mRNA_H-elongata_contig163706.4030.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig163706.4030.1
Unique NamemRNA_H-elongata_contig163706.4030.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig163706.4030.1 vs. uniprot
Match: D8LNX6_ECTSI (NADH dehydrogenase (Ubiquinone) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNX6_ECTSI)

HSP 1 Score: 115 bits (289), Expect = 1.310e-28
Identity = 56/66 (84.85%), Postives = 61/66 (92.42%), Query Frame = 1
Query:    1 KVIDVDKFEVIYISPRNYFVFTPMLAAASVGTVDVRSITEPIRMANPCVKYVAGEAIDINAAEQKV 198
            KVID DK+EVIY+SPRNYFVFTPMLAAASVGTVDVRSITEPIRMANPCVKYV+GE IDI   ++KV
Sbjct:  143 KVIDSDKYEVIYVSPRNYFVFTPMLAAASVGTVDVRSITEPIRMANPCVKYVSGEVIDIKPGDKKV 208          
BLAST of mRNA_H-elongata_contig163706.4030.1 vs. uniprot
Match: A0A0G4FSU6_VITBC (Pyr_redox_2 domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4FSU6_VITBC)

HSP 1 Score: 91.7 bits (226), Expect = 4.770e-20
Identity = 41/66 (62.12%), Postives = 55/66 (83.33%), Query Frame = 1
Query:    1 KVIDVDKFEVIYISPRNYFVFTPMLAAASVGTVDVRSITEPIRMANPCVKYVAGEAIDINAAEQKV 198
            K+ID DKF+V+ +SPRNYF+FTPMLAA++VGTV+ RSITEP+R ANP   Y  GEAIDI+  ++++
Sbjct:  217 KIIDTDKFDVVIVSPRNYFLFTPMLAASAVGTVEYRSITEPMRKANPLTSYYEGEAIDIDPEKKEI 282          
BLAST of mRNA_H-elongata_contig163706.4030.1 vs. uniprot
Match: A0A7S1TMH7_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Erythrolobus australicus TaxID=1077150 RepID=A0A7S1TMH7_9RHOD)

HSP 1 Score: 87.0 bits (214), Expect = 4.190e-19
Identity = 38/66 (57.58%), Postives = 55/66 (83.33%), Query Frame = 1
Query:    1 KVIDVDKFEVIYISPRNYFVFTPMLAAASVGTVDVRSITEPIRMANPCVKYVAGEAIDINAAEQKV 198
            K+ID +KF+++ +SPRNYFVFTPMLA+++VGTV++RS+ EPIR  N  + Y  G+ I+INAAE+K+
Sbjct:   42 KMIDTEKFDLVVVSPRNYFVFTPMLASSAVGTVELRSVCEPIRQCNEFMDYYEGKCIEINAAEKKI 107          
BLAST of mRNA_H-elongata_contig163706.4030.1 vs. uniprot
Match: A0A0G4IC18_9ALVE (Pyr_redox_2 domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4IC18_9ALVE)

HSP 1 Score: 87.4 bits (215), Expect = 1.430e-18
Identity = 41/66 (62.12%), Postives = 52/66 (78.79%), Query Frame = 1
Query:    1 KVIDVDKFEVIYISPRNYFVFTPMLAAASVGTVDVRSITEPIRMANPCVKYVAGEAIDINAAEQKV 198
            KVID  K++V+ +SPRNYFVFTPML A+SVGTV+ RSITEPIR ANP V Y  GE +++   +QK+
Sbjct:   88 KVIDALKYDVVVVSPRNYFVFTPMLTASSVGTVEYRSITEPIRKANPLVDYYEGEVVEVAPDQQKL 153          
BLAST of mRNA_H-elongata_contig163706.4030.1 vs. uniprot
Match: A0A7S0TQ33_HEMAN (Hypothetical protein (Fragment) n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0TQ33_HEMAN)

HSP 1 Score: 85.9 bits (211), Expect = 3.910e-18
Identity = 39/66 (59.09%), Postives = 53/66 (80.30%), Query Frame = 1
Query:    1 KVIDVDKFEVIYISPRNYFVFTPMLAAASVGTVDVRSITEPIRMANPCVKYVAGEAIDINAAEQKV 198
            K+ID DKF+V+ ISPR YF+FTPMLAA+SVGTV+ RSI+EP+R +NP V Y+  EA  ++ A +K+
Sbjct:  159 KIIDTDKFDVVAISPRPYFIFTPMLAASSVGTVEYRSISEPMRASNPFVDYIQAEATGVDTAAKKI 224          
BLAST of mRNA_H-elongata_contig163706.4030.1 vs. uniprot
Match: A0A0G4EDA2_VITBC (Pyr_redox_2 domain-containing protein n=2 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EDA2_VITBC)

HSP 1 Score: 84.3 bits (207), Expect = 1.770e-17
Identity = 41/59 (69.49%), Postives = 47/59 (79.66%), Query Frame = 1
Query:    1 KVIDVDKFEVIYISPRNYFVFTPMLAAASVGTVDVRSITEPIRMANPCVKYVAGEAIDI 177
            K ID  KF+V+ ISPRNYF+FTP+LAAASVGTV+ RSITEP+R ANP   Y  GEA DI
Sbjct:  153 KSIDTHKFDVVIISPRNYFLFTPLLAAASVGTVEYRSITEPMRKANPYASYFEGEATDI 211          
BLAST of mRNA_H-elongata_contig163706.4030.1 vs. uniprot
Match: A0A7S2WDK4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WDK4_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 1.370e-16
Identity = 34/64 (53.12%), Postives = 48/64 (75.00%), Query Frame = 1
Query:    7 IDVDKFEVIYISPRNYFVFTPMLAAASVGTVDVRSITEPIRMANPCVKYVAGEAIDINAAEQKV 198
            ++ DK+E + +SPRN+F+FTPMLA ASVGTV+ RSIT+PIR ANP V Y+     D+N   +++
Sbjct:  101 LNADKYEAVIVSPRNFFLFTPMLAGASVGTVEYRSITQPIREANPAVDYLEATCTDVNPEAKRI 164          
BLAST of mRNA_H-elongata_contig163706.4030.1 vs. uniprot
Match: A0A813IME1_POLGL (Hypothetical protein n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813IME1_POLGL)

HSP 1 Score: 81.3 bits (199), Expect = 2.150e-16
Identity = 43/68 (63.24%), Postives = 50/68 (73.53%), Query Frame = 1
Query:    1 KVIDVDKFEVIYISPRNYFVFTPMLAAASVGTVDVRSITEPIRMANPCVKYVAG--EAIDINAAEQKV 198
            KVID    EV+ +SPRNYF+FTPMLAAASVGTV+ RSI E IR ANPCV +V G  E +D  A E +V
Sbjct:  168 KVIDQGSCEVMIVSPRNYFIFTPMLAAASVGTVEYRSIVEHIRTANPCVSFVQGTCEEVDAEAHEIRV 235          
BLAST of mRNA_H-elongata_contig163706.4030.1 vs. uniprot
Match: A0A813EKG3_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813EKG3_POLGL)

HSP 1 Score: 81.3 bits (199), Expect = 2.180e-16
Identity = 43/68 (63.24%), Postives = 50/68 (73.53%), Query Frame = 1
Query:    1 KVIDVDKFEVIYISPRNYFVFTPMLAAASVGTVDVRSITEPIRMANPCVKYVAG--EAIDINAAEQKV 198
            KVID    EV+ +SPRNYF+FTPMLAAASVGTV+ RSI E IR ANPCV +V G  E +D  A E +V
Sbjct: 1355 KVIDQGSCEVMIVSPRNYFIFTPMLAAASVGTVEYRSIVEHIRTANPCVSFVQGTCEEVDAEAHEIRV 1422          
BLAST of mRNA_H-elongata_contig163706.4030.1 vs. uniprot
Match: B8LBH6_THAPS (Predicted protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8LBH6_THAPS)

HSP 1 Score: 80.5 bits (197), Expect = 3.620e-16
Identity = 41/66 (62.12%), Postives = 48/66 (72.73%), Query Frame = 1
Query:    1 KVIDVDKFEVIYISPRNYFVFTPMLAAASVGTVDVRSITEPIRMANPCVKYVAGEAIDINAAEQKV 198
            K ID DK++V  ISPRNYFVFTPMLA ASVGTVD +SITEPIR  N  V+Y+   A +IN   Q +
Sbjct:   36 KNIDTDKYDVTVISPRNYFVFTPMLAGASVGTVDFKSITEPIREINNKVRYLEAAANEINPLTQSI 101          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig163706.4030.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNX6_ECTSI1.310e-2884.85NADH dehydrogenase (Ubiquinone) n=1 Tax=Ectocarpus... [more]
A0A0G4FSU6_VITBC4.770e-2062.12Pyr_redox_2 domain-containing protein n=1 Tax=Vitr... [more]
A0A7S1TMH7_9RHOD4.190e-1957.58Hypothetical protein (Fragment) n=1 Tax=Erythrolob... [more]
A0A0G4IC18_9ALVE1.430e-1862.12Pyr_redox_2 domain-containing protein n=1 Tax=Chro... [more]
A0A7S0TQ33_HEMAN3.910e-1859.09Hypothetical protein (Fragment) n=2 Tax=Hemiselmis... [more]
A0A0G4EDA2_VITBC1.770e-1769.49Pyr_redox_2 domain-containing protein n=2 Tax=Vitr... [more]
A0A7S2WDK4_9STRA1.370e-1653.13Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A813IME1_POLGL2.150e-1663.24Hypothetical protein n=2 Tax=Polarella glacialis T... [more]
A0A813EKG3_POLGL2.180e-1663.24Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
B8LBH6_THAPS3.620e-1662.12Predicted protein n=1 Tax=Thalassiosira pseudonana... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig163706contigH-elongata_contig163706:110..310 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score116.7
Seed ortholog evalue4.2e-24
Seed eggNOG ortholog2880.D8LNX6
KEGG koko:K03885,ko:K17871
KEGG Pathwayko00190,map00190
EggNOG free text desc.Oxidoreductase
EggNOG OGsCOG1252@1,KOG2495@2759
EC1.6.5.9,1.6.99.3
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionNADH dehydrogenase (ubiquinone)
Ec32 orthologEc-08_005450.1
Exons1
Model size201
Cds size201
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929957.8993104-CDS-H-elongata_contig163706:109..3101622929957.8993104-CDS-H-elongata_contig163706:109..310Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig163706 110..310 -
1691679223.3278515-CDS-H-elongata_contig163706:109..3101691679223.3278515-CDS-H-elongata_contig163706:109..310Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig163706 110..310 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig163706.4030.1prot_H-elongata_contig163706.4030.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig163706 110..310 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig163706.4030.1

>prot_H-elongata_contig163706.4030.1 ID=prot_H-elongata_contig163706.4030.1|Name=mRNA_H-elongata_contig163706.4030.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=67bp
KVIDVDKFEVIYISPRNYFVFTPMLAAASVGTVDVRSITEPIRMANPCVK
YVAGEAIDINAAEQKV*
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mRNA from alignment at H-elongata_contig163706:110..310-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig163706.4030.1 ID=mRNA_H-elongata_contig163706.4030.1|Name=mRNA_H-elongata_contig163706.4030.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=201bp|location=Sequence derived from alignment at H-elongata_contig163706:110..310- (Himanthalia elongata Himel1 dioecious)
AAGGTAATCGATGTCGATAAGTTCGAGGTGATCTACATATCCCCGAGGAA CTACTTCGTGTTCACCCCGATGTTAGCGGCGGCTAGCGTGGGAACGGTCG ACGTTCGAAGCATCACGGAGCCTATCCGCATGGCTAACCCTTGCGTCAAA TACGTGGCAGGAGAGGCGATCGATATCAACGCCGCTGAGCAAAAGGTATG A
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Coding sequence (CDS) from alignment at H-elongata_contig163706:110..310-

>mRNA_H-elongata_contig163706.4030.1 ID=mRNA_H-elongata_contig163706.4030.1|Name=mRNA_H-elongata_contig163706.4030.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=402bp|location=Sequence derived from alignment at H-elongata_contig163706:110..310- (Himanthalia elongata Himel1 dioecious)
AAGGTAATCGATGTCGATAAGTTCGAGGTGATCTACATATCCCCGAGGAA
CTACTTCGTGTTCACCCCGATGTTAGCGGCGGCTAGCGTGGGAACGGTCG
ACGTTCGAAGCATCACGGAGCCTATCCGCATGGCTAACCCTTGCGTCAAA
TACGTGGCAGGAGAGGCGATCGATATCAACGCCGCTGAGCAAAAGGTATG
AAAGGTAATCGATGTCGATAAGTTCGAGGTGATCTACATATCCCCGAGGA
ACTACTTCGTGTTCACCCCGATGTTAGCGGCGGCTAGCGTGGGAACGGTC
GACGTTCGAAGCATCACGGAGCCTATCCGCATGGCTAACCCTTGCGTCAA
ATACGTGGCAGGAGAGGCGATCGATATCAACGCCGCTGAGCAAAAGGTAT
GA
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