mRNA_H-elongata_contig163561.4022.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig163561.4022.1
Unique NamemRNA_H-elongata_contig163561.4022.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig163561.4022.1 vs. uniprot
Match: A0A6H5KA14_9PHAE (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA14_9PHAE)

HSP 1 Score: 138 bits (347), Expect = 2.750e-36
Identity = 68/95 (71.58%), Postives = 83/95 (87.37%), Query Frame = 1
Query:    1 EAQIKSEILRYRGMNSIDIISNPLAWWDEHQVTLPLLRELATSILCVPASSASSERLFSKARLTLTKKRSKLNGSRVAQLVTVRGAIASGVLDKY 285
            +AQ+KSE+LRYRG+ S++   NPL WWD+H+ T PLLREL+  ILCVPASSA+SERLFSKA LTLTK+RS L G+RVAQLVT+RGA+A+GVLDKY
Sbjct:  480 DAQMKSEVLRYRGVTSMNPDGNPLTWWDQHKATFPLLRELSHRILCVPASSAASERLFSKAGLTLTKQRSLLAGNRVAQLVTLRGAVAAGVLDKY 574          
BLAST of mRNA_H-elongata_contig163561.4022.1 vs. uniprot
Match: D8LDT4_ECTSI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDT4_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 7.490e-24
Identity = 52/96 (54.17%), Postives = 70/96 (72.92%), Query Frame = 1
Query:    4 AQIKSEILRYRGMNSIDIISNPLAWWDEHQV--TLPLLRELATSILCVPASSASSERLFSKARLTLTKKRSKLNGSRVAQLVTVRGAIASGVLDKY 285
            AQI+ E+LRYR ++ ID  ++PL WW++ Q   + P LREL   +LCVPA SASS+R+FSK  L    KR++L GSRVA  +T+RGA+A G+LDKY
Sbjct:  819 AQIRWEVLRYRALDKIDSEADPLLWWEQEQQRWSFPFLRELVMRVLCVPACSASSKRVFSKTGLVDNSKRARLRGSRVAPRLTIRGAVACGLLDKY 914          
BLAST of mRNA_H-elongata_contig163561.4022.1 vs. uniprot
Match: A0A6H5KHJ9_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHJ9_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 5.800e-22
Identity = 52/95 (54.74%), Postives = 69/95 (72.63%), Query Frame = 1
Query:    4 AQIKSEILRYRGMNSIDIISNPLAWWDEHQV--TLPLLRELATSILCVPASSASSERLFSKARLTLTKKRSKLNGSRVAQLVTVRGAIASGVLDK 282
            AQI+ E+LRYR ++ ID  S+PL WW++ Q   + P LR+LA  +LCVPA SASS+RLF K  +    KR++L GSRVAQ +TV GA+A G+LDK
Sbjct:  385 AQIRWEVLRYRALDKIDSESDPLLWWEQGQQRWSFPSLRQLAMRVLCVPACSASSKRLFFKTGVVGNSKRARLRGSRVAQRLTVCGAVACGLLDK 479          
BLAST of mRNA_H-elongata_contig163561.4022.1 vs. uniprot
Match: A0A1A8SLH3_9TELE (Dimer_Tnp_hAT domain-containing protein (Fragment) n=1 Tax=Nothobranchius rachovii TaxID=451742 RepID=A0A1A8SLH3_9TELE)

HSP 1 Score: 68.2 bits (165), Expect = 1.980e-12
Identity = 33/75 (44.00%), Postives = 47/75 (62.67%), Query Frame = 1
Query:   19 EILRYRGMNSIDIISNPLAWWDEHQVTLPLLRELATSILCVPASSASSERLFSKARLTLTKKRSKLNGSRVAQLV 243
            EI +YRG   + +  NPL+WW  H+   P L ++A S+LC+P +S S+ER+FS A   +T +RS L    V QLV
Sbjct:   64 EIKKYRGEAPLPLTENPLSWWKNHEQDYPQLSKIAKSLLCIPGTSVSAERVFSSAGDIVTAQRSLLKAEHVDQLV 138          
BLAST of mRNA_H-elongata_contig163561.4022.1 vs. uniprot
Match: A0A1A8EXC3_9TELE (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Nothobranchius korthausae TaxID=1143690 RepID=A0A1A8EXC3_9TELE)

HSP 1 Score: 68.2 bits (165), Expect = 8.860e-12
Identity = 33/75 (44.00%), Postives = 47/75 (62.67%), Query Frame = 1
Query:   19 EILRYRGMNSIDIISNPLAWWDEHQVTLPLLRELATSILCVPASSASSERLFSKARLTLTKKRSKLNGSRVAQLV 243
            EI +YRG   + +  NPL+WW  H+   P L ++A S+LC+P +S S+ER+FS A   +T +RS L    V QLV
Sbjct:  150 EIQKYRGEAPLPLTENPLSWWKNHEQDYPQLSKIAKSLLCIPGTSVSAERVFSSAGDIVTAQRSLLKAEHVDQLV 224          
BLAST of mRNA_H-elongata_contig163561.4022.1 vs. uniprot
Match: A0A1A8L5D9_9TELE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Nothobranchius pienaari TaxID=704102 RepID=A0A1A8L5D9_9TELE)

HSP 1 Score: 68.2 bits (165), Expect = 2.670e-11
Identity = 33/75 (44.00%), Postives = 47/75 (62.67%), Query Frame = 1
Query:   19 EILRYRGMNSIDIISNPLAWWDEHQVTLPLLRELATSILCVPASSASSERLFSKARLTLTKKRSKLNGSRVAQLV 243
            EI +YRG   + +  NPL+WW  H+   P L ++A S+LC+P +S S+ER+FS A   +T +RS L    V QLV
Sbjct:  408 EIKKYRGEAPLPLTENPLSWWKNHEQDYPQLSKIAKSLLCIPGTSVSAERVFSSAGDIVTAQRSLLKAEHVDQLV 482          
BLAST of mRNA_H-elongata_contig163561.4022.1 vs. uniprot
Match: A0A1A8NK20_9TELE (BED-type domain-containing protein n=2 Tax=Nothobranchius TaxID=28779 RepID=A0A1A8NK20_9TELE)

HSP 1 Score: 68.2 bits (165), Expect = 2.730e-11
Identity = 33/75 (44.00%), Postives = 47/75 (62.67%), Query Frame = 1
Query:   19 EILRYRGMNSIDIISNPLAWWDEHQVTLPLLRELATSILCVPASSASSERLFSKARLTLTKKRSKLNGSRVAQLV 243
            EI +YRG   + +  NPL+WW  H+   P L ++A S+LC+P +S S+ER+FS A   +T +RS L    V QLV
Sbjct:  541 EIKKYRGEAPLPLTENPLSWWKNHEQDYPQLSKIAKSLLCIPGTSVSAERVFSSAGDIVTAQRSLLKAEHVDQLV 615          
BLAST of mRNA_H-elongata_contig163561.4022.1 vs. uniprot
Match: A0A1A8M216_9TELE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Nothobranchius pienaari TaxID=704102 RepID=A0A1A8M216_9TELE)

HSP 1 Score: 64.3 bits (155), Expect = 6.320e-11
Identity = 33/77 (42.86%), Postives = 48/77 (62.34%), Query Frame = 1
Query:   10 IKSEILRYRGMNSIDIISNPLAWWDEHQVTLPLLRELATSILCVPASSASSERLFSKARLTLTKKRSKLNGSRVAQL 240
            I++E+L Y G  S+    +PL WW  ++   P L +LA S+LC+PA+S  SERLFS A   ++KKR+ L+   V  L
Sbjct:   60 IQNEVLAYFGEQSLPKKDDPLIWWKANEQRFPTLAKLANSLLCIPATSTPSERLFSAAGNIVSKKRASLSPEHVDML 136          
BLAST of mRNA_H-elongata_contig163561.4022.1 vs. uniprot
Match: A0A2S2PKJ7_SCHGA (Zinc finger BED domain-containing protein 1 (Fragment) n=1 Tax=Schizaphis graminum TaxID=13262 RepID=A0A2S2PKJ7_SCHGA)

HSP 1 Score: 64.3 bits (155), Expect = 9.870e-11
Identity = 29/63 (46.03%), Postives = 44/63 (69.84%), Query Frame = 1
Query:   64 NPLAWWDEHQVTLPLLRELATSILCVPASSASSERLFSKARLTLTKKRSKLNGSRVAQLVTVR 252
            +P  WW EH+   P + ++A ++LC+PASSASSER+FS A   +T KR++LN   V+ LV ++
Sbjct:  103 DPCVWWKEHETIYPTIAKVAKNMLCIPASSASSERVFSTAGNIVTSKRNRLNAKNVSTLVFLK 165          
BLAST of mRNA_H-elongata_contig163561.4022.1 vs. uniprot
Match: A0A8C1JAT0_CYPCA (BED-type domain-containing protein n=6 Tax=Osteoglossocephalai TaxID=1489341 RepID=A0A8C1JAT0_CYPCA)

HSP 1 Score: 65.9 bits (159), Expect = 1.770e-10
Identity = 35/82 (42.68%), Postives = 51/82 (62.20%), Query Frame = 1
Query:    1 EAQIKSEILRYRGMNSIDIIS-NPLAWWDEHQVTLPLLRELATSILCVPASSASSERLFSKARLTLTKKRSKLNGSRVAQLV 243
            +AQ + E+ RY+    + +   +PL+WW EHQ   PL+  LA   LC+P +S SSER+FSKA   +T +RS L+   V QL+
Sbjct:  531 QAQAEEEMSRYKEAPPLSLAEGSPLSWWKEHQNEYPLMSRLAKVYLCIPGTSVSSERVFSKAGDIVTAQRSVLSSKHVDQLL 612          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig163561.4022.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KA14_9PHAE2.750e-3671.58Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ec... [more]
D8LDT4_ECTSI7.490e-2454.17Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KHJ9_9PHAE5.800e-2254.74Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A1A8SLH3_9TELE1.980e-1244.00Dimer_Tnp_hAT domain-containing protein (Fragment)... [more]
A0A1A8EXC3_9TELE8.860e-1244.00Dimer_Tnp_hAT domain-containing protein n=2 Tax=No... [more]
A0A1A8L5D9_9TELE2.670e-1144.00Dimer_Tnp_hAT domain-containing protein n=1 Tax=No... [more]
A0A1A8NK20_9TELE2.730e-1144.00BED-type domain-containing protein n=2 Tax=Nothobr... [more]
A0A1A8M216_9TELE6.320e-1142.86Dimer_Tnp_hAT domain-containing protein n=1 Tax=No... [more]
A0A2S2PKJ7_SCHGA9.870e-1146.03Zinc finger BED domain-containing protein 1 (Fragm... [more]
A0A8C1JAT0_CYPCA1.770e-1042.68BED-type domain-containing protein n=6 Tax=Osteogl... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig163561contigH-elongata_contig163561:93..380 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score68.2
Seed ortholog evalue2.4e-09
Seed eggNOG ortholog69293.ENSGACP00000001009
EggNOG free text desc.RNA polymerase II regulatory region DNA binding
EggNOG OGs39TTD@33154,3BCXB@33208,3E42X@33213,48QQW@7711,49MAJ@7742,KOG1121@1,KOG1121@2759
COG Functional cat.L
Best tax levelVertebrata
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size288
Cds size288
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929957.2371817-CDS-H-elongata_contig163561:92..3801622929957.2371817-CDS-H-elongata_contig163561:92..380Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig163561 93..380 +
1691679223.0837893-CDS-H-elongata_contig163561:92..3801691679223.0837893-CDS-H-elongata_contig163561:92..380Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig163561 93..380 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig163561.4022.1prot_H-elongata_contig163561.4022.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig163561 93..380 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig163561.4022.1

>prot_H-elongata_contig163561.4022.1 ID=prot_H-elongata_contig163561.4022.1|Name=mRNA_H-elongata_contig163561.4022.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=96bp
EAQIKSEILRYRGMNSIDIISNPLAWWDEHQVTLPLLRELATSILCVPAS
SASSERLFSKARLTLTKKRSKLNGSRVAQLVTVRGAIASGVLDKY*
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mRNA from alignment at H-elongata_contig163561:93..380+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig163561.4022.1 ID=mRNA_H-elongata_contig163561.4022.1|Name=mRNA_H-elongata_contig163561.4022.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=288bp|location=Sequence derived from alignment at H-elongata_contig163561:93..380+ (Himanthalia elongata Himel1 dioecious)
GAGGCGCAGATCAAATCAGAGATTCTCCGGTACCGCGGTATGAACTCCAT TGACATAATCAGCAACCCGTTGGCGTGGTGGGATGAACACCAAGTGACCC TTCCACTTCTTCGGGAACTCGCTACGAGTATCCTGTGCGTCCCGGCTTCG TCGGCGTCGTCAGAGCGTCTGTTTTCCAAGGCAAGACTTACCTTGACAAA GAAACGCTCAAAGCTCAACGGATCAAGGGTGGCCCAGCTGGTCACCGTGC GTGGGGCCATCGCATCCGGTGTCCTCGACAAGTACTAA
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Coding sequence (CDS) from alignment at H-elongata_contig163561:93..380+

>mRNA_H-elongata_contig163561.4022.1 ID=mRNA_H-elongata_contig163561.4022.1|Name=mRNA_H-elongata_contig163561.4022.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=576bp|location=Sequence derived from alignment at H-elongata_contig163561:93..380+ (Himanthalia elongata Himel1 dioecious)
GAGGCGCAGATCAAATCAGAGATTCTCCGGTACCGCGGTATGAACTCCAT
TGACATAATCAGCAACCCGTTGGCGTGGTGGGATGAACACCAAGTGACCC
TTCCACTTCTTCGGGAACTCGCTACGAGTATCCTGTGCGTCCCGGCTTCG
TCGGCGTCGTCAGAGCGTCTGTTTTCCAAGGCAAGACTTACCTTGACAAA
GAAACGCTCAAAGCTCAACGGATCAAGGGTGGCCCAGCTGGTCACCGTGC
GTGGGGCCATCGCATCCGGTGTCCTCGACAAGTACTAAGAGGCGCAGATC
AAATCAGAGATTCTCCGGTACCGCGGTATGAACTCCATTGACATAATCAG
CAACCCGTTGGCGTGGTGGGATGAACACCAAGTGACCCTTCCACTTCTTC
GGGAACTCGCTACGAGTATCCTGTGCGTCCCGGCTTCGTCGGCGTCGTCA
GAGCGTCTGTTTTCCAAGGCAAGACTTACCTTGACAAAGAAACGCTCAAA
GCTCAACGGATCAAGGGTGGCCCAGCTGGTCACCGTGCGTGGGGCCATCG
CATCCGGTGTCCTCGACAAGTACTAA
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