mRNA_H-elongata_contig163598.4024.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig163598.4024.1
Unique NamemRNA_H-elongata_contig163598.4024.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig163598.4024.1 vs. uniprot
Match: D7G1X2_ECTSI (Hypothetical inner membrane leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1X2_ECTSI)

HSP 1 Score: 103 bits (256), Expect = 1.620e-24
Identity = 47/59 (79.66%), Postives = 53/59 (89.83%), Query Frame = 1
Query:    1 FRKVLNAGTHGLGFVLAIIGAIILMTEASRPGKSAEHFWGCSIFSVSLMFLYLASTLFH 177
            F +VLNAGTHG+GFV AIIGA +LMTEAS+ GKS EHFWGC+IFS SLMFLYLASTL+H
Sbjct:  243 FEEVLNAGTHGVGFVAAIIGAFLLMTEASQEGKSPEHFWGCAIFSASLMFLYLASTLYH 301          
BLAST of mRNA_H-elongata_contig163598.4024.1 vs. uniprot
Match: A0A835ZJF6_9STRA (Inner membrane leucine rich repeat protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJF6_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 3.180e-16
Identity = 35/59 (59.32%), Postives = 47/59 (79.66%), Query Frame = 1
Query:    1 FRKVLNAGTHGLGFVLAIIGAIILMTEASRPGKSAEHFWGCSIFSVSLMFLYLASTLFH 177
            F +VLN+ +H LGF+++IIG I+LM+EAS P +S   FW C++FS SLM LYL+STLFH
Sbjct:  218 FEEVLNSLSHALGFIMSIIGTILLMSEASGPERSPVQFWACAVFSTSLMILYLSSTLFH 276          
BLAST of mRNA_H-elongata_contig163598.4024.1 vs. uniprot
Match: K8YVT8_NANGC (Hemolysin iii n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YVT8_NANGC)

HSP 1 Score: 76.6 bits (187), Expect = 7.910e-15
Identity = 29/59 (49.15%), Postives = 47/59 (79.66%), Query Frame = 1
Query:    1 FRKVLNAGTHGLGFVLAIIGAIILMTEASRPGKSAEHFWGCSIFSVSLMFLYLASTLFH 177
            F ++LN+ THGLGF+ +++G ++LM+ AS PG +  H+W C +FS+SLM LY++S+L+H
Sbjct:  300 FEEILNSLTHGLGFIASVVGTLLLMSAASAPGTTPYHWWSCLLFSLSLMMLYISSSLYH 358          
BLAST of mRNA_H-elongata_contig163598.4024.1 vs. uniprot
Match: A0A7S2UA44_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UA44_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 4.000e-10
Identity = 24/59 (40.68%), Postives = 41/59 (69.49%), Query Frame = 1
Query:    1 FRKVLNAGTHGLGFVLAIIGAIILMTEASRPGKSAEHFWGCSIFSVSLMFLYLASTLFH 177
            F++V+N  THG+G +L ++G   L        +S+EH W C+++S+SL+ LY++STL+H
Sbjct:   29 FQEVMNCLTHGMGILLCVLGGTALSNRVRD--RSSEHVWSCAVYSISLLCLYVSSTLYH 85          
BLAST of mRNA_H-elongata_contig163598.4024.1 vs. uniprot
Match: A0A192H3Y8_9LACO (Hemolysin III n=3 Tax=Loigolactobacillus TaxID=2767889 RepID=A0A192H3Y8_9LACO)

HSP 1 Score: 62.0 bits (149), Expect = 4.470e-10
Identity = 28/63 (44.44%), Postives = 45/63 (71.43%), Query Frame = 1
Query:    4 RKVLNAGTHGLGFVLAIIGAIILMTEASRPGKSAEHFWGCSIFSVSLMFLYLASTLFHRRVFN 192
             +VLNA THG+GFVL+++G I L+ +A+  G++  +    +I+ ++LM LYL+STLFH  +F 
Sbjct:   18 NEVLNAVTHGIGFVLSVVGLIFLLIKANTIGQTVAY----TIYGITLMILYLSSTLFHSLIFT 76          
BLAST of mRNA_H-elongata_contig163598.4024.1 vs. uniprot
Match: A0A1I1HD34_9LACO (Hemolysin III n=1 Tax=Fructobacillus durionis TaxID=283737 RepID=A0A1I1HD34_9LACO)

HSP 1 Score: 57.8 bits (138), Expect = 1.720e-8
Identity = 29/62 (46.77%), Postives = 38/62 (61.29%), Query Frame = 1
Query:    7 KVLNAGTHGLGFVLAIIGAIILMTEASRPGKSAEHFWGCSIFSVSLMFLYLASTLFHRRVFN 192
            +VLNA THGLGF+LAII +I L+ + S+   SA       ++  S+    LASTLFH  VF 
Sbjct:   13 EVLNASTHGLGFILAIIASICLLVKVSKESPSAIELAAVIVYVSSISLFLLASTLFHSLVFT 74          
BLAST of mRNA_H-elongata_contig163598.4024.1 vs. uniprot
Match: UPI001BD25DEF (hemolysin III family protein n=1 Tax=Fructobacillus TaxID=559173 RepID=UPI001BD25DEF)

HSP 1 Score: 56.6 bits (135), Expect = 4.660e-8
Identity = 29/62 (46.77%), Postives = 38/62 (61.29%), Query Frame = 1
Query:    7 KVLNAGTHGLGFVLAIIGAIILMTEASRPGKSAEHFWGCSIFSVSLMFLYLASTLFHRRVFN 192
            +VLNA THGLGFVLA+I A  L+ + S+   +       SI+ +S+    LASTLFH  VF 
Sbjct:   13 EVLNAATHGLGFVLALIAACFLIVKLSKHDMTPIEIGAISIYLLSISLFLLASTLFHALVFT 74          
BLAST of mRNA_H-elongata_contig163598.4024.1 vs. uniprot
Match: A0A3R9YXJ7_9ENTE (Hemolysin III n=1 Tax=Vagococcus humatus TaxID=1889241 RepID=A0A3R9YXJ7_9ENTE)

HSP 1 Score: 55.8 bits (133), Expect = 9.130e-8
Identity = 29/64 (45.31%), Postives = 43/64 (67.19%), Query Frame = 1
Query:    1 FRKVLNAGTHGLGFVLAIIGAIILMTEASRPGKSAEHFWGCSIFSVSLMFLYLASTLFHRRVFN 192
            + + LNA THGLG  L+I G I+L+ +AS+   S +H +   I+ VSL+ L+L+STLFH  +F 
Sbjct:   13 WNETLNAVTHGLGTGLSITGLILLLIKASQLA-SIKHLFAYLIYGVSLIILFLSSTLFHSLIFT 75          
BLAST of mRNA_H-elongata_contig163598.4024.1 vs. uniprot
Match: UPI0003797819 (hemolysin III family protein n=1 Tax=Geopsychrobacter electrodiphilus TaxID=225196 RepID=UPI0003797819)

HSP 1 Score: 55.8 bits (133), Expect = 9.750e-8
Identity = 26/58 (44.83%), Postives = 39/58 (67.24%), Query Frame = 1
Query:    4 RKVLNAGTHGLGFVLAIIGAIILMTEASRPGKSAEHFWGCSIFSVSLMFLYLASTLFH 177
             ++ N+ THG+G +LAIIG ++++  + R G    H   CSIF V+L+F Y ASTL+H
Sbjct:   14 EEIANSVTHGIGILLAIIGLVVMLYFSERYGNR-WHLVSCSIFGVTLVFSYTASTLYH 70          
BLAST of mRNA_H-elongata_contig163598.4024.1 vs. uniprot
Match: S0RXP7_ENTAV (Hemolysin III family channel protein n=26 Tax=Enterococcaceae TaxID=81852 RepID=S0RXP7_ENTAV)

HSP 1 Score: 55.5 bits (132), Expect = 1.240e-7
Identity = 28/63 (44.44%), Postives = 41/63 (65.08%), Query Frame = 1
Query:    4 RKVLNAGTHGLGFVLAIIGAIILMTEASRPGKSAEHFWGCSIFSVSLMFLYLASTLFHRRVFN 192
             +VLNA THG+G VL+I+G + L+ +A     S  H+    I+ VSL+ L+LASTL+H  +F 
Sbjct:   13 NEVLNAVTHGIGVVLSIVGFVFLLKKAD----SGLHYVSFIIYGVSLLLLFLASTLYHSLIFT 71          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig163598.4024.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1X2_ECTSI1.620e-2479.66Hypothetical inner membrane leucine rich repeat pr... [more]
A0A835ZJF6_9STRA3.180e-1659.32Inner membrane leucine rich repeat protein n=1 Tax... [more]
K8YVT8_NANGC7.910e-1549.15Hemolysin iii n=3 Tax=Monodopsidaceae TaxID=425072... [more]
A0A7S2UA44_9STRA4.000e-1040.68Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A192H3Y8_9LACO4.470e-1044.44Hemolysin III n=3 Tax=Loigolactobacillus TaxID=276... [more]
A0A1I1HD34_9LACO1.720e-846.77Hemolysin III n=1 Tax=Fructobacillus durionis TaxI... [more]
UPI001BD25DEF4.660e-846.77hemolysin III family protein n=1 Tax=Fructobacillu... [more]
A0A3R9YXJ7_9ENTE9.130e-845.31Hemolysin III n=1 Tax=Vagococcus humatus TaxID=188... [more]
UPI00037978199.750e-844.83hemolysin III family protein n=1 Tax=Geopsychrobac... [more]
S0RXP7_ENTAV1.240e-744.44Hemolysin III family channel protein n=26 Tax=Ente... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig163598contigH-elongata_contig163598:330..521 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.4
Seed ortholog evalue7.8e-20
Seed eggNOG ortholog2880.D7G1X2
EggNOG free text desc.Haemolysin-III related
EggNOG OGs2D5AR@1,2SXY1@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons1
Model size192
Cds size192
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929957.3391001-CDS-H-elongata_contig163598:329..5211622929957.3391001-CDS-H-elongata_contig163598:329..521Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig163598 330..521 -
1691679223.108074-CDS-H-elongata_contig163598:329..5211691679223.108074-CDS-H-elongata_contig163598:329..521Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig163598 330..521 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig163598.4024.1prot_H-elongata_contig163598.4024.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig163598 330..521 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig163598.4024.1

>prot_H-elongata_contig163598.4024.1 ID=prot_H-elongata_contig163598.4024.1|Name=mRNA_H-elongata_contig163598.4024.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=64bp
FRKVLNAGTHGLGFVLAIIGAIILMTEASRPGKSAEHFWGCSIFSVSLMF
LYLASTLFHRRVFN
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mRNA from alignment at H-elongata_contig163598:330..521-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig163598.4024.1 ID=mRNA_H-elongata_contig163598.4024.1|Name=mRNA_H-elongata_contig163598.4024.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=192bp|location=Sequence derived from alignment at H-elongata_contig163598:330..521- (Himanthalia elongata Himel1 dioecious)
TTCCGCAAGGTGTTGAACGCCGGTACGCACGGACTGGGCTTTGTGCTGGC GATCATCGGGGCGATTATTCTCATGACGGAGGCGTCTCGCCCGGGCAAGA GCGCGGAGCACTTCTGGGGCTGCAGTATATTCTCCGTCAGCCTTATGTTC CTCTACCTTGCGTCCACCCTCTTCCACAGGCGGGTATTCAAT
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Coding sequence (CDS) from alignment at H-elongata_contig163598:330..521-

>mRNA_H-elongata_contig163598.4024.1 ID=mRNA_H-elongata_contig163598.4024.1|Name=mRNA_H-elongata_contig163598.4024.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=384bp|location=Sequence derived from alignment at H-elongata_contig163598:330..521- (Himanthalia elongata Himel1 dioecious)
TTCCGCAAGGTGTTGAACGCCGGTACGCACGGACTGGGCTTTGTGCTGGC
GATCATCGGGGCGATTATTCTCATGACGGAGGCGTCTCGCCCGGGCAAGA
GCGCGGAGCACTTCTGGGGCTGCAGTATATTCTCCGTCAGCCTTATGTTC
CTCTACCTTGCGTCCACCCTCTTCCACAGGCGGGTATTCAATTTCCGCAA
GGTGTTGAACGCCGGTACGCACGGACTGGGCTTTGTGCTGGCGATCATCG
GGGCGATTATTCTCATGACGGAGGCGTCTCGCCCGGGCAAGAGCGCGGAG
CACTTCTGGGGCTGCAGTATATTCTCCGTCAGCCTTATGTTCCTCTACCT
TGCGTCCACCCTCTTCCACAGGCGGGTATTCAAT
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