mRNA_H-elongata_contig163576.4023.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig163576.4023.1
Unique NamemRNA_H-elongata_contig163576.4023.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig163576.4023.1 vs. uniprot
Match: D7FKC6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKC6_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 9.410e-24
Identity = 46/62 (74.19%), Postives = 54/62 (87.10%), Query Frame = 1 
Query:    1 RFGVVKTECRRAAMIPEQAGNGLFGHLVATLLASVTFAPKGMVDGDGPEEVLARADHLLEVG 186
            RFG+VK ECRRAA++PEQAGNG+ GHLVA+ LA +TFAPKGMV+GD  E VLARAD+LLE G
Sbjct:  491 RFGIVKAECRRAALVPEQAGNGMMGHLVASALAKITFAPKGMVEGDEAEGVLARADYLLEAG 552
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BLAST of mRNA_H-elongata_contig163576.4023.1 vs. uniprot
Match: A0A6H5L3V0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3V0_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 1.340e-23
Identity = 45/61 (73.77%), Postives = 53/61 (86.89%), Query Frame = 1 
Query:    4 FGVVKTECRRAAMIPEQAGNGLFGHLVATLLASVTFAPKGMVDGDGPEEVLARADHLLEVG 186
            FG+VK ECRRAA++P+QAGNG+ GHLVA+ LA +TFAPKGMV+GD  E VLARADHLLE G
Sbjct:  731 FGIVKAECRRAALVPQQAGNGMMGHLVASALAKITFAPKGMVEGDEAEAVLARADHLLEAG 791
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BLAST of mRNA_H-elongata_contig163576.4023.1 vs. uniprot
Match: W7TLX9_9STRA (Mitochondrial inner membrane protein Mitofilin n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TLX9_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 1.050e-8
Identity = 29/62 (46.77%), Postives = 42/62 (67.74%), Query Frame = 1 
Query:    1 RFGVVKTECRRAAMIPEQAGNGLFGHLVATLLASVTFAPKGMVDGDGPEEVLARADHLLEVG 186
            RF +V+   R AA +PE +  G+ GH+ A LLA+VT  P+G+V+G G +E LARA + +E G
Sbjct:  371 RFPMVQKAAREAAFVPESSP-GMVGHMFAGLLAAVTIQPRGLVEGSGADETLARAAYHVERG 431
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BLAST of mRNA_H-elongata_contig163576.4023.1 vs. uniprot
Match: K8ZAZ5_NANGC (Mitochondrion protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=K8ZAZ5_NANGC)

HSP 1 Score: 59.3 bits (142), Expect = 1.060e-8
Identity = 29/62 (46.77%), Postives = 42/62 (67.74%), Query Frame = 1 
Query:    1 RFGVVKTECRRAAMIPEQAGNGLFGHLVATLLASVTFAPKGMVDGDGPEEVLARADHLLEVG 186
            RF +V+   R AA +PE +  G+ GH+ A LLA+VT  P+G+V+G G +E LARA + +E G
Sbjct:  574 RFPMVQKAAREAAFVPESSP-GMVGHMFAGLLAAVTIQPRGLVEGSGADETLARAAYHVERG 634
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BLAST of mRNA_H-elongata_contig163576.4023.1 vs. uniprot
Match: A0A835YW45_9STRA (Mitochondrial inner membrane protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW45_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 1.590e-6
Identity = 27/62 (43.55%), Postives = 37/62 (59.68%), Query Frame = 1 
Query:    1 RFGVVKTECRRAAMIPEQAGNGLFGHLVATLLASVTFAPKGMVDGDGPEEVLARADHLLEVG 186
            RF  V+ E  RAA++P   G G+ G  V  LL+  T    GMV+G   ++VLARA+ LL+ G
Sbjct:  554 RFARVRGEAARAALVPGGDGAGVMGQAVGALLSVFTLPRHGMVEGSSADDVLARAECLLDGG 615
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig163576.4023.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FKC6_ECTSI9.410e-2474.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L3V0_9PHAE1.340e-2373.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
W7TLX9_9STRA1.050e-846.77Mitochondrial inner membrane protein Mitofilin n=1... [more]
K8ZAZ5_NANGC1.060e-846.77Mitochondrion protein n=2 Tax=Monodopsidaceae TaxI... [more]
A0A835YW45_9STRA1.590e-643.55Mitochondrial inner membrane protein-domain-contai... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig163576contigH-elongata_contig163576:689..883 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score104.8
Seed ortholog evalue1.6e-20
Seed eggNOG ortholog2880.D7FKC6
Preferred nameMIC60
KEGG koko:K17785
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005886,GO:0006605,GO:0006626,GO:0006810,GO:0006839,GO:0006886,GO:0006996,GO:0007005,GO:0007006,GO:0007007,GO:0008104,GO:0008150,GO:0009987,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0017038,GO:0019866,GO:0030061,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031304,GO:0031305,GO:0031966,GO:0031967,GO:0031975,GO:0032592,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0042407,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044284,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044743,GO:0045041,GO:0045184,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0061024,GO:0061617,GO:0065002,GO:0070585,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0071944,GO:0072594,GO:0072655,GO:0098573,GO:0098796,GO:0098798,GO:0098800,GO:1990542
EggNOG free text desc.cristae formation
EggNOG OGsKOG1854@1,KOG1854@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029
Hectar predicted targeting categoryother localisation
Exons1
Model size195
Cds size195
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929957.2978568-CDS-H-elongata_contig163576:688..8831622929957.2978568-CDS-H-elongata_contig163576:688..883Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig163576 689..883 +
1691679223.0952694-CDS-H-elongata_contig163576:688..8831691679223.0952694-CDS-H-elongata_contig163576:688..883Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig163576 689..883 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig163576.4023.1prot_H-elongata_contig163576.4023.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig163576 689..883 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig163576.4023.1

>prot_H-elongata_contig163576.4023.1 ID=prot_H-elongata_contig163576.4023.1|Name=mRNA_H-elongata_contig163576.4023.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=65bp
RFGVVKTECRRAAMIPEQAGNGLFGHLVATLLASVTFAPKGMVDGDGPEE
VLARADHLLEVGVS*
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mRNA from alignment at H-elongata_contig163576:689..883+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig163576.4023.1 ID=mRNA_H-elongata_contig163576.4023.1|Name=mRNA_H-elongata_contig163576.4023.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=195bp|location=Sequence derived from alignment at H-elongata_contig163576:689..883+ (Himanthalia elongata Himel1 dioecious)
AGGTTTGGAGTGGTGAAGACGGAGTGCAGACGCGCGGCGATGATCCCAGA
GCAAGCCGGAAACGGACTGTTTGGGCACCTGGTGGCGACGTTGCTCGCAT
CGGTGACCTTCGCCCCCAAGGGAATGGTCGACGGCGACGGCCCCGAGGAA
GTTCTGGCGAGAGCCGACCACCTGCTTGAGGTGGGTGTATCCTAA
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Coding sequence (CDS) from alignment at H-elongata_contig163576:689..883+

>mRNA_H-elongata_contig163576.4023.1 ID=mRNA_H-elongata_contig163576.4023.1|Name=mRNA_H-elongata_contig163576.4023.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=390bp|location=Sequence derived from alignment at H-elongata_contig163576:689..883+ (Himanthalia elongata Himel1 dioecious)
AGGTTTGGAGTGGTGAAGACGGAGTGCAGACGCGCGGCGATGATCCCAGA
GCAAGCCGGAAACGGACTGTTTGGGCACCTGGTGGCGACGTTGCTCGCAT
CGGTGACCTTCGCCCCCAAGGGAATGGTCGACGGCGACGGCCCCGAGGAA
GTTCTGGCGAGAGCCGACCACCTGCTTGAGGTGGGTGTATCCTAAAGGTT
TGGAGTGGTGAAGACGGAGTGCAGACGCGCGGCGATGATCCCAGAGCAAG
CCGGAAACGGACTGTTTGGGCACCTGGTGGCGACGTTGCTCGCATCGGTG
ACCTTCGCCCCCAAGGGAATGGTCGACGGCGACGGCCCCGAGGAAGTTCT
GGCGAGAGCCGACCACCTGCTTGAGGTGGGTGTATCCTAA
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