMWVSNFSRPDVSSAVCTVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGVATTVGGTVVSHGSKTQSIVSLSSTEAEYIATGEGVKGALFVRAVLSFIAPETSGSSIQVLEDNQGAIALVQNPLSSGRTKHIDVRFHFIRGLFRSGNISVNFVPTTEQHADVLTKALSRASLQYH 223          
BLAST of mRNA_H-elongata_contig16373.4031.1 vs. uniprot
Match: A0A6H5KCA5_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCA5_9PHAE)

HSP 1 Score: 195 bits (496), Expect = 2.730e-59
Identity = 117/250 (46.80%), Postives = 150/250 (60.00%), Query Frame = 0
Query:    1 MKRFDVHSTSDIPASP-VDLGPKRKDEPGGDWPVRKAFRGSLWLSTWN------------------------------------------------------TDADYTDKDNSRRLVYGVAVTLGGTVVSHMSKTQRVVSLLTSESEHIPAGEAVKEALFERVVLSCIAPETNEASINVL-DSQRAKALIENPL-----SSARSKHIDVRFHFIRALFRTRNISVEYVASAKQHADIFTKALSRANFQYH 189
            ++RFDV STS IPA+P  DLGPKR+DE GG+WPVR+A    +W+ST++                                                       DA Y D ++ RR V G+A T GGTVVSH SK Q +VSL ++E+EHI AGE VKEALF R VLS +APET  +SI VL D+Q   AL++NPL     SS R+KHIDVRFHFIR LFR+ +I+V++V + +QHAD+ T+ALSRA+ QYH
Sbjct:    2 VERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTED-RRSVSGLATTGGGTVVSHGSKKQSIVSLSSTEAEHIAAGEGVKEALFMRAVLSFVAPETRGSSIQVLEDNQGGMALVQNPLVQNPLSSGRTKHIDVRFHFIRGLFRSGDITVKFVPTTEQHADLLTQALSRASLQYH 250          
BLAST of mRNA_H-elongata_contig16373.4031.1 vs. uniprot
Match: A0A6H5LGF7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LGF7_9PHAE)

HSP 1 Score: 209 bits (533), Expect = 4.070e-59
Identity = 119/245 (48.57%), Postives = 156/245 (63.67%), Query Frame = 0
Query:    1 MKRFDVHSTSDIPASP-VDLGPKRKDEPGGDWPVRKAFRGSLWLSTWN------------------------------------------------------TDADYTDKDNSRRLVYGVAVTLGGTVVSHMSKTQRVVSLLTSESEHIPAGEAVKEALFERVVLSCIAPETNEASINVL-DSQRAKALIENPLSSARSKHIDVRFHFIRALFRTRNISVEYVASAKQHADIFTKALSRANFQYH 189
            + RFDV STS IPASP VD+GPKR DE GG+WPVR+A    +W+ST++                                                       DA Y D ++ RR V G+A T+GGTV+SH SKTQ +VSL ++E+E+I AGE VKEALF R VLS IAPET+ +SI VL D+Q A AL++NPLSSARSKHIDVR+HFIR LFR+ +IS+++V++++QHAD+ TKALS+++ QYH
Sbjct: 1646 VNRFDVQSTSSIPASPGVDIGPKRDDESGGEWPVREAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLEVYVDASYADAED-RRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGDISIKFVSTSEQHADMLTKALSKSSLQYH 1889          
BLAST of mRNA_H-elongata_contig16373.4031.1 vs. uniprot
Match: A0A6H5KQ05_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ05_9PHAE)

HSP 1 Score: 200 bits (509), Expect = 1.490e-58
Identity = 113/233 (48.50%), Postives = 148/233 (63.52%), Query Frame = 0
Query:    1 MKRFDVHSTSDIPASP-VDLGPKRKDEPGGDWPVRKAFRGSLWLSTWN------------------------------------------TDADYTDKDNSRRLVYGVAVTLGGTVVSHMSKTQRVVSLLTSESEHIPAGEAVKEALFERVVLSCIAPETNEASINVLD-SQRAKALIENPLSSARSKHIDVRFHFIRALFRTRNISVEYVASAKQHADIFTKALSRANFQYH 189
            ++RFDV STS IPASP  DLGPK+ DE GG WPVR+A    +W+ST++                                           DA Y D ++ RR V G+A T+GGTV+SH S TQ +VS+ ++E+E+I AGE VKEALF R VLS + PET+ +SI VLD +Q A AL++NPL S R+KHIDVR+HFIR LFR+ +ISV++V + +QHAD+ TKALSR + QYH
Sbjct:  263 VRRFDVQSTSRIPASPGADLGPKQGDEKGGQWPVREAIGSMMWVSTFSRPDVSFAVRAWDAIQKIVGYSKGTRDLGITYQRGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVISHGSNTQSIVSVSSTEAEYIAAGEGVKEALFVRAVLSFVPPETSGSSIEVLDDNQGAIALVQNPLRSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRVSLQYH 494          
BLAST of mRNA_H-elongata_contig16373.4031.1 vs. uniprot
Match: A0A6H5KGN1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGN1_9PHAE)

HSP 1 Score: 205 bits (521), Expect = 4.370e-58
Identity = 118/245 (48.16%), Postives = 153/245 (62.45%), Query Frame = 0
Query:    1 MKRFDVHSTSDIPASP-VDLGPKRKDEPGGDWPVRKAFRGSLWLSTWN------------------------------------------------------TDADYTDKDNSRRLVYGVAVTLGGTVVSHMSKTQRVVSLLTSESEHIPAGEAVKEALFERVVLSCIAPETNEASINVL-DSQRAKALIENPLSSARSKHIDVRFHFIRALFRTRNISVEYVASAKQHADIFTKALSRANFQYH 189
            ++RFDV STS IPA+P  DLGPKR+DE GG+WPVR+A    +W+ST++                                                       DA Y D ++ RR V G+A T+GGTVVSH SKTQ +VSL ++E+E+I AGE VKEALF R VLS +APET+ +SI VL D+Q A AL++NPLSS R+KHIDVR+HFIR LFR+ +ISV++V + +QHAD+ TKALSR + QYH
Sbjct:  602 VERFDVQSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIQVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRVSLQYH 845          
BLAST of mRNA_H-elongata_contig16373.4031.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 204 bits (520), Expect = 2.150e-57
Identity = 118/245 (48.16%), Postives = 153/245 (62.45%), Query Frame = 0
Query:    1 MKRFDVHSTSDIPASP-VDLGPKRKDEPGGDWPVRKAFRGSLWLSTWN------------------------------------------------------TDADYTDKDNSRRLVYGVAVTLGGTVVSHMSKTQRVVSLLTSESEHIPAGEAVKEALFERVVLSCIAPETNEASINVL-DSQRAKALIENPLSSARSKHIDVRFHFIRALFRTRNISVEYVASAKQHADIFTKALSRANFQYH 189
            ++RFDV STS IPA+P  DLGPKR+DE GG+WPVR+A    +W+ST++                                                       DA Y D ++ RR V G+A T+GGTVVSH SKTQ +VSL ++E+E+I AGE VKEALF R VLS +APET+ +SI VL D+Q A AL++NPLSS R+KHIDVR+HFIR LFR+ +ISV++V + +QHAD+ TKALSR + QYH
Sbjct:  994 VERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRVSLQYH 1237          
BLAST of mRNA_H-elongata_contig16373.4031.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 204 bits (520), Expect = 2.250e-57
Identity = 118/245 (48.16%), Postives = 153/245 (62.45%), Query Frame = 0
Query:    1 MKRFDVHSTSDIPASP-VDLGPKRKDEPGGDWPVRKAFRGSLWLSTWN------------------------------------------------------TDADYTDKDNSRRLVYGVAVTLGGTVVSHMSKTQRVVSLLTSESEHIPAGEAVKEALFERVVLSCIAPETNEASINVL-DSQRAKALIENPLSSARSKHIDVRFHFIRALFRTRNISVEYVASAKQHADIFTKALSRANFQYH 189
            ++RFDV STS IPA+P  DLGPKR+DE GG+WPVR+A    +W+ST++                                                       DA Y D ++ RR V G+A T+GGTVVSH SKTQ +VSL ++E+E+I AGE VKEALF R VLS +APET+ +SI VL D+Q A AL++NPLSS R+KHIDVR+HFIR LFR+ +ISV++V + +QHAD+ TKALSR + QYH
Sbjct: 1373 VERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRVSLQYH 1616          
BLAST of mRNA_H-elongata_contig16373.4031.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 204 bits (520), Expect = 2.260e-57
Identity = 118/245 (48.16%), Postives = 153/245 (62.45%), Query Frame = 0
Query:    1 MKRFDVHSTSDIPASP-VDLGPKRKDEPGGDWPVRKAFRGSLWLSTWN------------------------------------------------------TDADYTDKDNSRRLVYGVAVTLGGTVVSHMSKTQRVVSLLTSESEHIPAGEAVKEALFERVVLSCIAPETNEASINVL-DSQRAKALIENPLSSARSKHIDVRFHFIRALFRTRNISVEYVASAKQHADIFTKALSRANFQYH 189
            ++RFDV STS IPA+P  DLGPKR+DE GG+WPVR+A    +W+ST++                                                       DA Y D ++ RR V G+A T+GGTVVSH SKTQ +VSL ++E+E+I AGE VKEALF R VLS +APET+ +SI VL D+Q A AL++NPLSS R+KHIDVR+HFIR LFR+ +ISV++V + +QHAD+ TKALSR + QYH
Sbjct: 1536 VERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRVSLQYH 1779          
BLAST of mRNA_H-elongata_contig16373.4031.1 vs. uniprot
Match: A0A6H5J9E9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9E9_9PHAE)

HSP 1 Score: 201 bits (512), Expect = 4.220e-57
Identity = 108/191 (56.54%), Postives = 138/191 (72.25%), Query Frame = 0
Query:    1 MKRFDVHSTSDIPASP-VDLGPKRKDEPGGDWPVRKAFRGSLWLSTWNTDADYTDKDNSRRLVYGVAVTLGGTVVSHMSKTQRVVSLLTSESEHIPAGEAVKEALFERVVLSCIAPETNEASINVL-DSQRAKALIENPLSSARSKHIDVRFHFIRALFRTRNISVEYVASAKQHADIFTKALSRANFQYH 189
            +KR DV STS IPA+P VDLGPKR DE GG+WPVR+A    +W S                 V G+A T+G TVVSH SKTQ +VSL ++ESE+I AGE +K+ALF R VLS +APET+ +SI  L D+Q A AL++NPLSS R+KHIDVRFHFIR LF + +ISV+++ + +QHAD+ TKAL+RA+ QYH
Sbjct:  456 VKRIDVQSTSRIPATPGVDLGPKRDDEKGGEWPVREAIGSMMWRS-----------------VQGLATTVGSTVVSHGSKTQSIVSLSSTESEYIAAGEGLKDALFVRAVLSFVAPETSGSSIQALEDNQGAIALVQNPLSSGRTKHIDVRFHFIRGLFMSGDISVKFIPTTEQHADLLTKALNRASLQYH 629          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16373.4031.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JCG0_9PHAE1.170e-6148.57Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KJM0_9PHAE1.180e-6152.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCA5_9PHAE2.730e-5946.80Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LGF7_9PHAE4.070e-5948.57Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQ05_9PHAE1.490e-5848.50Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KGN1_9PHAE4.370e-5848.16Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KSG8_9PHAE2.150e-5748.16Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE2.250e-5748.16Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE2.260e-5748.16Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5J9E9_9PHAE4.220e-5756.54Reverse transcriptase Ty1/copia-type domain-contai... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 49..192
NoneNo IPR availablePANTHERPTHR11439:SF275coord: 49..192

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16373contigH-elongata_contig16373:2245..2844 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16373.4031.1mRNA_H-elongata_contig16373.4031.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig16373 2206..3928 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig16373.4031.1 ID=prot_H-elongata_contig16373.4031.1|Name=mRNA_H-elongata_contig16373.4031.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=200bp
MKRFDVHSTSDIPASPVDLGPKRKDEPGGDWPVRKAFRGSLWLSTWNTDA
DYTDKDNSRRLVYGVAVTLGGTVVSHMSKTQRVVSLLTSESEHIPAGEAV
KEALFERVVLSCIAPETNEASINVLDSQRAKALIENPLSSARSKHIDVRF
HFIRALFRTRNISVEYVASAKQHADIFTKALSRANFQYHWKHWMREFKH*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR039537Retrotran_Ty1/copia-like