mRNA_H-elongata_contig16373.4031.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig16373.4031.1
Unique NamemRNA_H-elongata_contig16373.4031.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig16373.4031.1 vs. uniprot
Match: A0A6H5JCG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG0_9PHAE)

HSP 1 Score: 221 bits (564), Expect = 6.480e-62
Identity = 161/426 (37.79%), Postives = 223/426 (52.35%), Query Frame = 1
Query:  439 CEEKQDLDYPLAMAAEQQPKLSTPSHVENHLSGVESPPFSITGVERSLYMKLRGGYDENS-------RAIYALKQSERKWGHLYADTLIEMVSSNASLT-CVFSER*LTKPSL*SSVSTWTTCWL-------EGRKKTTSLSSYLLTKTNKQTT*----ASAHGTMGATLREM*NWAQSNLMKRFDVHSTSDIPASP-VDLGPKRKDEPGGDWPVRKAFRGSLWLSTWN------------------------------------------------------TDADYTDKDNSRRLVYGVAVTLGGTVVSHMSKTQRVVSLLTSESEHIPAGEAVKEALFERVVLSCIAPETNEASINVL-DSQRAKALIENPLSSARSKHIDVRFHFIRALFRTRNISVEYVASAKQHADIFTKALSRANFQYH 1491
            C     +   LA+A E+  KL       NH    ++  F+   ++  ++++L  G  E S       RAIY LKQS R+WG+  ADTL+E          CVF +    K  +           +       + ++   SL+    TK   +       A        TLR        +++ RFDV STS IPASP VD+GPKR DE GG+WPVR+A    +W+ST++                                                       DA Y D ++ RR V G+A T+GGTV+SH SKTQ +VSL ++E+E+I AGE VKEALF R VLS IAPET+ +SI VL D+Q A AL++NPLSSARSKHIDVR+HFIR LFR+ +IS+++V++++QHAD+ TKALS+++ QYH
Sbjct:   88 CPSSASIKLMLAVANEKSLKL-------NHWDVKQA--FTHAKLDEDVFLRLPAGCGEKSHKVVKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKM---KDDVVXXXXXXXXDXILVAGSDDDCKELLASLNKAFPTKDLGECVWFDGCAVERDLEAGTLRISQTAYIDSIVNRFDVQSTSSIPASPGVDIGPKRDDESGGEWPVREAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLAVYVDASYADAED-RRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGDISIKFVSTSEQHADMLTKALSKSSLQYH 500          
BLAST of mRNA_H-elongata_contig16373.4031.1 vs. uniprot
Match: A0A6H5LGF7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LGF7_9PHAE)

HSP 1 Score: 222 bits (565), Expect = 5.270e-59
Identity = 162/427 (37.94%), Postives = 225/427 (52.69%), Query Frame = 1
Query:  439 CEEKQDLDYPLAMAAEQQPKLSTPSHVENHLSGVESPPFSITGVERSLYMKLRGGYDENS-------RAIYALKQSERKWGHLYADTLIEMVSSNASLT-CVFSER*LTKPSL*SSVSTWTTCWL-------EGRKKTTSLSSYLLTKTNKQTT*ASAHGT-----MGATLREM*NWAQSNLMKRFDVHSTSDIPASP-VDLGPKRKDEPGGDWPVRKAFRGSLWLSTWN------------------------------------------------------TDADYTDKDNSRRLVYGVAVTLGGTVVSHMSKTQRVVSLLTSESEHIPAGEAVKEALFERVVLSCIAPETNEASINVL-DSQRAKALIENPLSSARSKHIDVRFHFIRALFRTRNISVEYVASAKQHADIFTKALSRANFQYH 1491
            C     +   LA+A E+  KL       NH    ++  F+   ++  ++++L  G  E S       RAIY LKQS R+WG+  ADTL+E          CVF +    K  +           +       + ++   SL+    TK   +               G TLR +   A  +++ RFDV STS IPASP VD+GPKR DE GG+WPVR+A    +W+ST++                                                       DA Y D ++ RR V G+A T+GGTV+SH SKTQ +VSL ++E+E+I AGE VKEALF R VLS IAPET+ +SI VL D+Q A AL++NPLSSARSKHIDVR+HFIR LFR+ +IS+++V++++QHAD+ TKALS+++ QYH
Sbjct: 1477 CPSSASIKLMLAVANEKSLKL-------NHWDVKQA--FTHAKLDEDVFLRLPAGCGEKSHKVVKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKM---KDDVVXXXXXXXXDXILVAGSDDDCKELLASLNKAFPTKDLGECVWFDGCAVERDLEAGMTLR-ISQTAYIDIVNRFDVQSTSSIPASPGVDIGPKRDDESGGEWPVREAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLEVYVDASYADAED-RRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGDISIKFVSTSEQHADMLTKALSKSSLQYH 1889          
BLAST of mRNA_H-elongata_contig16373.4031.1 vs. uniprot
Match: A0A6H5KQ05_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ05_9PHAE)

HSP 1 Score: 212 bits (540), Expect = 6.640e-59
Identity = 143/366 (39.07%), Postives = 199/366 (54.37%), Query Frame = 1
Query:  550 PFSITGVERSLYMKLRGGYDENS-------RAIYALKQSERKWGHLYADTLIEMVSSNASLT-CVFSER*LTKPSL*SSVSTWTTCWLEGRKKTTSLSSYLLTKTNKQTT*ASAHGTMGATLREM*NWAQSNLMKRFDVHSTSDIPASP-VDLGPKRKDEPGGDWPVRKAFRGSLWLSTWN------------------------------------------TDADYTDKDNSRRLVYGVAVTLGGTVVSHMSKTQRVVSLLTSESEHIPAGEAVKEALFERVVLSCIAPETNEASINVLD-SQRAKALIENPLSSARSKHIDVRFHFIRALFRTRNISVEYVASAKQHADIFTKALSRANFQYH 1491
            P++   ++  ++++L  G  + S       RAIY LKQS R+WG+  A TL+E          CVF +  + +  +   V       + G  +        L KTN          ++G        W    +++RFDV STS IPASP  DLGPK+ DE GG WPVR+A    +W+ST++                                           DA Y D ++ RR V G+A T+GGTV+SH S TQ +VS+ ++E+E+I AGE VKEALF R VLS + PET+ +SI VLD +Q A AL++NPL S R+KHIDVR+HFIR LFR+ +ISV++V + +QHAD+ TKALSR + QYH
Sbjct:  144 PYTHPTLDEEVFLRLPAGCGDKSHKIVKAERAIYGLKQSGRQWGYHAAGTLVESRFEQCKADPCVFRKM-VDEVVVMIIVIYLDDILVAGSDEDCEELLASLNKTNPT-------NSLGEC-----EWFDG-MVRRFDVQSTSRIPASPGADLGPKQGDEKGGQWPVREAIGSMMWVSTFSRPDVSFAVRAWDAIQKIVGYSKGTRDLGITYQRGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVISHGSNTQSIVSVSSTEAEYIAAGEGVKEALFVRAVLSFVPPETSGSSIEVLDDNQGAIALVQNPLRSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRVSLQYH 494          
BLAST of mRNA_H-elongata_contig16373.4031.1 vs. uniprot
Match: A0A6H5KJM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJM0_9PHAE)

HSP 1 Score: 201 bits (511), Expect = 7.880e-58
Identity = 117/223 (52.47%), Postives = 147/223 (65.92%), Query Frame = 1
Query:  922 LMKRFDVHSTSDIPASPV-DLGPKRKDEPGGDWPVRKAFRGSLWLSTWN---------TDADYTDKDNSRR------------------LVY----GVAVTLGGTVVSHMSKTQRVVSLLTSESEHIPAGEAVKEALFERVVLSCIAPETNEASINVL-DSQRAKALIENPLSSARSKHIDVRFHFIRALFRTRNISVEYVASAKQHADIFTKALSRANFQYH 1491
            +++ FDV STS IPASP  DLGPKR+DE GG+WPVR+A    +W+S ++         T A +      R                   + Y    GVA T+GGTVVSH SKTQ +VSL ++E+E+I  GE VK ALF R VLS IAPET+ +SI VL D+Q A AL++NPLSS R+KHIDVRFHFIR LFR+ NISV +V + +QHAD+ TKALSRA+ QYH
Sbjct:    1 MVEHFDVQSTSRIPASPGGDLGPKREDEEGGEWPVREAIGSMMWVSNFSRPDVSSAVCTVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGVATTVGGTVVSHGSKTQSIVSLSSTEAEYIATGEGVKGALFVRAVLSFIAPETSGSSIQVLEDNQGAIALVQNPLSSGRTKHIDVRFHFIRGLFRSGNISVNFVPTTEQHADVLTKALSRASLQYH 223          
BLAST of mRNA_H-elongata_contig16373.4031.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 214 bits (546), Expect = 1.350e-56
Identity = 151/387 (39.02%), Postives = 207/387 (53.49%), Query Frame = 1
Query:  553 FSITGVERSLYMKLRGGYDENS-------RAIYALKQSERKWGHLYADTLIEMVSSNASLT-CVFSER*LTKPSL*SSVSTWTTCWL------EGRKKTTSLSSYLLTKTNKQTT*----ASAHGTMGATLREM*NWAQSNLMKRFDVHSTSDIPASP-VDLGPKRKDEPGGDWPVRKAFRGSLWLSTWN------------------------------------------------------TDADYTDKDNSRRLVYGVAVTLGGTVVSHMSKTQRVVSLLTSESEHIPAGEAVKEALFERVVLSCIAPETNEASINVL-DSQRAKALIENPLSSARSKHIDVRFHFIRALFRTRNISVEYVASAKQHADIFTKALSRANFQYH 1491
            ++   ++  +++KL  G  + S       RAIY LKQS R+WG+  ADTL+E          CVF  R +    +   +  +    L      +  +   SL+    TK   +       A        TLR        ++++RFDV STS IPA+P  DLGPKR+DE GG+WPVR+A    +W+ST++                                                       DA Y D ++ RR V G+A T+GGTVVSH SKTQ +VSL ++E+E+I AGE VKEALF R VLS +APET+ +SI VL D+Q A AL++NPLSS R+KHIDVR+HFIR LFR+ +ISV++V + +QHAD+ TKALSR + QYH
Sbjct:  854 YTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVF--RKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRVSLQYH 1237          
BLAST of mRNA_H-elongata_contig16373.4031.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 214 bits (546), Expect = 1.570e-56
Identity = 151/387 (39.02%), Postives = 207/387 (53.49%), Query Frame = 1
Query:  553 FSITGVERSLYMKLRGGYDENS-------RAIYALKQSERKWGHLYADTLIEMVSSNASLT-CVFSER*LTKPSL*SSVSTWTTCWL------EGRKKTTSLSSYLLTKTNKQTT*----ASAHGTMGATLREM*NWAQSNLMKRFDVHSTSDIPASP-VDLGPKRKDEPGGDWPVRKAFRGSLWLSTWN------------------------------------------------------TDADYTDKDNSRRLVYGVAVTLGGTVVSHMSKTQRVVSLLTSESEHIPAGEAVKEALFERVVLSCIAPETNEASINVL-DSQRAKALIENPLSSARSKHIDVRFHFIRALFRTRNISVEYVASAKQHADIFTKALSRANFQYH 1491
            ++   ++  +++KL  G  + S       RAIY LKQS R+WG+  ADTL+E          CVF  R +    +   +  +    L      +  +   SL+    TK   +       A        TLR        ++++RFDV STS IPA+P  DLGPKR+DE GG+WPVR+A    +W+ST++                                                       DA Y D ++ RR V G+A T+GGTVVSH SKTQ +VSL ++E+E+I AGE VKEALF R VLS +APET+ +SI VL D+Q A AL++NPLSS R+KHIDVR+HFIR LFR+ +ISV++V + +QHAD+ TKALSR + QYH
Sbjct: 1233 YTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVF--RKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRVSLQYH 1616          
BLAST of mRNA_H-elongata_contig16373.4031.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 214 bits (546), Expect = 1.620e-56
Identity = 151/387 (39.02%), Postives = 207/387 (53.49%), Query Frame = 1
Query:  553 FSITGVERSLYMKLRGGYDENS-------RAIYALKQSERKWGHLYADTLIEMVSSNASLT-CVFSER*LTKPSL*SSVSTWTTCWL------EGRKKTTSLSSYLLTKTNKQTT*----ASAHGTMGATLREM*NWAQSNLMKRFDVHSTSDIPASP-VDLGPKRKDEPGGDWPVRKAFRGSLWLSTWN------------------------------------------------------TDADYTDKDNSRRLVYGVAVTLGGTVVSHMSKTQRVVSLLTSESEHIPAGEAVKEALFERVVLSCIAPETNEASINVL-DSQRAKALIENPLSSARSKHIDVRFHFIRALFRTRNISVEYVASAKQHADIFTKALSRANFQYH 1491
            ++   ++  +++KL  G  + S       RAIY LKQS R+WG+  ADTL+E          CVF  R +    +   +  +    L      +  +   SL+    TK   +       A        TLR        ++++RFDV STS IPA+P  DLGPKR+DE GG+WPVR+A    +W+ST++                                                       DA Y D ++ RR V G+A T+GGTVVSH SKTQ +VSL ++E+E+I AGE VKEALF R VLS +APET+ +SI VL D+Q A AL++NPLSS R+KHIDVR+HFIR LFR+ +ISV++V + +QHAD+ TKALSR + QYH
Sbjct: 1396 YTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVF--RKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRVSLQYH 1779          
BLAST of mRNA_H-elongata_contig16373.4031.1 vs. uniprot
Match: A0A6H5L060_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L060_9PHAE)

HSP 1 Score: 214 bits (544), Expect = 2.530e-56
Identity = 151/367 (41.14%), Postives = 200/367 (54.50%), Query Frame = 1
Query:  607 DENSRAIYALKQSERKWGHLYADTLIEMVSSNASLT-CVFSER*LTKPSL*SSVSTWTTCWLEGRKKT-----TSLSSYLLTKTNKQTT*----ASAHGTMGATLREM*NWAQSNLMKRFDVHSTSDIPASP-VDLGPKRKDEPGGDWPVRKAFRGSLWLSTWN------------------------------------------------------TDADYTDKDNSRRLVYGVAVTLGGTVVSHMSKTQRVVSLLTSESEHIPAGEAVKEALFERVVLSCIAPETNEASINVL-DSQRAKALIENPLSSARSKHIDVRFHFIRALFRTRNISVEYVASAKQHADIFTKALSRANFQYHWKHWMR 1509
            DE  RAIY LKQS R+WG+  ADTL+E          CVF +  + + ++   V       + G  +       SL+    TK   +       A      G TLR        +++KRFDV STS IPA+P VDL PKR+DE GG+WP R+A    +W+ST++                                                       DA Y D ++ RR V G+A T+GGTVVSH SKTQ +VSL ++E+E+I AGE VKEALF R VLS +APET+ +SI VL D+Q A AL++NPLSS R+KHIDV FHFIR LFR+ +ISV++V + +QHAD+ TKALSRA+  YH +  M+
Sbjct:  908 DEAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKM-VDEVAVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVKGGTLRISQTAYIGSMVKRFDVQSTSRIPATPGVDLVPKREDEEGGEWPRREAIGSMMWVSTFSLPDVSFAVRAVARHAHAPAKRHWDAIQKTLGYLKETRDLGIAYQRGSGLGLAMYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIQVLEDNQGAIALVQNPLSSGRTKHIDVTFHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRASLLYHRRKLMK 1272          
BLAST of mRNA_H-elongata_contig16373.4031.1 vs. uniprot
Match: A0A6H5KCA5_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCA5_9PHAE)

HSP 1 Score: 196 bits (498), Expect = 1.620e-55
Identity = 117/251 (46.61%), Postives = 151/251 (60.16%), Query Frame = 1
Query:  922 LMKRFDVHSTSDIPASP-VDLGPKRKDEPGGDWPVRKAFRGSLWLSTWN------------------------------------------------------TDADYTDKDNSRRLVYGVAVTLGGTVVSHMSKTQRVVSLLTSESEHIPAGEAVKEALFERVVLSCIAPETNEASINVL-DSQRAKALIENPL-----SSARSKHIDVRFHFIRALFRTRNISVEYVASAKQHADIFTKALSRANFQYH 1491
            +++RFDV STS IPA+P  DLGPKR+DE GG+WPVR+A    +W+ST++                                                       DA Y D ++ RR V G+A T GGTVVSH SK Q +VSL ++E+EHI AGE VKEALF R VLS +APET  +SI VL D+Q   AL++NPL     SS R+KHIDVRFHFIR LFR+ +I+V++V + +QHAD+ T+ALSRA+ QYH
Sbjct:    1 MVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTED-RRSVSGLATTGGGTVVSHGSKKQSIVSLSSTEAEHIAAGEGVKEALFMRAVLSFVAPETRGSSIQVLEDNQGGMALVQNPLVQNPLSSGRTKHIDVRFHFIRGLFRSGDITVKFVPTTEQHADLLTQALSRASLQYH 250          
BLAST of mRNA_H-elongata_contig16373.4031.1 vs. uniprot
Match: A0A6H5KGN1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGN1_9PHAE)

HSP 1 Score: 206 bits (523), Expect = 3.530e-54
Identity = 118/246 (47.97%), Postives = 154/246 (62.60%), Query Frame = 1
Query:  922 LMKRFDVHSTSDIPASP-VDLGPKRKDEPGGDWPVRKAFRGSLWLSTWN------------------------------------------------------TDADYTDKDNSRRLVYGVAVTLGGTVVSHMSKTQRVVSLLTSESEHIPAGEAVKEALFERVVLSCIAPETNEASINVL-DSQRAKALIENPLSSARSKHIDVRFHFIRALFRTRNISVEYVASAKQHADIFTKALSRANFQYH 1491
            +++RFDV STS IPA+P  DLGPKR+DE GG+WPVR+A    +W+ST++                                                       DA Y D ++ RR V G+A T+GGTVVSH SKTQ +VSL ++E+E+I AGE VKEALF R VLS +APET+ +SI VL D+Q A AL++NPLSS R+KHIDVR+HFIR LFR+ +ISV++V + +QHAD+ TKALSR + QYH
Sbjct:  601 MVERFDVQSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIQVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRVSLQYH 845          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16373.4031.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JCG0_9PHAE6.480e-6237.79Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5LGF7_9PHAE5.270e-5937.94Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQ05_9PHAE6.640e-5939.07Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KJM0_9PHAE7.880e-5852.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSG8_9PHAE1.350e-5639.02Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE1.570e-5639.02Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE1.620e-5639.02Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5L060_9PHAE2.530e-5641.14Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KCA5_9PHAE1.620e-5546.61Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KGN1_9PHAE3.530e-5447.97Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16373contigH-elongata_contig16373:2206..3928 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score105.1
Seed ortholog evalue3.8e-20
Seed eggNOG ortholog7425.NV17956-PA
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs38DPC@33154,3BGB6@33208,3D5G4@33213,3SKEY@50557,41ZUZ@6656,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-03_001760.2
Exons3
Model size1563
Cds size600
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16373.4031.1prot_H-elongata_contig16373.4031.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig16373 2245..2844 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929957.949204-UTR-H-elongata_contig16373:2205..22441622929957.949204-UTR-H-elongata_contig16373:2205..2244Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16373 2206..2244 -
1691679223.3513827-UTR-H-elongata_contig16373:2205..22441691679223.3513827-UTR-H-elongata_contig16373:2205..2244Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16373 2206..2244 -
1622929957.9949088-UTR-H-elongata_contig16373:2844..31481622929957.9949088-UTR-H-elongata_contig16373:2844..3148Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16373 2845..3148 -
1691679223.3912978-UTR-H-elongata_contig16373:2844..31481691679223.3912978-UTR-H-elongata_contig16373:2844..3148Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16373 2845..3148 -
1622929958.0099065-UTR-H-elongata_contig16373:3169..34731622929958.0099065-UTR-H-elongata_contig16373:3169..3473Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16373 3170..3473 -
1691679223.404102-UTR-H-elongata_contig16373:3169..34731691679223.404102-UTR-H-elongata_contig16373:3169..3473Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16373 3170..3473 -
1622929958.026436-UTR-H-elongata_contig16373:3612..39281622929958.026436-UTR-H-elongata_contig16373:3612..3928Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16373 3613..3928 -
1691679223.4124708-UTR-H-elongata_contig16373:3612..39281691679223.4124708-UTR-H-elongata_contig16373:3612..3928Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16373 3613..3928 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929957.9729307-CDS-H-elongata_contig16373:2244..28441622929957.9729307-CDS-H-elongata_contig16373:2244..2844Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16373 2245..2844 -
1691679223.374856-CDS-H-elongata_contig16373:2244..28441691679223.374856-CDS-H-elongata_contig16373:2244..2844Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16373 2245..2844 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig16373.4031.1

>prot_H-elongata_contig16373.4031.1 ID=prot_H-elongata_contig16373.4031.1|Name=mRNA_H-elongata_contig16373.4031.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=200bp
MKRFDVHSTSDIPASPVDLGPKRKDEPGGDWPVRKAFRGSLWLSTWNTDA
DYTDKDNSRRLVYGVAVTLGGTVVSHMSKTQRVVSLLTSESEHIPAGEAV
KEALFERVVLSCIAPETNEASINVLDSQRAKALIENPLSSARSKHIDVRF
HFIRALFRTRNISVEYVASAKQHADIFTKALSRANFQYHWKHWMREFKH*
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mRNA from alignment at H-elongata_contig16373:2206..3928-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig16373.4031.1 ID=mRNA_H-elongata_contig16373.4031.1|Name=mRNA_H-elongata_contig16373.4031.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1723bp|location=Sequence derived from alignment at H-elongata_contig16373:2206..3928- (Himanthalia elongata Himel1 dioecious)
CGGGAGGGCGAGGGCCTTCCCGCAAGCGCCTTACCAGCGTTGGAGGCACC AGGGGAGAGAAAAAAGTCGCGCGCCCTCTGTCGTACGAAGAAGCGGGCGA TGCTCGCTGCAGCCAAGCTGTGAGCCTATTGCCGTCTTCGAGGACCGTGG CAGAAAAGTGCGTGGCATGACCGCGCGTACTCCGTCGCGAAGGACTGCGG CAGACCGGAGGTGCAATACGCTCGGTGGTAGTGCCGGACACAAATCACCA CCGTTGGTGGTGACGCACGAGAAGTCGCGCGGGGATCCCGCGTGCACTCT ACCGCGACGGACCGCGGTGAAGCGGGGAGGGGAGTCTCTCCCCGTGCACA CTTCGCTCATGAAACAGGCAGAAAGAGATACGACCGTGCAGCCGAGTAAA ACACTATGTGTACCTTGCTCAGAGGAACGGTGGGGGGATGCCTGTGGGGG AGAAGCCGTGGATGAGCCGCCGTTGATGTGGTGAGATGTAGCGCGGGGGA CGTCAATTGCGGAGGAGCCGTAGATAAGCCGCGTCGTGATGTAGTGGGTC GAGGAAGATGGGCCGCCGATGGAGCGGTGCGAGGAGAAGCAGGACTTGGA CTACCCTCTCGCAATGGCGGCCGAACAACAACCCAAGCTAAGTACCCCGT CCCATGTCGAAAACCACCTTAGTGGAGTAGAGTCGCCCCCATTCTCTATA ACGGGAGTAGAACGGTCTTTGTACATGAAACTTCGTGGTGGTTACGATGA AAACTCAAGAAAGACCACTAAGTTGGAAAAGGCCATTTACGCCCTGAAGC AGAGTGAACGGAAGTGGGGTCATTTGTATGCAGATACTCTGATAGAAATG GTTTCGAGCAATGCAAGCCTGACCTGTGTATTTTCCGAAAGATAGTTGAC GAAGCCGTCGTTATGATCGTCGGTGTCTACGTGGACGACCTGCTGGTTGG AGGGTCGGAAGAAGACTACGAGTCTTAGCTCGTATCTATTAACAAAAACA AACAAACAAACGACCTAGGCGAGTGCACATGGTACGATGGGTGCGACATT GAGAGAAATGTAGAATTGGGCACAATCGAACCTAATGAAACGCTTTGACG TACATTCCACGTCCGACATCCCTGCTTCCCCCGTTGACCTAGGACCAAAA CGGAAAGATGAGCCGGGGGGGGACTGGCCCGTGAGGAAGGCTTTCAGAGG CTCGCTGTGGCTATCGACGTGGAACACAGACGCAGACTACACCGACAAGG ATAACAGTAGACGATTGGTTTATGGAGTAGCGGTGACTCTAGGAGGTACC GTCGTAAGCCACATGAGTAAAACACAGCGAGTTGTTTCGCTATTGACCTC AGAGTCAGAACACATTCCAGCTGGGGAAGCTGTCAAGGAAGCTTTGTTTG AGCGTGTCGTTTTGTCATGCATTGCGCCTGAGACGAATGAGGCAAGCATA AATGTCCTTGATAGCCAGCGGGCGAAAGCACTGATTGAGAACCCCCTGAG CTCGGCTAGGAGCAAACACATCGATGTACGGTTCCATTTTATCCGTGCCC TTTTTAGGACGCGAAATATTTCAGTGGAGTACGTAGCGTCGGCGAAACAG CACGCCGACATTTTTACCAAGGCCCTTAGTAGGGCCAATTTCCAATACCA CTGGAAGCACTGGATGAGAGAGTTCAAGCACTAAGTGCACTAGCAACGTC ACCCAAGGCAGGTAGGCCTAGGA
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Coding sequence (CDS) from alignment at H-elongata_contig16373:2206..3928-

>mRNA_H-elongata_contig16373.4031.1 ID=mRNA_H-elongata_contig16373.4031.1|Name=mRNA_H-elongata_contig16373.4031.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1200bp|location=Sequence derived from alignment at H-elongata_contig16373:2206..3928- (Himanthalia elongata Himel1 dioecious)
ATGAAACGCTTTGACGTACATTCCACGTCCGACATCCCTGCTTCCCCCGT
TGACCTAGGACCAAAACGGAAAGATGAGCCGGGGGGGGACTGGCCCGTGA
GGAAGGCTTTCAGAGGCTCGCTGTGGCTATCGACGTGGAACACAGACGCA
GACTACACCGACAAGGATAACAGTAGACGATTGGTTTATGGAGTAGCGGT
GACTCTAGGAGGTACCGTCGTAAGCCACATGAGTAAAACACAGCGAGTTG
TTTCGCTATTGACCTCAGAGTCAGAACACATTCCAGCTGGGGAAGCTGTC
AAGGAAGCTTTGTTTGAGCGTGTCGTTTTGTCATGCATTGCGCCTGAGAC
GAATGAGGCAAGCATAAATGTCCTTGATAGCCAGCGGGCGAAAGCACTGA
TTGAGAACCCCCTGAGCTCGGCTAGGAGCAAACACATCGATGTACGGTTC
CATTTTATCCGTGCCCTTTTTAGGACGCGAAATATTTCAGTGGAGTACGT
AGCGTCGGCGAAACAGCACGCCGACATTTTTACCAAGGCCCTTAGTAGGG
CCAATTTCCAATACCACTGGAAGCACTGGATGAGAGAGTTCAAGCACTAA
ATGAAACGCTTTGACGTACATTCCACGTCCGACATCCCTGCTTCCCCCGT
TGACCTAGGACCAAAACGGAAAGATGAGCCGGGGGGGGACTGGCCCGTGA
GGAAGGCTTTCAGAGGCTCGCTGTGGCTATCGACGTGGAACACAGACGCA
GACTACACCGACAAGGATAACAGTAGACGATTGGTTTATGGAGTAGCGGT
GACTCTAGGAGGTACCGTCGTAAGCCACATGAGTAAAACACAGCGAGTTG
TTTCGCTATTGACCTCAGAGTCAGAACACATTCCAGCTGGGGAAGCTGTC
AAGGAAGCTTTGTTTGAGCGTGTCGTTTTGTCATGCATTGCGCCTGAGAC
GAATGAGGCAAGCATAAATGTCCTTGATAGCCAGCGGGCGAAAGCACTGA
TTGAGAACCCCCTGAGCTCGGCTAGGAGCAAACACATCGATGTACGGTTC
CATTTTATCCGTGCCCTTTTTAGGACGCGAAATATTTCAGTGGAGTACGT
AGCGTCGGCGAAACAGCACGCCGACATTTTTACCAAGGCCCTTAGTAGGG
CCAATTTCCAATACCACTGGAAGCACTGGATGAGAGAGTTCAAGCACTAA
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